Revision 4182
Added by Aaron Marcuse-Kubitza over 12 years ago
| inputs/MT/src/specimens/test.xml.ref | ||
|---|---|---|
| 1 |
Put template: |
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| 2 |
<VegBIEN> |
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| 3 |
<location id="-1"> |
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| 4 |
<authorlocationcode> |
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| 5 |
<_alt> |
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| 6 |
<3>$id</3> |
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| 7 |
<4> |
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| 8 |
<_merge> |
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| 9 |
<1>$institutionCode</1> |
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| 10 |
<2> |
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| 11 |
<_merge> |
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| 12 |
<1>$collectionCode</1> |
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| 13 |
<2>$collectionID</2> |
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| 14 |
</_merge> |
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| 15 |
</2> |
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| 16 |
</_merge> |
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| 17 |
</4> |
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| 18 |
</_alt> |
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| 19 |
</authorlocationcode> |
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| 20 |
<locationdetermination> |
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| 21 |
<namedplace_id> |
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| 22 |
<_simplifyPath> |
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| 23 |
<next>parent_id/namedplace</next> |
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| 24 |
<require>placename</require> |
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| 25 |
<path> |
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| 26 |
<namedplace> |
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| 27 |
<rank>county</rank> |
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| 28 |
<parent_id> |
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| 29 |
<namedplace> |
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| 30 |
<rank>stateProvince</rank> |
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| 31 |
<parent_id> |
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| 32 |
<namedplace> |
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| 33 |
<rank>country</rank> |
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| 34 |
<parent_id> |
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| 35 |
<namedplace> |
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| 36 |
<rank>continent</rank> |
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| 37 |
<placename>$continent</placename> |
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| 38 |
</namedplace> |
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| 39 |
</parent_id> |
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| 40 |
</namedplace> |
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| 41 |
</parent_id> |
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| 42 |
</namedplace> |
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| 43 |
</parent_id> |
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| 44 |
</namedplace> |
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| 45 |
</path> |
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| 46 |
</_simplifyPath> |
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| 47 |
</namedplace_id> |
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| 48 |
</locationdetermination> |
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| 49 |
<locationevent> |
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| 50 |
<taxonoccurrence> |
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| 51 |
<aggregateoccurrence> |
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| 52 |
<count>$individualCount</count> |
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| 53 |
<plantobservation> |
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| 54 |
<specimenreplicate> |
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| 55 |
<collectioncode_dwc> |
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| 56 |
<_merge> |
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<1>$collectionCode</1> |
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<2>$collectionID</2> |
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| 59 |
</_merge> |
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| 60 |
</collectioncode_dwc> |
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| 61 |
<institution_id><party><organizationname>$institutionCode</organizationname></party></institution_id> |
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| 62 |
<sourceaccessioncode>$id</sourceaccessioncode> |
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| 63 |
</specimenreplicate> |
