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inputs/MT/maps/src.specimens.csv
1
MT[Veg+],Veg+,Comments
2
id,,
3
establishmentMeans,,
4
locality,,
5
language,,
6
collectionID,,
7
occurrenceRemarks,,
8
type,,
9
institutionCode,,
10
rights,,
11
family,,
12
continent,,
13
collectionCode,,
14
datasetName,,
15
rightsHolder,,
16
genus,,
17
basisOfRecord,,
18
individualCount,,
19
countryCode,,
inputs/MT/maps/map.specimens.csv
1
MT[Veg+],Veg+,Comments
inputs/MT/maps/map.specimens.full.csv
1
MT[Veg+],Veg+,Comments
2
basisOfRecord,basisOfRecord
3
collectionCode,collectionCode
4
collectionID,collectionID
5
continent,continent
6
countryCode,countryCode
7
datasetName,datasetName
8
establishmentMeans,establishmentMeans
9
family,family
10
genus,genus
11
id,id
12
individualCount,individualCount
13
institutionCode,institutionCode
14
language,language
15
locality,locality
16
occurrenceRemarks,occurrenceRemarks
17
rights,rights
18
rightsHolder,rightsHolder
19
type,type
inputs/MT/maps/VegBIEN.specimens.csv
1
MT[Veg+],VegBIEN:,Comments
2
id,/location/authorlocationcode/_alt/3,
3
institutionCode,/location/authorlocationcode/_alt/4/_merge/1,
4
collectionCode,/location/authorlocationcode/_alt/4/_merge/2/_merge/1,
5
collectionID,/location/authorlocationcode/_alt/4/_merge/2/_merge/2,
6
continent,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",
7
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,
8
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
9
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/2,
10
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname,
11
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,
12
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value",
13
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value",
14
genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
15
family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
16
locality,/location/locationnarrative/_merge/1,
17
basisOfRecord,,** No non-empty join mapping for basisOfRecord ** 
18
countryCode,,** No non-empty join mapping for countryCode ** 
19
datasetName,,** No non-empty join mapping for datasetName ** 
20
language,,** No non-empty join mapping for language ** 
21
occurrenceRemarks,,** No non-empty join mapping for occurrenceRemarks ** 
22
rights,,** No non-empty join mapping for rights ** 
23
rightsHolder,,** No non-empty join mapping for rightsHolder ** 
24
type,,** No non-empty join mapping for type ** 
inputs/XAL/maps/map.specimens.csv
1
"XAL[Veg+,darwin:]:/content/record/",Veg+,Comments
2
CollectorNumber,recordNumber/_alt/1,
3
FieldNumber,recordNumber/_alt/2,"This historical DwC term (http://rs.tdwg.org/dwc/terms/history/index.htm#fieldNumber-2009-04-24) has close to the same meaning as recordNumber (http://rs.tdwg.org/dwc/terms/#recordNumber). It is also unused: `grep -F ""<darwin:FieldNumber>"" inputs/XAL/src/digir.specimens.xml` returns no lines."
inputs/XAL/maps/map.specimens.full.csv
1
"XAL[Veg+,darwin:]:/content/record/",Veg+,Comments
2
BasisOfRecord,BasisOfRecord
3
CatalogNumber,CatalogNumber
4
Class,Class
5
CollectionCode,CollectionCode
6
Collector,Collector
7
ContinentOcean,ContinentOcean
8
CoordinatePrecision,CoordinatePrecision
9
Country,Country
10
County,County
11
DateLastModified,DateLastModified
12
DayCollected,DayCollected
13
DayIdentified,DayIdentified
14
Family,Family
15
Genus,Genus
16
IdentifiedBy,IdentifiedBy
17
IndividualCount,IndividualCount
18
InstitutionCode,InstitutionCode
19
JulianDay,JulianDay
20
Kingdom,Kingdom
21
Latitude,Latitude
22
Locality,Locality
23
Longitude,Longitude
24
MaximumDepth,MaximumDepth
25
MaximumElevation,MaximumElevation
26
MinimumDepth,MinimumDepth
27
MinimumElevation,MinimumElevation
28
MonthCollected,MonthCollected
29
MonthIdentified,MonthIdentified
30
Notes,Notes
31
Order,Order
32
Phylum,Phylum
33
PreparationType,PreparationType
34
PreviousCatalogNumber,PreviousCatalogNumber
35
RelatedCatalogItem,RelatedCatalogItem
36
RelationshipType,RelationshipType
37
ScientificName,ScientificName
38
ScientificNameAuthor,ScientificNameAuthor
39
Sex,Sex
40
Species,Species
41
StateProvince,StateProvince
42
Subspecies,Subspecies
43
TimeOfDay,TimeOfDay
44
TypeStatus,TypeStatus
45
YearCollected,YearCollected
46
YearIdentified,YearIdentified
47
CollectorNumber,recordNumber/_alt/1,
48
FieldNumber,recordNumber/_alt/2,"This historical DwC term (http://rs.tdwg.org/dwc/terms/history/index.htm#fieldNumber-2009-04-24) has close to the same meaning as recordNumber (http://rs.tdwg.org/dwc/terms/#recordNumber). It is also unused: `grep -F ""<darwin:FieldNumber>"" inputs/XAL/src/digir.specimens.xml` returns no lines."
inputs/XAL/maps/VegBIEN.specimens.csv
1
"XAL[Veg+,darwin:]:/content/record/",VegBIEN:,Comments
2
InstitutionCode,/location/authorlocationcode/_alt/4/_merge/1,
3
CollectionCode,/location/authorlocationcode/_alt/4/_merge/2/_merge/1,
4
CatalogNumber,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/else",
5
MaximumElevation,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
6
MinimumElevation,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",
7
MinimumElevation,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",
8
MaximumElevation,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1/_replace:[""\bca\.?""=]/value",
9
MinimumElevation,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value",
10
CoordinatePrecision,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2,
11
Latitude,"/location/locationdetermination/latitude/_alt/2/_nullIf:[null=0,type=float]/value",
12
Longitude,"/location/locationdetermination/longitude/_alt/2/_nullIf:[null=0,type=float]/value",
13
County,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",
14
StateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",
15
Country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",
16
ContinentOcean,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",
17
DayCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
18
MonthCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
19
YearCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
20
DayCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
21
MonthCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
22
YearCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
23
DayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
24
MonthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
25
YearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
26
IndividualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,
27
Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes,
28
CollectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/2/_alt/1,
29
FieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/2/_alt/2,"This historical DwC term (http://rs.tdwg.org/dwc/terms/history/index.htm#fieldNumber-2009-04-24) has close to the same meaning as recordNumber (http://rs.tdwg.org/dwc/terms/#recordNumber). It is also unused: `grep -F ""<darwin:FieldNumber>"" inputs/XAL/src/digir.specimens.xml` returns no lines."
