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root/mappings/for_review/VegCSV-VegBIEN.specimens.csv @ 4083

1 3968 aaronmk 
VegCSV[DwC],VegBIEN:,Comments
2 
plotArea,//location/area,
3 3990 aaronmk 
plotName,//location/authorlocationcode,
4 3999 aaronmk 
fieldNumber,//location/authorlocationcode,
5 4076 aaronmk 
occurrenceID,//location/authorlocationcode,
6 
institutionCode,//location/authorlocationcode,
7 
collectionCode,//location/authorlocationcode,
8 
collectionID,//location/authorlocationcode,
9 4064 aaronmk 
voucherType,"//location/authorlocationcode/_if[@name=""if indirect voucher""]/cond",
10 4060 aaronmk 
catalogNumber,"//location/authorlocationcode/_if[@name=""if indirect voucher""]/else",
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verbatimElevation,//location/elevation,
12 
maximumElevationInMeters,//location/elevation,
13 
minimumElevationInMeters,//location/elevation,
14 
minimumElevationInMeters,//location/elevationrange,
15 
maximumElevationInMeters,//location/elevationrange,
16 3985 aaronmk 
minimumElevationInMeters,//location/elevationrange,
17 3968 aaronmk 
landform,//location/landform,
18 
coordinateUncertaintyInMeters,//locationdetermination/coordsaccuracy,
19 4076 aaronmk 
coordinatePrecision,//locationdetermination/coordsaccuracy,
20 3968 aaronmk 
footprintWKT,//locationdetermination/footprintgeometry_dwc,
21 
decimalLatitude,//locationdetermination/latitude,
22 4076 aaronmk 
verbatimLatitude,//locationdetermination/latitude,
23 3968 aaronmk 
decimalLongitude,//locationdetermination/longitude,
24 4076 aaronmk 
verbatimLongitude,//locationdetermination/longitude,
25 3968 aaronmk 
county,//locationdetermination/namedplace_id[rank=county]/placename,
26 
stateProvince,//locationdetermination/namedplace_id[rank=stateProvince]/placename,
27 
country,//locationdetermination/namedplace_id[rank=country]/placename,
28 
continent,//locationdetermination/namedplace_id[rank=continent]/placename,
29 
samplingProtocol,//method/name,
30 
projectName,//project/projectname,
31 
projectID,//project/sourceaccessioncode,
32 3999 aaronmk 
fieldNumber,//locationevent/authoreventcode,
33 3968 aaronmk 
communityID,//*/commname,
34 
communityName,//commconcept/commdescription,
35 4044 aaronmk 
plotEventEndDate,//locationevent/obsenddate/_*/date,
36 4020 aaronmk 
eventDate,//locationevent/obsenddate/_*/date,
37 4076 aaronmk 
dateCollected,//locationevent/obsenddate/_*/date,
38 4044 aaronmk 
plotEventStartDate,//locationevent/obsstartdate/_*/date,
39 4020 aaronmk 
eventDate,//locationevent/obsstartdate/_*/date,
40 4076 aaronmk 
dateCollected,//locationevent/obsstartdate/_*/date,
41 3968 aaronmk 
precipitation,//locationevent/precipitation,
42 
acidity,//soilobs/acidity,
43 
baseSaturation,//soilobs/basesaturation,
44 
calcium,//soilobs/calcium,
45 
carbon,//soilobs/carbon,
46 
cationExchangeCapacity,//soilobs/cationexchangecapacity,
47 
clay,//soilobs/clay,
48 
conductivity,//soilobs/conductivity,
49 
magnesium,//soilobs/magnesium,
50 
nitrogen,//soilobs/nitrogen,
51 
organic,//soilobs/organic,
52 
ph,//soilobs/ph,
53 
phosphorus,//soilobs/phosphorus,
54 
potassium,//soilobs/potassium,
55 
sand,//soilobs/sand,
56 
silt,//soilobs/silt,
57 
sodium,//soilobs/sodium,
58 
texture,//soilobs/texture,
59 4076 aaronmk 
dateCollected,//aggregateoccurrence/collectiondate/_*/date,
60 3968 aaronmk 
individualCount,//aggregateoccurrence/count,
61 
coverPercent,//aggregateoccurrence/cover,
62 
censusNumber,"//aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]/definedvalue",
63 
volumeCanopy,//aggregateoccurrence/linecover,
64 
fieldNotes,//aggregateoccurrence/notes,
65 4077 aaronmk 
recordNumber,//plantobservation/collectionnumber,
66 4076 aaronmk 
sex,"//plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections"
67 4074 aaronmk 
individualID,//plantobservation/sourceaccessioncode,
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voucherType,"//specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond",
69 
catalogNumber,"//specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
70 4076 aaronmk 
collectionCode,//specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
71 
collectionID,//specimenreplicate/collectioncode_dwc,
72 
institutionCode,//party/organizationname,
73 
occurrenceID,//specimenreplicate/sourceaccessioncode,
74 3981 aaronmk 
stemCount,//plantobservation/stemcount,
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basalDiameter,//stemobservation/basaldiameter,