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| 64 |
</plantobservation> |
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| 65 |
</aggregateoccurrence> |
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| 66 |
<iscultivated> |
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| 67 |
<_map> |
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| 68 |
<cultivated>t</cultivated> |
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| 69 |
<wild>f</wild> |
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| 70 |
<*></*> |
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| 71 |
<value>$establishmentMeans</value> |
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| 72 |
</_map> |
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| 73 |
</iscultivated> |
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| 74 |
<isnative> |
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| 75 |
<_map> |
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<native>t</native> |
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<exotic>f</exotic> |
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| 78 |
<*></*> |
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<value>$establishmentMeans</value> |
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| 80 |
</_map> |
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| 81 |
</isnative> |
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| 82 |
<taxondetermination> |
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| 83 |
<isoriginal>true</isoriginal> |
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| 84 |
<role>identifier</role> |
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| 85 |
<plantconcept_id> |
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| 86 |
<plantconcept> |
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| 87 |
<plantname_id> |
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| 88 |
<_simplifyPath> |
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| 89 |
<next>parent_id/plantname</next> |
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| 90 |
<require>plantname</require> |
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| 91 |
<path> |
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| 92 |
<plantname> |
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| 93 |
<rank>binomial</rank> |
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| 94 |
<parent_id> |
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| 95 |
<plantname> |
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| 96 |
<rank>authority</rank> |
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| 97 |
<parent_id> |
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| 98 |
<plantname> |
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| 99 |
<rank>subspecies</rank> |
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| 100 |
<parent_id> |
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| 101 |
<plantname> |
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| 102 |
<rank>species</rank> |
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| 103 |
<parent_id> |
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| 104 |
<plantname> |
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| 105 |
<rank>genus</rank> |
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| 106 |
<plantname>$genus</plantname> |
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| 107 |
<parent_id> |
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| 108 |
<plantname> |
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| 109 |
<rank>family</rank> |
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| 110 |
<plantname>$family</plantname> |
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| 111 |
</plantname> |
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| 112 |
</parent_id> |
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| 113 |
</plantname> |
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| 114 |
</parent_id> |
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| 115 |
</plantname> |
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| 116 |
</parent_id> |
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| 117 |
</plantname> |
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| 118 |
</parent_id> |
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| 119 |
</plantname> |
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| 120 |
</parent_id> |
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| 121 |
</plantname> |
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| 122 |
</path> |
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| 123 |
</_simplifyPath> |
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| 124 |
</plantname_id> |
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| 125 |
</plantconcept> |
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| 126 |
</plantconcept_id> |
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| 127 |
</taxondetermination> |
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| 128 |