30
Sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections"
31
CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
32
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
33
InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname,
34
CollectorNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/2/_alt/1,
35
FieldNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/2/_alt/2,"This historical DwC term (http://rs.tdwg.org/dwc/terms/history/index.htm#fieldNumber-2009-04-24) has close to the same meaning as recordNumber (http://rs.tdwg.org/dwc/terms/#recordNumber). It is also unused: `grep -F ""<darwin:FieldNumber>"" inputs/XAL/src/digir.specimens.xml` returns no lines."
36
ScientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2,
37
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first,
38
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle,
39
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last,
40
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
41
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
42
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
43
Species,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
44
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
45
Family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
46
Order,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",
47
Class,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",
48
Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",
49
Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
50
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
51
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
52
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
53
Collector,/location/locationevent/taxonoccurrence/verbatimcollectorname,
54
CatalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
55
MaximumDepth,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
56
MinimumDepth,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
57
Locality,/location/locationnarrative/_merge/1,
58
BasisOfRecord,,** No non-empty join mapping for BasisOfRecord ** 
59
DateLastModified,,** No non-empty join mapping for DateLastModified ** 
60
JulianDay,,** No non-empty join mapping for JulianDay ** 
61
PreparationType,,** No non-empty join mapping for PreparationType ** 
62
PreviousCatalogNumber,,** No non-empty join mapping for PreviousCatalogNumber ** 
63
RelatedCatalogItem,,** No non-empty join mapping for RelatedCatalogItem ** 
64
RelationshipType,,** No non-empty join mapping for RelationshipType ** 
65
TimeOfDay,,** No non-empty join mapping for TimeOfDay ** 
66
TypeStatus,,** No non-empty join mapping for TypeStatus ** 
inputs/XAL/maps/src.specimens.csv
1
"XAL[Veg+,darwin:]:/content/record/",Original name
2
DateLastModified,darwin:DateLastModified
3
InstitutionCode,darwin:InstitutionCode
4
CollectionCode,darwin:CollectionCode
5
CatalogNumber,darwin:CatalogNumber
6
ScientificName,darwin:ScientificName
7
BasisOfRecord,darwin:BasisOfRecord
8
Kingdom,darwin:Kingdom
9
Phylum,darwin:Phylum
10
Class,darwin:Class
11
Order,darwin:Order
12
Family,darwin:Family
13
Genus,darwin:Genus
14
Species,darwin:Species
15
Subspecies,darwin:Subspecies
16
ScientificNameAuthor,darwin:ScientificNameAuthor
17
IdentifiedBy,darwin:IdentifiedBy
18
YearIdentified,darwin:YearIdentified
19
MonthIdentified,darwin:MonthIdentified
20
DayIdentified,darwin:DayIdentified
21
TypeStatus,darwin:TypeStatus
22
CollectorNumber,darwin:CollectorNumber
23
FieldNumber,darwin:FieldNumber
24
Collector,darwin:Collector
25
YearCollected,darwin:YearCollected
26
MonthCollected,darwin:MonthCollected
27
DayCollected,darwin:DayCollected
28
JulianDay,darwin:JulianDay
29
TimeOfDay,darwin:TimeOfDay
30
ContinentOcean,darwin:ContinentOcean
31
Country,darwin:Country
32
StateProvince,darwin:StateProvince
33
County,darwin:County
34
Locality,darwin:Locality
35
Longitude,darwin:Longitude
36
Latitude,darwin:Latitude
37
CoordinatePrecision,darwin:CoordinatePrecision
38
MinimumElevation,darwin:MinimumElevation
39
MaximumElevation,darwin:MaximumElevation
40
MinimumDepth,darwin:MinimumDepth
41
MaximumDepth,darwin:MaximumDepth
42
Sex,darwin:Sex
43
PreparationType,darwin:PreparationType
44
IndividualCount,darwin:IndividualCount
45
PreviousCatalogNumber,darwin:PreviousCatalogNumber
46
RelationshipType,darwin:RelationshipType
47
RelatedCatalogItem,darwin:RelatedCatalogItem
48
Notes,darwin:Notes
inputs/NY/maps/src.specimens.csv
1
NY[Veg+],Veg+,Comments
2
key,,
3
DateLastModified,,
4
InstitutionCode,,
5
CollectionCode,,
6
CatalogNumber,,
7
ScientificName,,
8
BasisOfRecord,,
9
Kingdom,,
10
Phylum,,
11
Class,,
12
Order,,
13
Family,,
14
Genus,,
15
Species,,
16
Subspecies,,
17
ScientificNameAuthor,,
18
IdentifiedBy,,
19
YearIdentified,,
20
MonthIdentified,,
21
DayIdentified,,
22
TypeStatus,,
23
CollectorNumber,,
24
FieldNumber,,
25
Collector,,
26
YearCollected,,
27
MonthCollected,,
28
DayCollected,,
29
JulianDay,,
30
TimeOfDay,,
31
ContinentOcean,,
32
Country,,
33
StateProvince,,
34
County,,
35
Locality,,
36
Longitude,,
37
Latitude,,
38
CoordinatePrecision,,
39
BoundingBox,,
40
MinimumElevation,,
41
MaximumElevation,,
42
MinimumDepth,,
43
MaximumDepth,,
44
Sex,,
45
PreparationType,,
46
IndividualCount,,
47
PreviousCatalogNumber,,
48
RelationshipType,,
49
RelatedCatalogItem,,
50
Notes,,
51
Habitat,,
52
PlantFungusDescription,,
53
Substrate,,
54
Vegetation,,
55
UniqueNYInternalRecordNumber,,
inputs/NY/maps/map.specimens.csv
1
NY[Veg+],Veg+,Comments
2
key,,Not used because UniqueNYInternalRecordNumber is a better pkey
3
FieldNumber,recordNumber,Usage inconsistent with DwC definition
4
Locality,Locality/_merge/1,
5
MinimumElevation,MinimumElevation/_nullIf:[null=.]/value,
6
Notes,Notes/_merge/1,
7
PlantFungusDescription,"Notes/_merge/2/_label[label=""plant fungus""]/value",
8
Substrate,"Locality/_merge/2/_label[label=""substrate""]/value",
9
Vegetation,"Locality/_merge/3/_label[label=""vegetation""]/value",
10
UniqueNYInternalRecordNumber,occurrenceID,
inputs/NY/maps/map.specimens.full.csv
1
NY[Veg+],Veg+,Comments
2
BasisOfRecord,BasisOfRecord
3
BoundingBox,BoundingBox
4
CatalogNumber,CatalogNumber
5
Class,Class
6
CollectionCode,CollectionCode
7
Collector,Collector
8
CollectorNumber,CollectorNumber
9
ContinentOcean,ContinentOcean
10
CoordinatePrecision,CoordinatePrecision
11
Country,Country
12
County,County
13
DateLastModified,DateLastModified
14
DayCollected,DayCollected
15
DayIdentified,DayIdentified
16
Family,Family
17
Genus,Genus
18
Habitat,Habitat
19
IdentifiedBy,IdentifiedBy
20
IndividualCount,IndividualCount
21
InstitutionCode,InstitutionCode
22
JulianDay,JulianDay
23
Kingdom,Kingdom
24
Latitude,Latitude
25
Locality,Locality/_merge/1,
26
Substrate,"Locality/_merge/2/_label[label=""substrate""]/value",