76 
canopyForm,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]/definedvalue",
77 
canopyPosition,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]/definedvalue",
78 
diameterBreastHeightGentry,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]/definedvalue",
79 
lianaInfestation,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]/definedvalue",
80 
stemNotes,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]/definedvalue",
81 
diameterBreastHeight,//stemobservation/diameterbreastheight,
82 
height,//stemobservation/height,
83 
heightFirstBranch,//stemobservation/heightfirstbranch,
84 
tag,"//stemobservation/stemtag[""""/iscurrent=true]/tag",Quotes sort it before tag2
85 
previousTag,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag:[../stemtag?[iscurrent=true]/iscurrent=false]/tag,
86 
relativePlotX,//stemobservation/xposition,
87 
relativePlotY,//stemobservation/yposition,
88 4072 aaronmk 
recordNumber,//taxonoccurrence/authortaxoncode,
89 
scientificName,//taxonoccurrence/authortaxoncode,
90 3968 aaronmk 
growthForm,//taxonoccurrence/growthform,
91 4076 aaronmk 
establishmentMeans,//taxonoccurrence/iscultivated,
92 
establishmentMeans,//taxonoccurrence/isnative,
93 4074 aaronmk 
individualID,//taxonoccurrence/sourceaccessioncode,
94 3981 aaronmk 
computer.scientificNameAuthorship,//plantconcept/plantname_id[rank=authority]/plantname,
95 3968 aaronmk 
computer.taxonRank,//plantconcept/plantname_id[rank=subspecies]/plantname,
96 
computer.infraspecificEpithet,//plantconcept/plantname_id[rank=subspecies]/plantname,
97 
computer.specificEpithet,//plantconcept/plantname_id[rank=species]/plantname,
98 
computer.genus,//plantconcept/plantname_id[rank=genus]/plantname,
99 
computer.family,//plantconcept/plantname_id[rank=family]/plantname,
100 4076 aaronmk 
identifiedBy,//taxonoccurrence/taxondetermination[role=identifier]/*_id/party/givenname,
101 
identifiedBy,//taxonoccurrence/taxondetermination[role=identifier]/*_id/party/middlename,
102 
identifiedBy,//taxonoccurrence/taxondetermination[role=identifier]/*_id/party/surname,
103 3968 aaronmk 
scientificName,//plantconcept/plantname_id[rank=binomial]/plantname,
104 
scientificNameAuthorship,//plantconcept/plantname_id[rank=authority]/plantname,
105 3981 aaronmk 
infraspecificEpithet,//plantconcept/plantname_id[rank=subspecies]/plantname,
106 3968 aaronmk 
specificEpithet,//plantconcept/plantname_id[rank=species]/plantname,
107 
genus,//plantconcept/plantname_id[rank=genus]/plantname,
108 
family,//plantconcept/plantname_id[rank=family]/plantname,
109 
order,//plantconcept/plantname_id[rank=order]/plantname,
110 
class,//plantconcept/plantname_id[rank=class]/plantname,
111 
phylum,//plantconcept/plantname_id[rank=subkingdom]/plantname,
112 
kingdom,//plantconcept/plantname_id[rank=kingdom]/plantname,
113 4076 aaronmk 
dateIdentified,//taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date,
114 
taxonRemarks,//taxonoccurrence/taxondetermination[role=identifier]/notes,
115 3981 aaronmk 
identificationQualifier,//taxonoccurrence/taxondetermination[role=identifier]/taxonfit,
116 4076 aaronmk 
recordedBy,//taxonoccurrence/verbatimcollectorname,
117 3968 aaronmk 
recordedBy.givenName,//taxonoccurrence/verbatimcollectorname,
118 
recordedBy.surName,//taxonoccurrence/verbatimcollectorname,
119 4045 aaronmk 
voucherType,"//specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond",
120 
catalogNumber,"//specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
121 3968 aaronmk 
temperature,//locationevent/temperature,
122 
maximumDepthInMeters,//locationevent/waterdepth,
123 
minimumDepthInMeters,//locationevent/waterdepth,
124 
locality,//location/locationnarrative,
125 4076 aaronmk 
verbatimLocality,//location/locationnarrative,
126 
habitat,"//location/locationnarrative/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
127 3968 aaronmk 
plotNotes,//location/notespublic,
128 3994 aaronmk 
parentPlotName,//location/authorlocationcode,
129 
parentLocationID,//location/sourceaccessioncode,
130 3968 aaronmk 
slopeAspect,//location/slopeaspect,
131 
slopeGradient,//location/slopegradient,
132 3990 aaronmk 
locationID,//location/sourceaccessioncode,
133 4076 aaronmk 
acceptedNameUsage,,
134 
acceptedNameUsageID,,
135 
associatedMedia,,
136 
associatedOccurrences,,
137 
associatedReferences,,
138 
associatedSequences,,
139 
associatedTaxa,,
140 
basisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.