</taxonoccurrence> |
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| 129 |
</locationevent> |
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| 130 |
<locationnarrative>$locality</locationnarrative> |
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| 131 |
</location> |
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| 132 |
</VegBIEN> |
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| 133 |
Inserted 22 new rows into database |
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| inputs/MT/src/specimens/VegBIEN.csv | ||
|---|---|---|
| 1 |
MT[Veg+],VegBIEN:,Comments |
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| 2 |
id,/location/authorlocationcode/_alt/3, |
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| 3 |
institutionCode,/location/authorlocationcode/_alt/4/_merge/1, |
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| 4 |
collectionCode,/location/authorlocationcode/_alt/4/_merge/2/_merge/1, |
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| 5 |
collectionID,/location/authorlocationcode/_alt/4/_merge/2/_merge/2, |
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| 6 |
continent,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename", |
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| 7 |
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
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| 8 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
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| 9 |
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/2, |
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| 10 |
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
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| 11 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
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| 12 |
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value", |
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| 13 |
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value", |
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| 14 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname", |
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| 15 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname", |
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| 16 |
locality,/location/locationnarrative/_merge/1, |
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| 17 |
basisOfRecord,,** No join mapping for basisOfRecord ** |
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| 18 |
countryCode,,** No join mapping for countryCode ** |
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| 19 |
datasetName,,** No join mapping for datasetName ** |
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| 20 |
language,,** No join mapping for language ** |
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| 21 |
occurrenceRemarks,,** No join mapping for occurrenceRemarks ** |
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| 22 |
rights,,** No join mapping for rights ** |
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| 23 |
rightsHolder,,** No join mapping for rightsHolder ** |
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| 24 |
type,,** No join mapping for type ** |
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| inputs/MT/src/specimens/src.csv | ||
|---|---|---|
| 1 |
MT[Veg+],Veg+,Comments |
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| 2 |
id,, |
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| 3 |
establishmentMeans,, |
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| 4 |
locality,, |
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| 5 |
language,, |
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| 6 |
collectionID,, |
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| 7 |
occurrenceRemarks,, |
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| 8 |
type,, |
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| 9 |
institutionCode,, |
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| 10 |
rights,, |
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| 11 |
family,, |
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| 12 |
continent,, |
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| 13 |
collectionCode,, |
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| 14 |
datasetName,, |
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| 15 |
rightsHolder,, |
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| 16 |
genus,, |
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| 17 |
basisOfRecord,, |
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| 18 |
individualCount,, |
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| 19 |
countryCode,, |
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| inputs/MT/src/specimens/map.csv | ||
|---|---|---|
| 1 |
MT[Veg+],Veg+,Comments |
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| inputs/MT/src/specimens/map.full.csv | ||
|---|---|---|
| 1 |
MT[Veg+],Veg+,Comments |
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| 2 |