27
Vegetation,"Locality/_merge/3/_label[label=""vegetation""]/value",
28
Longitude,Longitude
29
MaximumDepth,MaximumDepth
30
MaximumElevation,MaximumElevation
31
MinimumDepth,MinimumDepth
32
MinimumElevation,MinimumElevation/_nullIf:[null=.]/value,
33
MonthCollected,MonthCollected
34
MonthIdentified,MonthIdentified
35
Notes,Notes/_merge/1,
36
PlantFungusDescription,"Notes/_merge/2/_label[label=""plant fungus""]/value",
37
Order,Order
38
Phylum,Phylum
39
PreparationType,PreparationType
40
PreviousCatalogNumber,PreviousCatalogNumber
41
RelatedCatalogItem,RelatedCatalogItem
42
RelationshipType,RelationshipType
43
ScientificName,ScientificName
44
ScientificNameAuthor,ScientificNameAuthor
45
Sex,Sex
46
Species,Species
47
StateProvince,StateProvince
48
Subspecies,Subspecies
49
TimeOfDay,TimeOfDay
50
TypeStatus,TypeStatus
51
YearCollected,YearCollected
52
YearIdentified,YearIdentified
53
UniqueNYInternalRecordNumber,occurrenceID,
54
FieldNumber,recordNumber,Usage inconsistent with DwC definition
55
key,,Not used because UniqueNYInternalRecordNumber is a better pkey
inputs/NY/maps/VegBIEN.specimens.csv
1
NY[Veg+],VegBIEN:,Comments
2
UniqueNYInternalRecordNumber,/location/authorlocationcode/_alt/3,
3
InstitutionCode,/location/authorlocationcode/_alt/4/_merge/1,
4
CollectionCode,/location/authorlocationcode/_alt/4/_merge/2/_merge/1,
5
CatalogNumber,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/else",
6
MaximumElevation,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
7
MinimumElevation,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value/_nullIf:[null=.]/value",
8
MinimumElevation,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value/_nullIf:[null=.]/value",
9
MaximumElevation,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1/_replace:[""\bca\.?""=]/value",
10
MinimumElevation,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value/_nullIf:[null=.]/value",
11
CoordinatePrecision,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2,
12
BoundingBox,/location/locationdetermination/footprintgeometry_dwc,
13
Latitude,"/location/locationdetermination/latitude/_alt/2/_nullIf:[null=0,type=float]/value",
14
Longitude,"/location/locationdetermination/longitude/_alt/2/_nullIf:[null=0,type=float]/value",
15
County,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",
16
StateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",
17
Country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",
18
ContinentOcean,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",
19
DayCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
20
MonthCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
21
YearCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
22
DayCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
23
MonthCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
24
YearCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
25
DayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
26
MonthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
27
YearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
28
IndividualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,
29
Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_merge/1,
30
PlantFungusDescription,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_merge/2/_label[label=""plant fungus""]/value",
31
CollectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/1,
32
FieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/2,Usage inconsistent with DwC definition
33
Sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections"
34
CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
35
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
36
InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname,
37
UniqueNYInternalRecordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,
38
CollectorNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/1,
39
FieldNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/2,Usage inconsistent with DwC definition
40
ScientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2,
41
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first,
42
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle,
43
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last,
44
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
45
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
46
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
47
Species,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
48
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
49
Family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
50
Order,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",
51
Class,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",
52
Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",
53
Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
54
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
55
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
56
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
57
Collector,/location/locationevent/taxonoccurrence/verbatimcollectorname,
58
CatalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
59
MaximumDepth,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
60
MinimumDepth,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
61
Locality,/location/locationnarrative/_merge/1/_merge/1,
62
Substrate,"/location/locationnarrative/_merge/1/_merge/2/_label[label=""substrate""]/value",
63
Vegetation,"/location/locationnarrative/_merge/1/_merge/3/_label[label=""vegetation""]/value",
64
Habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
65
BasisOfRecord,,** No non-empty join mapping for BasisOfRecord ** 
66
DateLastModified,,** No non-empty join mapping for DateLastModified ** 
67
JulianDay,,** No non-empty join mapping for JulianDay ** 
68
PreparationType,,** No non-empty join mapping for PreparationType ** 
69
PreviousCatalogNumber,,** No non-empty join mapping for PreviousCatalogNumber ** 
70
RelatedCatalogItem,,** No non-empty join mapping for RelatedCatalogItem ** 
71
RelationshipType,,** No non-empty join mapping for RelationshipType ** 
72
TimeOfDay,,** No non-empty join mapping for TimeOfDay ** 
73
TypeStatus,,** No non-empty join mapping for TypeStatus ** 
74
key,,Not used because UniqueNYInternalRecordNumber is a better pkey
inputs/Madidi/maps/src.0.plots.csv
1
Madidi,Veg+,Comments
2
Inventory number,,
3
Expedition number,,
4
Expedition name,,
5
Number of inventory (expedition),,
6
Inventory name,,
7
Inventory code,,
8
First evaluation,,
9
Installed and evaluated by,,
10
Collaborators,,
11
Related Epilocs,,
12
Area,,
13
Number of stems,,
14
Number of trees,,
15
Coordinates,,
16
Latitude,,
17
Longitude,,
18
Latitude (DMS),,
19