141 
bed,,
142 
behavior,,
143 
countryCode,,
144 
dataGeneralizations,,
145 
datasetID,,
146 
datasetName,,
147 
day,,Brad: OMIT
148 
dcterms:accessRights,,
149 
dcterms:bibliographicCitation,,
150 
dcterms:language,,
151 
dcterms:modified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source."
152 
dcterms:references,,
153 
dcterms:rights,,
154 
dcterms:rightsHolder,,
155 
dcterms:type,,
156 
disposition,,
157 
dynamicProperties,,
158 
earliestAgeOrLowestStage,,
159 
earliestEonOrLowestEonothem,,
160 
earliestEpochOrLowestSeries,,
161 
earliestEraOrLowestErathem,,
162 
earliestPeriodOrLowestSystem,,
163 
endDayOfYear,,
164 
eventID,,
165 
eventRemarks,,
166 
eventTime,,Brad: OMIT
167 
footprintSRS,,
168 
footprintSpatialFit,,
169 
formation,,
170 
geodeticDatum,,
171 
geologicalContextID,,
172 
georeferenceProtocol,,
173 
georeferenceRemarks,,
174 
georeferenceSources,,
175 
georeferenceVerificationStatus,,
176 
georeferencedBy,,
177 
georeferencedDate,,
178 
group,,
179 
higherClassification,,
180 
higherGeography,,
181 
higherGeographyID,,
182 
highestBiostratigraphicZone,,
183 
identificationID,,
184 
identificationReferences,,
185 
identificationRemarks,,
186 
identificationVerificationStatus,,
187 
informationWithheld,,
188 
institutionID,,
189 
island,,
190 
islandGroup,,
191 
latestAgeOrHighestStage,,
192 
latestEonOrHighestEonothem,,
193 
latestEpochOrHighestSeries,,
194 
latestEraOrHighestErathem,,
195 
latestPeriodOrHighestSystem,,
196 
lifeStage,,
197 
lithostratigraphicTerms,,
198 
locationAccordingTo,,
199 
locationRemarks,,
200 
lowestBiostratigraphicZone,,
201 
maximumDistanceAboveSurfaceInMeters,,
202 
measurementAccuracy,,
203 
measurementDeterminedBy,,
204 
measurementDeterminedDate,,
205 
measurementID,,
206 
measurementMethod,,
207 
measurementRemarks,,
208 
measurementType,,
209 
measurementUnit,,
210 
measurementValue,,
211 
member,,
212 
minimumDistanceAboveSurfaceInMeters,,
213 
month,,
214 
municipality,,
215 
nameAccordingTo,,
216 
nameAccordingToID,,
217 
namePublishedIn,,
218 
namePublishedInID,,
219 
namePublishedInYear,,
220 
nomenclaturalCode,,
221 
nomenclaturalStatus,,
222 
occurrenceRemarks,,
223 
occurrenceStatus,,
224 
originalNameUsage,,
225 
originalNameUsageID,,
226 
otherCatalogNumbers,,
227 
ownerInstitutionCode,,
228 
parentNameUsage,,
229 
parentNameUsageID,,
230 
pointRadiusSpatialFit,,
231 
preparations,,Brad: OMIT
232 
previousIdentifications,,Brad: OMIT
233 
relatedResourceID,,Brad: OMIT
234 
relationshipAccordingTo,,
235 
relationshipEstablishedDate,,
236 
relationshipOfResource,,Brad: OMIT
237 
relationshipRemarks,,
238 
reproductiveCondition,,
239 
resourceID,,
240 
resourceRelationshipID,,
241 
samplingEffort,,
242 
scientificNameID,,
243 
startDayOfYear,,
244 
subgenus,,
245 
taxonConceptID,,
246 
taxonID,,
247 
taxonRank,,
248 
taxonomicStatus,,
249 
typeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN
250 
verbatimCoordinateSystem,,
251 
verbatimCoordinates,,
252 
verbatimDepth,,
253 
verbatimEventDate,,
254 
verbatimSRS,,
255 
verbatimTaxonRank,,
256 
vernacularName,,
257 
waterBody,,
258 
year,,