basisOfRecord,basisOfRecord |
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| 3 |
collectionCode,collectionCode |
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| 4 |
collectionID,collectionID |
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| 5 |
continent,continent |
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| 6 |
countryCode,countryCode |
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| 7 |
datasetName,datasetName |
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| 8 |
establishmentMeans,establishmentMeans |
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| 9 |
family,family |
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| 10 |
genus,genus |
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| 11 |
id,id |
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| 12 |
individualCount,individualCount |
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| 13 |
institutionCode,institutionCode |
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| 14 |
language,language |
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| 15 |
locality,locality |
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| 16 |
occurrenceRemarks,occurrenceRemarks |
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| 17 |
rights,rights |
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| 18 |
rightsHolder,rightsHolder |
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| 19 |
type,type |
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| inputs/XAL/src/digir.specimens.xml.make | ||
|---|---|---|
| 1 |
#!/bin/sh |
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| 2 |
# Downloads XAL data using DiGIR |
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| 3 |
# Usage: env [start=...] [n=...] self >out.xml 2>>log |
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| 4 |
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| 5 |
selfDir="$(dirname -- "$0")" |
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| 6 |
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| 7 |
export \ |
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| 8 |
url=http://remib.ecologia.edu.mx/digir/DiGIR.php \ |
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| 9 |
resource=IE-XAL-HERBARIO \ |
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| 10 |
chunk_size=200 |
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| 11 |
# the server often drops the connection if too much data is requested |
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| 12 |
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| 13 |
"$selfDir/../../../bin/digir_client" |
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| 14 | 0 | |
| inputs/XAL/src/specimens/src.csv | ||
|---|---|---|
| 1 |
"XAL[Veg+,darwin:]:/content/record/",Original name |
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| 2 |
DateLastModified,darwin:DateLastModified |
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| 3 |
InstitutionCode,darwin:InstitutionCode |
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| 4 |
CollectionCode,darwin:CollectionCode |
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| 5 |
CatalogNumber,darwin:CatalogNumber |
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| 6 |
ScientificName,darwin:ScientificName |
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| 7 |
BasisOfRecord,darwin:BasisOfRecord |
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| 8 |
Kingdom,darwin:Kingdom |
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| 9 |
Phylum,darwin:Phylum |
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| 10 |
Class,darwin:Class |
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| 11 |
Order,darwin:Order |
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| 12 |
Family,darwin:Family |
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| 13 |
Genus,darwin:Genus |
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| 14 |
Species,darwin:Species |
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| 15 |
Subspecies,darwin:Subspecies |
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| 16 |
ScientificNameAuthor,darwin:ScientificNameAuthor |
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| 17 |
IdentifiedBy,darwin:IdentifiedBy |
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| 18 |
YearIdentified,darwin:YearIdentified |
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| 19 |
MonthIdentified,darwin:MonthIdentified |
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| 20 |
DayIdentified,darwin:DayIdentified |
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| 21 |
TypeStatus,darwin:TypeStatus |
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| 22 |
CollectorNumber,darwin:CollectorNumber |
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| 23 |
FieldNumber,darwin:FieldNumber |
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| 24 |
Collector,darwin:Collector |
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| 25 |
YearCollected,darwin:YearCollected |
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| 26 |