Longitude (DMS),,
20
Altitude,,
21
Minimum altitude,,
22
Locality,,
23
Locality description,,
24
Direction,,
25
Vegetation type,,
26
Topographical situation,,
27
Slope,,
28
Soil sample,,
29
pH acuoso (ISRIC 4–– 1 - 14),,
30
Conductividad electrica (ASPT 6–µS/cm– 1 - 10000),,
31
Nitrógeno total (ISRIC 6–%–0.0014),,
32
"Carbón Orgánico (WSP S-9,10–%–0.06)",,
33
"Materia Orgánica (WSP S-9,10–%–0.1)",,
34
Fósforo disponible (ISRIC 14-2–mg/Kg–1.5),,
35
"Sodio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",,
36
"Potasio intercambiable (WSP S-5,10–cmolc/Kg–0.0053)",,
37
"Calcio intercambiable (WSP S-5,10–cmolc/Kg–0.016)",,
38
"Magnesio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",,
39
Acidez intercambiable (ISRIC 11–cmolc/Kg–0.05),,
40
CIC (ISRIC 11–cmolc/Kg–0.05),,
41
Arena (DIN 18 123–%–2.5),,
42
Limo (DIN 18 123–%–1),,
43
Arcilla (DIN 18 123–%–1),,
44
Textural class,,
45
Observaciones,,
46
Orientación/exposicion,,
inputs/Madidi/maps/src.1.organisms.csv
1
Madidi,Veg+,Comments
2
Expedition,,
3
Inventory name,,
4
Number of inventory (general),,
5
Number of inventory (expedition),,
6
"Type Inventory (C, PP, TP)",,
7
Inventory code,,
8
Tag number,,
9
Tree number,,
10
Number of subplot,,
11
Index collector,,
12
Specimen,,
13
Similar specimen,,
14
Plot specimen,,
15
Expedition specimen,,
16
Project specimen,,
17
Field family,,
18
Field name,,
19
Family (revised),,
20
Specie+autor,,
21
Genera,,
22
Specific epithet,,
23
Species and morphotypes,,
24
Autor (revised),,
25
Determined by,,
26
Qualifier,,
27
Common name,,
28
Circumference,,
29
Diameter,,
30
Trunk,,
31
Total height,,
32
Bole height,,
33
Habit,,
34
Phenology,,
35
Crown position,,
36
Crown shape,,
37
Liana presence,,
38
Basal area,,
39
Subplot X,,
40
Subplot Y,,
41
Plot X,,
42
Plot Y,,
43
Observations,,
inputs/Madidi/maps/map.0.plots.csv
1
Madidi,Veg+,Comments
2
Inventory number,,Not globally unique
3
Expedition number,projectID,Consistent (globally unique) between PPM and PT data
4
Expedition name,projectName,Consistent (globally unique) between PPM and PT data
5
Number of inventory (expedition),,The number of the event within the project
6
Inventory name,plotName,
7
Inventory code,locationID,
8
First evaluation,plotEventStartDate,
9
Installed and evaluated by,,"Need a way to store a verbatim list of people, or a function to parse it and insert it iteratively into party"
10
Collaborators,,"Need a way to store a verbatim list of people, or a function to parse it and insert it iteratively into party"
11
Related Epilocs,,"It appears to be a list of people, some with #s after them. It doesn't seem like the definition of Epiloc at <http://rithm.wikispaces.com/Tropicos.Epiloc>, which relates to individual specimens, not whole plots."
12
Area,plotArea,
13
Number of stems,,Do we want to store this data?
14
Number of trees,,Do we want to store this data?
15
Coordinates,,Concatenation of Latitude (DMS) and Longitude (DMS)
16
Latitude,decimalLatitude/_alt/1,
17
Longitude,decimalLongitude/_alt/1,
18
Latitude (DMS),decimalLatitude/_alt/2,
19
Longitude (DMS),decimalLongitude/_alt/2,
20
Altitude,verbatimElevation,
21
Minimum altitude,minimumElevationInMeters,
22
Locality,locality,
23
Locality description,communityName,Often begins with the text in Vegetation type
24
Direction,slopeAspect/_alt/1,Part files provide either this field or Direction
25
Vegetation type,communityID,
26
Topographical situation,landform,
27
Slope,slopeGradient,
28
Soil sample,,Always empty
29
pH acuoso (ISRIC 4–– 1 - 14),ph,
30
Conductividad electrica (ASPT 6–µS/cm– 1 - 10000),conductivity,
31
Nitrógeno total (ISRIC 6–%–0.0014),nitrogen,
32
"Carbón Orgánico (WSP S-9,10–%–0.06)",carbon,
33
"Materia Orgánica (WSP S-9,10–%–0.1)",organic,
34
Fósforo disponible (ISRIC 14-2–mg/Kg–1.5),phosphorus,
35
"Sodio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",sodium,
36
"Potasio intercambiable (WSP S-5,10–cmolc/Kg–0.0053)",potassium,
37
"Calcio intercambiable (WSP S-5,10–cmolc/Kg–0.016)",calcium,
38
"Magnesio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",magnesium,
39
Acidez intercambiable (ISRIC 11–cmolc/Kg–0.05),acidity,
40
CIC (ISRIC 11–cmolc/Kg–0.05),cationExchangeCapacity,
41
Arena (DIN 18 123–%–2.5),sand,
42
Limo (DIN 18 123–%–1),silt,
43
Arcilla (DIN 18 123–%–1),clay,
44
Textural class,texture,
45
Observaciones,plotNotes,
46
Orientación/exposicion,slopeAspect/_alt/2,Part files provide either this field or Orientación
inputs/Madidi/maps/map.0.plots.full.csv
1
Madidi,Veg+,Comments
2
Acidez intercambiable (ISRIC 11–cmolc/Kg–0.05),acidity,
3
"Calcio intercambiable (WSP S-5,10–cmolc/Kg–0.016)",calcium,
4
"Carbón Orgánico (WSP S-9,10–%–0.06)",carbon,
5
CIC (ISRIC 11–cmolc/Kg–0.05),cationExchangeCapacity,
6
Arcilla (DIN 18 123–%–1),clay,
7
Vegetation type,communityID,
8
Locality description,communityName,Often begins with the text in Vegetation type
9
Conductividad electrica (ASPT 6–µS/cm– 1 - 10000),conductivity,
10
Latitude,decimalLatitude/_alt/1,
11
Latitude (DMS),decimalLatitude/_alt/2,
12
Longitude,decimalLongitude/_alt/1,
13
Longitude (DMS),decimalLongitude/_alt/2,
14
Topographical situation,landform,
15
Locality,locality,
16
Inventory code,locationID,
17
"Magnesio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",magnesium,
18
Minimum altitude,minimumElevationInMeters,
19
Nitrógeno total (ISRIC 6–%–0.0014),nitrogen,
20
"Materia Orgánica (WSP S-9,10–%–0.1)",organic,
21
pH acuoso (ISRIC 4–– 1 - 14),ph,
22
Fósforo disponible (ISRIC 14-2–mg/Kg–1.5),phosphorus,
23
Area,plotArea,
24
First evaluation,plotEventStartDate,
25
Inventory name,plotName,
26
Observaciones,plotNotes,
27
"Potasio intercambiable (WSP S-5,10–cmolc/Kg–0.0053)",potassium,
28
Expedition number,projectID,Consistent (globally unique) between PPM and PT data
29
Expedition name,projectName,Consistent (globally unique) between PPM and PT data
30
Arena (DIN 18 123–%–2.5),sand,
31
Limo (DIN 18 123–%–1),silt,
32
Direction,slopeAspect/_alt/1,Part files provide either this field or Direction
33
Orientación/exposicion,slopeAspect/_alt/2,Part files provide either this field or Orientación
34
Slope,slopeGradient,
35
"Sodio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",sodium,
36
Textural class,texture,
37
Altitude,verbatimElevation,
38
Collaborators,,"Need a way to store a verbatim list of people, or a function to parse it and insert it iteratively into party"
39
Coordinates,,Concatenation of Latitude (DMS) and Longitude (DMS)
40
Installed and evaluated by,,"Need a way to store a verbatim list of people, or a function to parse it and insert it iteratively into party"
41
Inventory number,,Not globally unique
42
Number of inventory (expedition),,The number of the event within the project
43
Number of stems,,Do we want to store this data?
