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Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 3701 over 12 years Aaron Marcuse-Kubitza backups/Makefile: Added synchronization of back...
  bin 4068 about 12 years Aaron Marcuse-Kubitza bin/map: collision_suffix: Setting back to _alt...
  config 272 almost 13 years Aaron Marcuse-Kubitza Moved bien_password to new config dir
  inputs 4080 about 12 years Aaron Marcuse-Kubitza inputs/SpeciesLink/maps/DwC.specimens.csv: Rema...
  lib 4078 about 12 years Aaron Marcuse-Kubitza xml_func.py: simplify(): Apply pass-through opt...
  mappings 4079 about 12 years Aaron Marcuse-Kubitza mappings/DwC2-VegBIEN.specimens.csv: catalogNum...
  schemas 4076 about 12 years Aaron Marcuse-Kubitza schemas/vegbien.sql: Moved collectionnumber fro...
  to_do 2547 over 12 years Aaron Marcuse-Kubitza to_do/timeline.doc: Updated to reflect the mont...
Makefile 10.1 KB 3764 about 12 years Aaron Marcuse-Kubitza root Makefile, input.Makefile: Maps validation:...
README.TXT 9.03 KB 3845 about 12 years Aaron Marcuse-Kubitza README.TXT: After a new import: Added steps to ...
map 1.22 KB 3475 over 12 years Aaron Marcuse-Kubitza root map: Run bin/map with a nice increment of ...

Latest revisions

# Date Author Comment
4080 08/16/2012 04:55 PM Aaron Marcuse-Kubitza

inputs/SpeciesLink/maps/DwC.specimens.csv: Remapped fieldNumber to recordNumber because term usage was inconsistent with DwC definition. Datasources often confuse this term, because it seems like the collection number, but is actually the author code for the event (VegBank's authorObsCode).

4079 08/16/2012 04:28 PM Aaron Marcuse-Kubitza

mappings/DwC2-VegBIEN.specimens.csv: catalogNumber: Added additional VegCSV mappings for mergability. taxonoccurrence.authortaxoncode: Added alternative mappings from VegCSV for mergability.

4078 08/16/2012 04:21 PM Aaron Marcuse-Kubitza

xml_func.py: simplify(): Apply pass-through optimizations for _if statements with no condition (which means false). This faciliates automated testing after an _if statement has been added, because the put template provided as part of the automated test will only change for those datasources that actually have a condition entry for the _if statement, which greatly reduces the number of tests that need to be accepted. (Note that the path before the _if will still be included as an empty path if there are no other mappings to that table, because the _if statement does not surround it.)

4077 08/16/2012 02:26 PM Aaron Marcuse-Kubitza

mappings/VegCSV-VegBIEN.specimens.csv: Added DwC mappings, to enable use of one VegCSV-VegBIEN mapping for specimens and plots data

4076 08/16/2012 02:22 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: Moved collectionnumber from specimenreplicate to plantobservation to replace authorplantcode, since these terms are used analogously in plots and specimens data. This code is really the DwC recordNumber (VegBIEN collectionnumber), which "serves as a link between field notes and an Occurrence record, such as a specimen [or plots data] collector's number" (http://rs.tdwg.org/dwc/terms/#recordNumber). Also, this prevents a specimenreplicate from incorrectly being created when plots data provides an authorplantcode.

4075 08/16/2012 01:55 PM Aaron Marcuse-Kubitza

mappings/DwC2-VegBIEN.specimens.csv: Mapped individualID for mergability with VegCSV

4074 08/16/2012 01:49 PM Aaron Marcuse-Kubitza

mappings/DwC2-VegBIEN.specimens.csv, VegCSV-VegBIEN.specimens.csv: Split occurrenceID into occurrenceID and individualID, where individualID refers to the plant in plots data and occurrenceID refers to the specimen in specimens data. This prevents plant sourceaccessioncodes from being mapped to the specimenreplicate, which was messing up stems mappings for the parent plantobservation. It also avoids mapping the specimenreplicate sourceaccessioncode to additional tables where it isn't needed. (Note that occurrenceID is needed for location to ensure that each specimen gets its own location to make locationdeterminations on. Everything else is directly or indirectly scoped by location when its own sourceaccessioncode isn't specified.)

4073 08/16/2012 01:33 PM Aaron Marcuse-Kubitza

mappings/DwC2-VegBIEN.specimens.csv, VegCSV-VegBIEN.specimens.csv: taxonoccurrence: Removed catalogNumber mapping because the catalogNumber applies only to the specimen, not to the occurrence, especially in plots data

4072 08/16/2012 01:14 PM Aaron Marcuse-Kubitza

mappings/DwC2-VegBIEN.specimens.csv, VegCSV-VegBIEN.specimens.csv: taxonoccurrence: Map everything except occurrenceID (which is globally unique) to new authortaxoncode, which only needs to be unique within the locationevent

4071 08/16/2012 12:59 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: taxonoccurrence: Renamed taxonoccurrence_locationevent_1_to_1 to taxonoccurrence_unique_within_locationevent and added new authortaxoncode to it

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