MonthCollected,darwin:MonthCollected |
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| 27 |
DayCollected,darwin:DayCollected |
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| 28 |
JulianDay,darwin:JulianDay |
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| 29 |
TimeOfDay,darwin:TimeOfDay |
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| 30 |
ContinentOcean,darwin:ContinentOcean |
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| 31 |
Country,darwin:Country |
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| 32 |
StateProvince,darwin:StateProvince |
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| 33 |
County,darwin:County |
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| 34 |
Locality,darwin:Locality |
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| 35 |
Longitude,darwin:Longitude |
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| 36 |
Latitude,darwin:Latitude |
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| 37 |
CoordinatePrecision,darwin:CoordinatePrecision |
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| 38 |
MinimumElevation,darwin:MinimumElevation |
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| 39 |
MaximumElevation,darwin:MaximumElevation |
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| 40 |
MinimumDepth,darwin:MinimumDepth |
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| 41 |
MaximumDepth,darwin:MaximumDepth |
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| 42 |
Sex,darwin:Sex |
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| 43 |
PreparationType,darwin:PreparationType |
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| 44 |
IndividualCount,darwin:IndividualCount |
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| 45 |
PreviousCatalogNumber,darwin:PreviousCatalogNumber |
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| 46 |
RelationshipType,darwin:RelationshipType |
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| 47 |
RelatedCatalogItem,darwin:RelatedCatalogItem |
|
| 48 |
Notes,darwin:Notes |
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| inputs/XAL/src/specimens/map.csv | ||
|---|---|---|
| 1 |
"XAL[Veg+,darwin:]:/content/record/",Veg+,Comments |
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| 2 |
CollectorNumber,recordNumber/_alt/1, |
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| 3 |
FieldNumber,recordNumber/_alt/2,"This historical DwC term (http://rs.tdwg.org/dwc/terms/history/index.htm#fieldNumber-2009-04-24) has close to the same meaning as recordNumber (http://rs.tdwg.org/dwc/terms/#recordNumber). It is also unused: `grep -F ""<darwin:FieldNumber>"" inputs/XAL/src/digir.specimens.xml` returns no lines." |
|
| inputs/XAL/src/specimens/map.full.csv | ||
|---|---|---|
| 1 |
"XAL[Veg+,darwin:]:/content/record/",Veg+,Comments |
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| 2 |
BasisOfRecord,BasisOfRecord |
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| 3 |
CatalogNumber,CatalogNumber |
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| 4 |
Class,Class |
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| 5 |
CollectionCode,CollectionCode |
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| 6 |
Collector,Collector |
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| 7 |
ContinentOcean,ContinentOcean |
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| 8 |
CoordinatePrecision,CoordinatePrecision |
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| 9 |
Country,Country |
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| 10 |
County,County |
|
| 11 |
DateLastModified,DateLastModified |
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| 12 |
DayCollected,DayCollected |
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| 13 |
DayIdentified,DayIdentified |
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| 14 |
Family,Family |
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| 15 |
Genus,Genus |
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| 16 |
IdentifiedBy,IdentifiedBy |
|
| 17 |
IndividualCount,IndividualCount |
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| 18 |
InstitutionCode,InstitutionCode |
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| 19 |
JulianDay,JulianDay |
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| 20 |
Kingdom,Kingdom |
|
| 21 |
Latitude,Latitude |
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| 22 |
Locality,Locality |
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| 23 |
Longitude,Longitude |
|
| 24 |
MaximumDepth,MaximumDepth |
|
| 25 |
MaximumElevation,MaximumElevation |
|
| 26 |
MinimumDepth,MinimumDepth |
|
| 27 |
MinimumElevation,MinimumElevation |
|
| 28 |
MonthCollected,MonthCollected |
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| 29 |
MonthIdentified,MonthIdentified |
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| 30 |
Notes,Notes |
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| 31 |
Order,Order |
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| 32 |