44
Number of trees,,Do we want to store this data?
45
Related Epilocs,,"It appears to be a list of people, some with #s after them. It doesn't seem like the definition of Epiloc at <http://rithm.wikispaces.com/Tropicos.Epiloc>, which relates to individual specimens, not whole plots."
46
Soil sample,,Always empty
inputs/Madidi/maps/map.1.organisms.csv
1
Madidi,Veg+,Comments
2
Expedition,,
3
Inventory name,,
4
Number of inventory (general),,
5
Number of inventory (expedition),,
6
"Type Inventory (C, PP, TP)",,
7
Inventory code,,
8
Tag number,,
9
Tree number,,
10
Number of subplot,,
11
Index collector,,
12
Specimen,,
13
Similar specimen,,
14
Plot specimen,,
15
Expedition specimen,,
16
Project specimen,,
17
Field family,,
18
Field name,,
19
Family (revised),,
20
Specie+autor,,
21
Genera,,
22
Specific epithet,,
23
Species and morphotypes,,
24
Autor (revised),,
25
Determined by,,
26
Qualifier,,
27
Common name,,
28
Circumference,,
29
Diameter,,
30
Trunk,,
31
Total height,,
32
Bole height,,
33
Habit,,
34
Phenology,,
35
Crown position,,
36
Crown shape,,
37
Liana presence,,
38
Basal area,,
39
Subplot X,,
40
Subplot Y,,
41
Plot X,,
42
Plot Y,,
43
Observations,,
inputs/Madidi/maps/VegBIEN.0.plots.csv
1
Madidi,VegBIEN:,Comments
2
Area,/location/area,
3
Inventory name,/location/authorlocationcode/_alt/1,
4
Altitude,"/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value",
5
Minimum altitude,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",
6
Minimum altitude,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",
7
Minimum altitude,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value",
8
Topographical situation,/location/landform,
9
Latitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value/_alt/1",
10
Latitude (DMS),"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value/_alt/2",
11
Longitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value/_alt/1",
12
Longitude (DMS),"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value/_alt/2",
13
Expedition name,/location/locationevent/*_id/project/projectname,Consistent (globally unique) between PPM and PT data
14
Expedition number,/location/locationevent/*_id/project/sourceaccessioncode,Consistent (globally unique) between PPM and PT data
15
Vegetation type,/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname,
16
Locality description,/location/locationevent/commclass/commdetermination/*_id/commconcept/commdescription,Often begins with the text in Vegetation type
17
First evaluation,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value,
18
Acidez intercambiable (ISRIC 11–cmolc/Kg–0.05),/location/locationevent/soilobs/acidity,
19
"Calcio intercambiable (WSP S-5,10–cmolc/Kg–0.016)",/location/locationevent/soilobs/calcium,
20
"Carbón Orgánico (WSP S-9,10–%–0.06)",/location/locationevent/soilobs/carbon,
21
CIC (ISRIC 11–cmolc/Kg–0.05),/location/locationevent/soilobs/cationexchangecapacity,
22
Arcilla (DIN 18 123–%–1),/location/locationevent/soilobs/clay,
23
Conductividad electrica (ASPT 6–µS/cm– 1 - 10000),/location/locationevent/soilobs/conductivity,
24
"Magnesio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",/location/locationevent/soilobs/magnesium,
25
Nitrógeno total (ISRIC 6–%–0.0014),/location/locationevent/soilobs/nitrogen,
26
"Materia Orgánica (WSP S-9,10–%–0.1)",/location/locationevent/soilobs/organic,
27
pH acuoso (ISRIC 4–– 1 - 14),/location/locationevent/soilobs/ph,
28
Fósforo disponible (ISRIC 14-2–mg/Kg–1.5),/location/locationevent/soilobs/phosphorus,
29
"Potasio intercambiable (WSP S-5,10–cmolc/Kg–0.0053)",/location/locationevent/soilobs/potassium,
30
Arena (DIN 18 123–%–2.5),/location/locationevent/soilobs/sand,
31
Limo (DIN 18 123–%–1),/location/locationevent/soilobs/silt,
32
"Sodio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",/location/locationevent/soilobs/sodium,
33
Textural class,/location/locationevent/soilobs/texture,
34
Locality,/location/locationnarrative/_merge/1,
35
Observaciones,/location/notespublic,
36
Direction,/location/slopeaspect/_compass/value/_alt/1,Part files provide either this field or Direction
37
Orientación/exposicion,/location/slopeaspect/_compass/value/_alt/2,Part files provide either this field or Orientación
38
Slope,/location/slopegradient,
39
Inventory code,/location/sourceaccessioncode,
40
Collaborators,,"Need a way to store a verbatim list of people, or a function to parse it and insert it iteratively into party"
41
Coordinates,,Concatenation of Latitude (DMS) and Longitude (DMS)
42
Installed and evaluated by,,"Need a way to store a verbatim list of people, or a function to parse it and insert it iteratively into party"
43
Inventory number,,Not globally unique
44
Number of inventory (expedition),,The number of the event within the project
45
Number of stems,,Do we want to store this data?
46
Number of trees,,Do we want to store this data?
47
Related Epilocs,,"It appears to be a list of people, some with #s after them. It doesn't seem like the definition of Epiloc at <http://rithm.wikispaces.com/Tropicos.Epiloc>, which relates to individual specimens, not whole plots."