Phylum,Phylum |
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| 33 |
PreparationType,PreparationType |
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| 34 |
PreviousCatalogNumber,PreviousCatalogNumber |
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| 35 |
RelatedCatalogItem,RelatedCatalogItem |
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| 36 |
RelationshipType,RelationshipType |
|
| 37 |
ScientificName,ScientificName |
|
| 38 |
ScientificNameAuthor,ScientificNameAuthor |
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| 39 |
Sex,Sex |
|
| 40 |
Species,Species |
|
| 41 |
StateProvince,StateProvince |
|
| 42 |
Subspecies,Subspecies |
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| 43 |
TimeOfDay,TimeOfDay |
|
| 44 |
TypeStatus,TypeStatus |
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| 45 |
YearCollected,YearCollected |
|
| 46 |
YearIdentified,YearIdentified |
|
| 47 |
CollectorNumber,recordNumber/_alt/1, |
|
| 48 |
FieldNumber,recordNumber/_alt/2,"This historical DwC term (http://rs.tdwg.org/dwc/terms/history/index.htm#fieldNumber-2009-04-24) has close to the same meaning as recordNumber (http://rs.tdwg.org/dwc/terms/#recordNumber). It is also unused: `grep -F ""<darwin:FieldNumber>"" inputs/XAL/src/digir.specimens.xml` returns no lines." |
|
| inputs/XAL/src/specimens/test.xml.ref | ||
|---|---|---|
| 1 |
Put template: |
|
| 2 |
<VegBIEN> |
|
| 3 |
<location id="-1"> |
|
| 4 |
<authorlocationcode> |
|
| 5 |
<_merge> |
|
| 6 |
<1>$InstitutionCode</1> |
|
| 7 |
<2>$CollectionCode</2> |
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| 8 |
<3>$CatalogNumber</3> |
|
| 9 |
</_merge> |
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| 10 |
</authorlocationcode> |
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| 11 |
<elevation> |
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| 12 |
<_avg> |
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| 13 |
<max> |
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| 14 |
<_units> |
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| 15 |
<default>m</default> |
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| 16 |
<to>m</to> |
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| 17 |
<to></to> |
|
| 18 |
<value> |
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| 19 |
<_replace> |
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| 20 |
<\bca\.?></\bca\.?> |
|
| 21 |
<value>$MaximumElevation</value> |
|
| 22 |
</_replace> |
|
| 23 |
</value> |
|
| 24 |
</_units> |
|
| 25 |
</max> |
|
| 26 |
<min> |
|
| 27 |
<_units> |
|
| 28 |
<default>m</default> |
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| 29 |
<to>m</to> |
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| 30 |
<to></to> |
|
| 31 |
<value> |
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| 32 |
<_rangeStart> |
|
| 33 |
<value> |
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| 34 |
<_replace> |
|
| 35 |
<\bca\.?></\bca\.?> |
|
| 36 |
<value>$MinimumElevation</value> |
|
| 37 |
</_replace> |
|
| 38 |
</value> |
|
| 39 |
</_rangeStart> |
|
| 40 |
</value> |
|
| 41 |
</_units> |
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| 42 |
</min> |
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| 43 |
</_avg> |
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| 44 |
</elevation> |
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| 45 |
<elevationrange> |
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| 46 |
<_range> |
|
| 47 |
<from> |
|
| 48 |
<_units> |
|
| 49 |
<default>m</default> |
|
| 50 |
<to>m</to> |
|
| 51 |
<to></to> |
|
| 52 |
<value> |
|
| 53 |
<_rangeStart> |
|
| 54 |
<value> |
|
| 55 |
<_replace> |
|
| 56 |
<\bca\.?></\bca\.?> |
|
| 57 |
<value>$MinimumElevation</value> |
|
| 58 |
</_replace> |
|
| 59 |
</value> |
|
| 60 |
</_rangeStart> |
|
| 61 |
</value> |
|
| 62 |
</_units> |
|
| 63 |
</from> |
|
| 64 |
<to> |
|
| 65 |
<_units> |
|
| 66 |
<default>m</default> |
|
| 67 |
<to>m</to> |
|
| 68 |
<to></to> |
|
| 69 |
<value> |
|
| 70 |
<_alt> |
|
| 71 |
<1> |
|
| 72 |
<_replace> |
|
| 73 |
<\bca\.?></\bca\.?> |
|
| 74 |
<value>$MaximumElevation</value> |
|
| 75 |
</_replace> |
|
| 76 |
</1> |
|
| 77 |
<2> |
|
| 78 |
<_rangeEnd> |
|
| 79 |
<value> |
|
| 80 |
<_replace> |
|
| 81 |
<\bca\.?></\bca\.?> |
|
| 82 |
<value>$MinimumElevation</value> |
|
| 83 |
</_replace> |
|
| 84 |
</value> |
|
| 85 |
</_rangeEnd> |
|
| 86 |
</2> |
|
| 87 |
</_alt> |
|
| 88 |
</value> |
|
| 89 |
</_units> |
|
| 90 |
</to> |
|
| 91 |
</_range> |
|
| 92 |
</elevationrange> |
|
| 93 |
<locationdetermination> |
|
| 94 |
<coordsaccuracy><_noCV><value>$CoordinatePrecision</value></_noCV></coordsaccuracy> |
|
| 95 |
<latitude> |
|
| 96 |
<_nullIf> |
|
| 97 |
<null>0</null> |
|
| 98 |
<type>float</type> |
|
| 99 |
<value>$Latitude</value> |
|
| 100 |
</_nullIf> |
|
| 101 |
</latitude> |
|
| 102 |
<longitude> |
|
| 103 |
<_nullIf> |
|
| 104 |
<null>0</null> |
|
| 105 |
<type>float</type> |
|
| 106 |
<value>$Longitude</value> |
|
| 107 |
</_nullIf> |
|
| 108 |
</longitude> |
|
| 109 |
<namedplace_id> |
|
| 110 |
<_simplifyPath> |
|
| 111 |
<next>parent_id/namedplace</next> |
|
| 112 |
<require>placename</require> |
|
| 113 |
<path> |
|
| 114 |
<namedplace> |
|
| 115 |
<rank>county</rank> |
|
| 116 |
<placename>$County</placename> |
|
| 117 |
<parent_id> |
|
| 118 |
<namedplace> |
|
| 119 |
<rank>stateProvince</rank> |
|
| 120 |
<placename>$StateProvince</placename> |
|
| 121 |
<parent_id> |
|
| 122 |
<namedplace> |
|
| 123 |
<rank>country</rank> |
|
| 124 |
<placename>$Country</placename> |
|
| 125 |
<parent_id> |
|
| 126 |
<namedplace> |
|
| 127 |
<rank>continent</rank> |
|
| 128 |
<placename>$ContinentOcean</placename> |
|
| 129 |
</namedplace> |
|
| 130 |
</parent_id> |
|
| 131 |
</namedplace> |
|
| 132 |
</parent_id> |
|
| 133 |
</namedplace> |
|
| 134 |
</parent_id> |
|
| 135 |
</namedplace> |
|
| 136 |
</path> |
|
| 137 |
</_simplifyPath> |
|
| 138 |
</namedplace_id> |
|
| 139 |
</locationdetermination> |
|
| 140 |
<locationevent> |
|
| 141 |
<obsenddate> |
|
| 142 |
<_date> |
|
| 143 |
<date> |
|
| 144 |
<_dateRangeEnd> |
|
| 145 |
<value> |
|
| 146 |
<_date> |
|
| 147 |
<day> |
|
| 148 |
<_nullIf> |
|
| 149 |
<null>0</null> |
|
| 150 |
<type>float</type> |
|
| 151 |
<value>$DayCollected</value> |
|
| 152 |
</_nullIf> |
|
| 153 |
</day> |
|
| 154 |
<month> |
|
| 155 |
<_nullIf> |
|
| 156 |
<null>0</null> |
|
| 157 |
<type>float</type> |
|
| 158 |
<value>$MonthCollected</value> |
|
| 159 |
</_nullIf> |
|
| 160 |
</month> |
|
| 161 |
<year> |
|
| 162 |
<_nullIf> |
|
| 163 |
<null>0</null> |
|
| 164 |
<type>float</type> |
|
| 165 |
<value>$YearCollected</value> |
|
| 166 |
</_nullIf> |
|
| 167 |
</year> |
|
| 168 |
</_date> |
|
| 169 |
</value> |
|
| 170 |
</_dateRangeEnd> |
|
| 171 |
</date> |
|
| 172 |
</_date> |
|
| 173 |
</obsenddate> |
|
| 174 |
<obsstartdate> |
|
| 175 |
<_date> |
|
| 176 |
<date> |
|
| 177 |
<_dateRangeStart> |
|
| 178 |
<value> |
|
| 179 |
<_date> |
|
| 180 |
<day> |
|
| 181 |
<_nullIf> |
|
| 182 |
<null>0</null> |
|
| 183 |
<type>float</type> |
|
| 184 |
<value>$DayCollected</value> |
|
| 185 |
</_nullIf> |
|
| 186 |
</day> |
|
| 187 |
<month> |
|
| 188 |
<_nullIf> |
|
| 189 |
<null>0</null> |
|
| 190 |
<type>float</type> |
|
| 191 |
<value>$MonthCollected</value> |
|
| 192 |
</_nullIf> |
|
| 193 |
</month> |
|
| 194 |
<year> |
|
| 195 |
<_nullIf> |
|
| 196 |
<null>0</null> |
|
| 197 |
<type>float</type> |
|
| 198 |
<value>$YearCollected</value> |
|
| 199 |
</_nullIf> |
|
| 200 |
</year> |
|
| 201 |
</_date> |
|
| 202 |
</value> |
|
| 203 |
</_dateRangeStart> |
|
| 204 |
</date> |
|
| 205 |
</_date> |
|
| 206 |
</obsstartdate> |
|
| 207 |
<taxonoccurrence> |
|
| 208 |
<aggregateoccurrence> |
|
| 209 |
<collectiondate> |
|
| 210 |
<_date> |
|
| 211 |
<date> |
|
| 212 |
<_date> |
|
| 213 |
<day> |
|
| 214 |
<_nullIf> |
|
| 215 |
<null>0</null> |
|
| 216 |
<type>float</type> |
|
| 217 |
<value>$DayCollected</value> |
|
| 218 |
</_nullIf> |
|
| 219 |
</day> |
|
| 220 |
<month> |
|
| 221 |
<_nullIf> |
|
| 222 |
<null>0</null> |
|
| 223 |
<type>float</type> |
|
| 224 |
<value>$MonthCollected</value> |
|
| 225 |
</_nullIf> |
|
| 226 |
</month> |
|
| 227 |
<year> |
|
| 228 |
<_nullIf> |
|
| 229 |
<null>0</null> |
|
| 230 |
<type>float</type> |
|
| 231 |
<value>$YearCollected</value> |
|
| 232 |
</_nullIf> |
|
| 233 |
</year> |
|
| 234 |
</_date> |
|
| 235 |
</date> |
|
| 236 |
</_date> |
|
| 237 |
</collectiondate> |
|
| 238 |
<count>$IndividualCount</count> |
|
| 239 |
<notes>$Notes</notes> |
|
| 240 |
<plantobservation> |
|
| 241 |
<collectionnumber> |
|
| 242 |
<_alt> |
|
| 243 |
<1>$CollectorNumber</1> |
|
| 244 |
<2>$FieldNumber</2> |
|
| 245 |
</_alt> |
|
| 246 |
</collectionnumber> |
|
| 247 |
<definedvalue fkey="tablerecord_id"> |
|
| 248 |
<userdefined_id> |
|
| 249 |
<userdefined> |
|
| 250 |
<tablename>plantobservation</tablename> |
|
| 251 |
<userdefinedname>sex</userdefinedname> |
|
| 252 |
</userdefined> |
|
| 253 |
</userdefined_id> |
|
| 254 |
<definedvalue>$Sex</definedvalue> |
|
| 255 |
</definedvalue> |
|
| 256 |
<specimenreplicate> |
|
| 257 |
<catalognumber_dwc>$CatalogNumber</catalognumber_dwc> |
|
| 258 |
<collectioncode_dwc>$CollectionCode</collectioncode_dwc> |
|
| 259 |
<institution_id><party><organizationname>$InstitutionCode</organizationname></party></institution_id> |
|
| 260 |
</specimenreplicate> |
|
| 261 |
</plantobservation> |
|
| 262 |
</aggregateoccurrence> |
|
| 263 |
<authortaxoncode> |
|
| 264 |
<_alt> |
|
| 265 |
<1> |
|
| 266 |
<_alt> |
|
| 267 |
<1>$CollectorNumber</1> |
|
| 268 |
<2>$FieldNumber</2> |
|
| 269 |
</_alt> |
|
| 270 |
</1> |
|
| 271 |
<2>$ScientificName</2> |
|
| 272 |
</_alt> |
|
| 273 |
</authortaxoncode> |
|
| 274 |
<taxondetermination> |
|
| 275 |
<isoriginal>true</isoriginal> |
|
| 276 |
<role>identifier</role> |
|
| 277 |
<party_id> |
|
| 278 |
<party> |
|
| 279 |
<givenname><_namePart><first>$IdentifiedBy</first></_namePart></givenname> |
|
| 280 |
<middlename><_namePart><middle>$IdentifiedBy</middle></_namePart></middlename> |
|
| 281 |
<surname><_namePart><last>$IdentifiedBy</last></_namePart></surname> |