48
Soil sample,,Always empty
inputs/Madidi/maps/map.1.organisms.full.csv
1
Madidi,Veg+,Comments
2
Autor (revised),,
3
Basal area,,
4
Bole height,,
5
Circumference,,
6
Common name,,
7
Crown position,,
8
Crown shape,,
9
Determined by,,
10
Diameter,,
11
Expedition,,
12
Expedition specimen,,
13
Family (revised),,
14
Field family,,
15
Field name,,
16
Genera,,
17
Habit,,
18
Index collector,,
19
Inventory code,,
20
Inventory name,,
21
Liana presence,,
22
Number of inventory (expedition),,
23
Number of inventory (general),,
24
Number of subplot,,
25
Observations,,
26
Phenology,,
27
Plot X,,
28
Plot Y,,
29
Plot specimen,,
30
Project specimen,,
31
Qualifier,,
32
Similar specimen,,
33
Specie+autor,,
34
Species and morphotypes,,
35
Specific epithet,,
36
Specimen,,
37
Subplot X,,
38
Subplot Y,,
39
Tag number,,
40
Total height,,
41
Tree number,,
42
Trunk,,
43
"Type Inventory (C, PP, TP)",,
inputs/Madidi/maps/VegBIEN.1.organisms.csv
1
Madidi,VegBIEN:,Comments
2
Autor (revised),,** No input mapping for Autor (revised) ** 
3
Basal area,,** No input mapping for Basal area ** 
4
Bole height,,** No input mapping for Bole height ** 
5
Circumference,,** No input mapping for Circumference ** 
6
Common name,,** No input mapping for Common name ** 
7
Crown position,,** No input mapping for Crown position ** 
8
Crown shape,,** No input mapping for Crown shape ** 
9
Determined by,,** No input mapping for Determined by ** 
10
Diameter,,** No input mapping for Diameter ** 
11
Expedition,,** No input mapping for Expedition ** 
12
Expedition specimen,,** No input mapping for Expedition specimen ** 
13
Family (revised),,** No input mapping for Family (revised) ** 
14
Field family,,** No input mapping for Field family ** 
15
Field name,,** No input mapping for Field name ** 
16
Genera,,** No input mapping for Genera ** 
17
Habit,,** No input mapping for Habit ** 
18
Index collector,,** No input mapping for Index collector ** 
19
Inventory code,,** No input mapping for Inventory code ** 
20
Inventory name,,** No input mapping for Inventory name ** 
21
Liana presence,,** No input mapping for Liana presence ** 
22
Number of inventory (expedition),,** No input mapping for Number of inventory (expedition) ** 
23
Number of inventory (general),,** No input mapping for Number of inventory (general) ** 
24
Number of subplot,,** No input mapping for Number of subplot ** 
25
Observations,,** No input mapping for Observations ** 
26
Phenology,,** No input mapping for Phenology ** 
27
Plot X,,** No input mapping for Plot X ** 
28
Plot Y,,** No input mapping for Plot Y ** 
29
Plot specimen,,** No input mapping for Plot specimen ** 
30
Project specimen,,** No input mapping for Project specimen ** 
31
Qualifier,,** No input mapping for Qualifier ** 
32
Similar specimen,,** No input mapping for Similar specimen ** 
33
Specie+autor,,** No input mapping for Specie+autor ** 
34
Species and morphotypes,,** No input mapping for Species and morphotypes ** 
35
Specific epithet,,** No input mapping for Specific epithet ** 
36
Specimen,,** No input mapping for Specimen ** 
37
Subplot X,,** No input mapping for Subplot X ** 
38
Subplot Y,,** No input mapping for Subplot Y ** 
39
Tag number,,** No input mapping for Tag number ** 
40
Total height,,** No input mapping for Total height ** 
41
Tree number,,** No input mapping for Tree number ** 
42
Trunk,,** No input mapping for Trunk ** 
43
"Type Inventory (C, PP, TP)",,"** No input mapping for Type Inventory (C, PP, TP) ** "
inputs/UNCC/maps/src.specimens.csv
1
UNCC[Veg+],Veg+,Comments
2
accession,,
3
herbarium,,
4
family,,
5
genus,,
6
species,,
7
usdaRank,,
8
infrarank,,
9
infraname,,
10
SciName,,
11
authors,,
12
collector,,
13
collector1,,
14
collector2,,
15
collector3,,
16
collectno,,
17
collmonth,,
18
collday,,
19
collyear,,
20
country,,
21
state,,
22
county,,
23
campus,,
24
leaves,,
25
flower,,
26
fruit,,
27
root,,
28
locality,,
29
habitat,,
30
comment1,,
31
comment2,,
32
comment3,,
33
comment4,,
34
loanto,,
35
inorout,,
36
sheetno,,
37
cultivated,,
38
filler,,
inputs/UNCC/maps/map.specimens.csv
1
UNCC[Veg+],Veg+,Comments
2
accession,occurrenceID,
3
herbarium,institutionCode,
4
usdaRank,taxonRank/_alt/1,
5
infrarank,taxonRank/_alt/2,
6
infraname,infraspecificEpithet,
7
SciName,scientificName,
8
authors,scientificNameAuthorship,
9
collector,Collector/_merge/1,
10
collector1,Collector/_merge/2,
11
collector2,Collector/_merge/3,
12
collector3,Collector/_merge/4,
13
collectno,collectorNumber,
14
collmonth,monthCollected,
15
collday,dayCollected,
16
collyear,yearCollected,
17
campus,"fieldNotes/_merge/5/_label[label=""campus""]/value",
18
leaves,"reproductiveCondition/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"
19
flower,"reproductiveCondition/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"
20
fruit,"reproductiveCondition/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"
21
root,"reproductiveCondition/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"
22
comment1,fieldNotes/_merge/1,
23
comment2,fieldNotes/_merge/2,
24
comment3,fieldNotes/_merge/3,
25
comment4,fieldNotes/_merge/4,
26
loanto,"fieldNotes/_merge/6/_label[label=""loaned to""]/value",
27
inorout,"fieldNotes/_merge/7/_label[label=""in or out""]/value",
28
sheetno,associatedMedia,?
29
cultivated,"establishmentMeans/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values
30
filler,,"Where used, same as family"
inputs/UNCC/maps/map.specimens.full.csv
1
UNCC[Veg+],Veg+,Comments
2
collector,Collector/_merge/1,
3
collector1,Collector/_merge/2,
4
collector2,Collector/_merge/3,
5
collector3,Collector/_merge/4,
6
sheetno,associatedMedia,?
7
collectno,collectorNumber,
8
country,country
9
county,county
10
collday,dayCollected,
11
cultivated,"establishmentMeans/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values
12
family,family
13
comment1,fieldNotes/_merge/1,
14
comment2,fieldNotes/_merge/2,
15
comment3,fieldNotes/_merge/3,
16
comment4,fieldNotes/_merge/4,
17
campus,"fieldNotes/_merge/5/_label[label=""campus""]/value",
18
loanto,"fieldNotes/_merge/6/_label[label=""loaned to""]/value",
19
inorout,"fieldNotes/_merge/7/_label[label=""in or out""]/value",
20
genus,genus
21
habitat,habitat
22
infraname,infraspecificEpithet,
23
herbarium,institutionCode,
24
locality,locality
25
collmonth,monthCollected,
26
accession,occurrenceID,
27
flower,"reproductiveCondition/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"
28
fruit,"reproductiveCondition/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"
29
leaves,"reproductiveCondition/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"
30
root,"reproductiveCondition/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"
31
SciName,scientificName,
32
authors,scientificNameAuthorship,
33
species,species
34
state,state
35
usdaRank,taxonRank/_alt/1,
36
infrarank,taxonRank/_alt/2,
37
collyear,yearCollected,
38
filler,,"Where used, same as family"
inputs/UNCC/maps/VegBIEN.specimens.csv
1
UNCC[Veg+],VegBIEN:,Comments
2
accession,/location/authorlocationcode/_alt/3,
3
herbarium,/location/authorlocationcode/_alt/4/_merge/1,
4
county,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",
5
state,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",
6
country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",
7
collday,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
8
collmonth,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
9
collyear,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
10
collday,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
11
collmonth,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
12
collyear,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
13
collday,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
14
collmonth,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
15
collyear,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
16
comment1,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_merge/1,
17
comment2,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_merge/2,
18
comment3,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_merge/3,
19
comment4,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_merge/4,
20
campus,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_merge/5/_label[label=""campus""]/value",
21
loanto,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_merge/6/_label[label=""loaned to""]/value",
22
inorout,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_merge/7/_label[label=""in or out""]/value",
23
collectno,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/1,
24
herbarium,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname,
25
accession,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,
26
collectno,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/1,
27
SciName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2,
28
cultivated,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values
29
cultivated,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values
30
SciName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
31
authors,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
32
infraname,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
33
species,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
34
genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
35
family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
36
collector,/location/locationevent/taxonoccurrence/verbatimcollectorname/_merge/1,
37
collector1,/location/locationevent/taxonoccurrence/verbatimcollectorname/_merge/2,
38
collector2,/location/locationevent/taxonoccurrence/verbatimcollectorname/_merge/3,
39
collector3,/location/locationevent/taxonoccurrence/verbatimcollectorname/_merge/4,
40
locality,/location/locationnarrative/_merge/1,
41
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
42
filler,,"Where used, same as family"
43
flower,,"** No non-empty join mapping for reproductiveCondition/_map:[A=*,I=*,M=*]/value ** Main values are A, I, and M. What do they mean?"
44
fruit,,"** No non-empty join mapping for reproductiveCondition/_map:[A=*,I=*,M=*]/value ** Main values are A, I, and M. What do they mean?"
45
infrarank,,** No non-empty join mapping for taxonRank/_alt/2 ** 
46
leaves,,"** No non-empty join mapping for reproductiveCondition/_map:[A=*,I=*,M=*]/value ** Main values are A, I, and M. What do they mean?"
47
root,,"** No non-empty join mapping for reproductiveCondition/_map:[A=*,I=*,M=*]/value ** Main values are A, I, and M. What do they mean?"
48
sheetno,,** No non-empty join mapping for associatedMedia ** ?
49
usdaRank,,** No non-empty join mapping for taxonRank/_alt/1 ** 
inputs/ACAD/maps/src.specimens.csv
1
ACAD[Veg+],Veg+,Comments
2
id,,
3
basisOfRecord,,
4
identifiedBy,,
5
collectionID,,
6
class,,
7
geodeticDatum,,
8
reproductiveCondition,,
9
decimalLongitude,,
10
institutionCode,,
11
continent,,
12
recordedBy,,
13
county,,
14
order,,
15
georeferenceSources,,
16
language,,
17
georeferenceVerificationStatus,,
18
verbatimElevation,,
19
locationRemarks,,
20
dateIdentified,,
21
verbatimDepth,,
22
municipality,,
23
infraspecificEpithet,,
24
modified,,
25
type,,
26
specificEpithet,,
27
identificationRemarks,,
28
rightsHolder,,
29
recordNumber,,
30
eventDate,,
31
rights,,
32
occurrenceRemarks,,
33
habitat,,
34
family,,
35
stateProvince,,
36
scientificNameAuthorship,,
37
scientificName,,
38
taxonRank,,
39
phylum,,
40
locality,,
41
kingdom,,
42
decimalLatitude,,
43
genus,,
44
ownerInstitutionCode,,
45
collectionCode,,
46
bibliographicCitation,,
47
catalogNumber,,
48
country,,
49
dynamicProperties,,
inputs/ACAD/maps/map.specimens.csv
1
ACAD[Veg+],Veg+,Comments
inputs/ACAD/maps/map.specimens.full.csv
1
ACAD[Veg+],Veg+,Comments
2
basisOfRecord,basisOfRecord
3
bibliographicCitation,bibliographicCitation
4
catalogNumber,catalogNumber
5
class,class
6
collectionCode,collectionCode
7
collectionID,collectionID
8
continent,continent
9
country,country
10
county,county
11
dateIdentified,dateIdentified
12
decimalLatitude,decimalLatitude
13
decimalLongitude,decimalLongitude
14
dynamicProperties,dynamicProperties
15
eventDate,eventDate
16
family,family
17
genus,genus
18
geodeticDatum,geodeticDatum
19
georeferenceSources,georeferenceSources
20
georeferenceVerificationStatus,georeferenceVerificationStatus
21
habitat,habitat
22
id,id
23
identificationRemarks,identificationRemarks
24
identifiedBy,identifiedBy
25
infraspecificEpithet,infraspecificEpithet
26
institutionCode,institutionCode
27
kingdom,kingdom
28
language,language
29
locality,locality
30
locationRemarks,locationRemarks
31
modified,modified
32
municipality,municipality
33
occurrenceRemarks,occurrenceRemarks
34
order,order
35
ownerInstitutionCode,ownerInstitutionCode
36
phylum,phylum
37
recordNumber,recordNumber
38
recordedBy,recordedBy
39
reproductiveCondition,reproductiveCondition
40
rights,rights
41
rightsHolder,rightsHolder
42
scientificName,scientificName
43
scientificNameAuthorship,scientificNameAuthorship
44
specificEpithet,specificEpithet
45
stateProvince,stateProvince
46
taxonRank,taxonRank
47
type,type
48
verbatimDepth,verbatimDepth
49
verbatimElevation,verbatimElevation
inputs/ACAD/maps/VegBIEN.specimens.csv
1
ACAD[Veg+],VegBIEN:,Comments
2
id,/location/authorlocationcode/_alt/3,
3
institutionCode,/location/authorlocationcode/_alt/4/_merge/1,
4
collectionCode,/location/authorlocationcode/_alt/4/_merge/2/_merge/1,
5
collectionID,/location/authorlocationcode/_alt/4/_merge/2/_merge/2,
6
catalogNumber,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/else",
7
verbatimElevation,"/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value",
8
decimalLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",
9
decimalLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",
10
county,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",
11
stateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",
12
country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",
13
continent,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",
14
eventDate,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1,
15
eventDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1,
16
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/2,
17
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
18
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
19
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/2,
20
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname,
21
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,
22
recordNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/2,
23
scientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2,
24
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first,
25
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle,
26
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last,
27
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
28
scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
29
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
30
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
31
genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
32
family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
33
order,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",
34
class,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",
35
phylum,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",
36
kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
37
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,
38
recordedBy,/location/locationevent/taxonoccurrence/verbatimcollectorname,
39
catalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
40
locality,/location/locationnarrative/_merge/1,
41
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
42
basisOfRecord,,** No non-empty join mapping for basisOfRecord ** 
43
bibliographicCitation,,** No non-empty join mapping for bibliographicCitation ** 
44
dynamicProperties,,** No non-empty join mapping for dynamicProperties ** 
45
geodeticDatum,,** No non-empty join mapping for geodeticDatum ** 
46
georeferenceSources,,** No non-empty join mapping for georeferenceSources ** 
47
georeferenceVerificationStatus,,** No non-empty join mapping for georeferenceVerificationStatus ** 
48
identificationRemarks,,** No non-empty join mapping for identificationRemarks ** 
49
language,,** No non-empty join mapping for language ** 
50
locationRemarks,,** No non-empty join mapping for locationRemarks ** 
51
modified,,** No non-empty join mapping for modified ** 
52
municipality,,** No non-empty join mapping for municipality ** 
53
occurrenceRemarks,,** No non-empty join mapping for occurrenceRemarks ** 
54
ownerInstitutionCode,,** No non-empty join mapping for ownerInstitutionCode ** 
55
reproductiveCondition,,** No non-empty join mapping for reproductiveCondition ** 
56
rights,,** No non-empty join mapping for rights ** 
57
rightsHolder,,** No non-empty join mapping for rightsHolder ** 
58
taxonRank,,** No non-empty join mapping for taxonRank ** 
59
type,,** No non-empty join mapping for type ** 
60
verbatimDepth,,** No non-empty join mapping for verbatimDepth ** 
inputs/CVS/maps/map.1.organisms.full.csv
1
CVS,Veg+,Comments
2
locationAccuracy-m,coordinateUncertaintyInMeters,
3
county,county,
4
%cover,coverPercent,
5
realLatitude,decimalLatitude/_alt/1,
6
publicLatitude,decimalLatitude/_alt/2,
7
realLongitude,decimalLongitude/_alt/1,
8
publicLongitude,decimalLongitude/_alt/2,
9
authorObsCode,fieldNumber,
10
obsStartDate,plotEventStartDate,
11
currentTaxonName sec Weakley 2006,scientificName,
12
state,stateProvince,
13
confidentialityStatus,,
inputs/CVS/maps/VegBIEN.1.organisms.csv
1
CVS,VegBIEN:,Comments
2
authorObsCode,/location/authorlocationcode/_alt/2,
3
locationAccuracy-m,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1,
4
realLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value/_alt/1",
5
publicLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value/_alt/2",
6
realLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value/_alt/1",
7
publicLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value/_alt/2",
8
county,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",
9
state,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",
10
authorObsCode,/location/locationevent/authoreventcode,
11
obsStartDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value,
12
%cover,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover,
13
currentTaxonName sec Weakley 2006,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2,
14
currentTaxonName sec Weakley 2006,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
15
confidentialityStatus,,** No input mapping for confidentialityStatus ** 
inputs/CVS/maps/src.1.organisms.csv
1
CVS,Veg+,Comments
2
authorObsCode,,
3
obsStartDate,,
4
realLatitude,,
5
realLongitude,,
6
locationAccuracy-m,,
7
publicLatitude,,
8
publicLongitude,,
9
confidentialityStatus,,
10
state,,
11
county,,
12
currentTaxonName sec Weakley 2006,,
13
%cover,,
inputs/CVS/maps/map.1.organisms.csv
1
CVS,Veg+,Comments
2
authorObsCode,fieldNumber,
3
obsStartDate,plotEventStartDate,
4
realLatitude,decimalLatitude/_alt/1,
5
realLongitude,decimalLongitude/_alt/1,
6
locationAccuracy-m,coordinateUncertaintyInMeters,
7
publicLatitude,decimalLatitude/_alt/2,
8
publicLongitude,decimalLongitude/_alt/2,
9
confidentialityStatus,,
10
state,stateProvince,
11
county,county,
12
currentTaxonName sec Weakley 2006,scientificName,
13
%cover,coverPercent,
inputs/SALVIAS-CSV/maps/src.0.plots.csv
1
SALVIAS-CSV,Veg+,Comments
2
project,,
3
PLOT_ID,,
4
plot_code,,
5
major_geo,,
6
country,,
7
pol1,,
8
pol2,,
9
locality_description,,
10
lat_decimal,,
11
long_decimal,,
12
elev_m,,
13
elev_max_m,,
14
elev_min_m,,
15
temp_c,,
16
precip_mm,,
17
slope_aspect,,
18
slope_gradient,,
19
clay_percent,,
20
silt_percent,,
21
sand_percent,,
22
organic_percent,,
23
pH,,
24
soil_N,,
25
soil_P,,
26
soil_C,,
27
soil_K,,
28
soil_Mg,,
29
soil_Ca,,
30
soil_Na,,
31
soil_acidity,,
32
soil_base,,
33
soil_cation_cap,,
34
soil_conductivity,,
35
soil_texture,,
36
holdridge_life_zone,,
37
life_zone_code,,
38
observation_type,,
39
plot_methodology,,
40
plot_area_ha,,
41
recensused,,
42
date_start,,
43
date_finish,,
inputs/SALVIAS-CSV/maps/src.1.organisms.csv
1
SALVIAS-CSV,Veg+,Comments
2
OBSERVATION_ID,,
3
PLOT_ID,,
4
plot_code,,
5
census_no,,
6
census_date,,
7
subplot,,
8
individual_code,,
9
ind_id,,
10
tag1,,
11
tag2,,
12
x_position,,
13
y_position,,
14
voucher_string,,
15
coll_number,,
16
collector_code,,
17
coll_lastname,,
18
coll_firstname,,
19
det_type,,
20
fam_status,,
21
gen_status,,
22
species_status,,
23
family,,
24
genus,,
25
specific_epithet,,
26
specific_authority,,
27
infra_rank_1,,
28
infra_ep_1,,
29
cf_aff,,
30
comments,,
31
habit,,
32
no_of_individuals,,
33
cover_percent,,
34
intercept_cm,,
35
height_m,,
36
ht_first_branch_m,,
37
stem_tag1,,
38
stem_tag2,,
39
stem_dbh,,
40
basal_diam,,
41
stem_height_m,,
42
stem_height_first_branch_m,,
43
stem_canopy_form,,
44
stem_canopy_position,,
45
stem_liana_infestation,,
46
notes,,
47
orig_family,,
48
orig_species,,
inputs/SALVIAS-CSV/maps/map.0.plots.csv
1
SALVIAS-CSV,Veg+,Comments
2
project,projectName,
3
PLOT_ID,locationID,"Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
4
plot_code,plotName,Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
5
major_geo,continent,
6
country,country,
7
pol1,stateProvince,Brad: No; pol1=stateProvince
8
pol2,county,Brad: No pol2=countyParish
9
locality_description,locality,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"
10
lat_decimal,decimalLatitude,
11
long_decimal,decimalLongitude,
12
elev_m,verbatimElevation,Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick.
13
elev_max_m,maximumElevationInMeters,
14
elev_min_m,minimumElevationInMeters,
15
temp_c,temperature,
16
precip_mm,precipitation,
17
slope_aspect,slopeAspect,
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