|
| 282 |
</party> |
|
| 283 |
</party_id> |
|
| 284 |
<plantconcept_id> |
|
| 285 |
<plantconcept> |
|
| 286 |
<plantname_id> |
|
| 287 |
<_simplifyPath> |
|
| 288 |
<next>parent_id/plantname</next> |
|
| 289 |
<require>plantname</require> |
|
| 290 |
<path> |
|
| 291 |
<plantname> |
|
| 292 |
<rank>binomial</rank> |
|
| 293 |
<plantname>$ScientificName</plantname> |
|
| 294 |
<parent_id> |
|
| 295 |
<plantname> |
|
| 296 |
<rank>authority</rank> |
|
| 297 |
<plantname>$ScientificNameAuthor</plantname> |
|
| 298 |
<parent_id> |
|
| 299 |
<plantname> |
|
| 300 |
<rank>subspecies</rank> |
|
| 301 |
<plantname>$Subspecies</plantname> |
|
| 302 |
<parent_id> |
|
| 303 |
<plantname> |
|
| 304 |
<rank>species</rank> |
|
| 305 |
<plantname>$Species</plantname> |
|
| 306 |
<parent_id> |
|
| 307 |
<plantname> |
|
| 308 |
<rank>genus</rank> |
|
| 309 |
<plantname>$Genus</plantname> |
|
| 310 |
<parent_id> |
|
| 311 |
<plantname> |
|
| 312 |
<rank>family</rank> |
|
| 313 |
<plantname>$Family</plantname> |
|
| 314 |
<parent_id> |
|
| 315 |
<plantname> |
|
| 316 |
<rank>order</rank> |
|
| 317 |
<plantname>$Order</plantname> |
|
| 318 |
<parent_id> |
|
| 319 |
<plantname> |
|
| 320 |
<rank>class</rank> |
|
| 321 |
<plantname>$Class</plantname> |
|
| 322 |
<parent_id> |
|
| 323 |
<plantname> |
|
| 324 |
<rank>subkingdom</rank> |
|
| 325 |
<plantname>$Phylum</plantname> |
|
| 326 |
<parent_id> |
|
| 327 |
<plantname> |
|
| 328 |
<rank>kingdom</rank> |
|
| 329 |
<plantname>$Kingdom</plantname> |
|
| 330 |
</plantname> |
|
| 331 |
</parent_id> |
|
| 332 |
</plantname> |
|
| 333 |
</parent_id> |
|
| 334 |
</plantname> |
|
| 335 |
</parent_id> |
|
| 336 |
</plantname> |
|
| 337 |
</parent_id> |
|
| 338 |
</plantname> |
|
| 339 |
</parent_id> |
|
| 340 |
</plantname> |
|
| 341 |
</parent_id> |
|
| 342 |
</plantname> |
|
| 343 |
</parent_id> |
|
| 344 |
</plantname> |
|
| 345 |
</parent_id> |
|
| 346 |
</plantname> |
|
| 347 |
</parent_id> |
|
| 348 |
</plantname> |
|
| 349 |
</path> |
|
| 350 |
</_simplifyPath> |
|
| 351 |
</plantname_id> |
|
| 352 |
</plantconcept> |
|
| 353 |
</plantconcept_id> |
|
| 354 |
<determinationdate> |
|
| 355 |
<_date> |
|
| 356 |
<date> |
|
| 357 |
<_dateRangeStart> |
|
| 358 |
<value> |
|
| 359 |
<_date> |
|
| 360 |
<day> |
|
| 361 |
<_nullIf> |
|
| 362 |
<null>0</null> |
|
| 363 |
<type>float</type> |
|
| 364 |
<value>$DayIdentified</value> |
|
| 365 |
</_nullIf> |
|
| 366 |
</day> |
|
| 367 |
<month> |
|
| 368 |
<_nullIf> |
|
| 369 |
<null>0</null> |
|
| 370 |
<type>float</type> |
|
| 371 |
<value>$MonthIdentified</value> |
|
| 372 |
</_nullIf> |
|
| 373 |
</month> |
|
| 374 |
<year> |
|
| 375 |
<_nullIf> |
|
| 376 |
<null>0</null> |
|
| 377 |
<type>float</type> |
|
| 378 |
<value>$YearIdentified</value> |
|
| 379 |
</_nullIf> |
|
| 380 |
</year> |
|
| 381 |
</_date> |
|
| 382 |
</value> |
|
| 383 |
</_dateRangeStart> |
|
| 384 |
</date> |
|
| 385 |
</_date> |
|
| 386 |
</determinationdate> |
|
| 387 |
</taxondetermination> |
|
| 388 |
<verbatimcollectorname>$Collector</verbatimcollectorname> |
|
| 389 |
<voucher><specimenreplicate_id><specimenreplicate><catalognumber_dwc/></specimenreplicate></specimenreplicate_id></voucher> |
|
| 390 |
</taxonoccurrence> |
|
| 391 |
<waterdepth> |
|
| 392 |
<_avg> |
|
| 393 |
<max> |
|
| 394 |
<_units> |
|
| 395 |
<default>m</default> |
|
| 396 |
<to>m</to> |
|
| 397 |
<to></to> |
|
| 398 |
<value> |
|
| 399 |
<_replace> |
|
| 400 |
<\bca\.?></\bca\.?> |
|
| 401 |
<value>$MaximumDepth</value> |
|
| 402 |
</_replace> |
|
| 403 |
</value> |
|
| 404 |
</_units> |
|
| 405 |
</max> |
|
| 406 |
<min> |
|
| 407 |
<_units> |
|
| 408 |
<default>m</default> |
|
| 409 |
<to>m</to> |
|
| 410 |
<to></to> |
|
| 411 |
<value> |
|
| 412 |
<_replace> |
|
| 413 |
<\bca\.?></\bca\.?> |
|
| 414 |
<value>$MinimumDepth</value> |
|
| 415 |
</_replace> |
|
| 416 |
</value> |
|
| 417 |
</_units> |
|
| 418 |
</min> |
|
| 419 |
</_avg> |
|
| 420 |
</waterdepth> |
|
| 421 |
</locationevent> |
|
| 422 |
<locationnarrative>$Locality</locationnarrative> |
|
| 423 |
</location> |
|
| 424 |
</VegBIEN> |
|
| 425 |
Inserted 47 new rows into database |
|
| inputs/XAL/src/specimens/VegBIEN.csv | ||
|---|---|---|
| 1 |
"XAL[Veg+,darwin:]:/content/record/",VegBIEN:,Comments |
|
| 2 |
InstitutionCode,/location/authorlocationcode/_alt/4/_merge/1, |
|
| 3 |
CollectionCode,/location/authorlocationcode/_alt/4/_merge/2/_merge/1, |
|
| 4 |
CatalogNumber,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/else", |
|
| 5 |
MaximumElevation,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
|
| 6 |
MinimumElevation,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value", |
|
| 7 |
MinimumElevation,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value", |
|
| 8 |
MaximumElevation,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1/_replace:[""\bca\.?""=]/value", |
|
| 9 |
MinimumElevation,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value", |
|
| 10 |
CoordinatePrecision,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2, |
|
| 11 |
Latitude,"/location/locationdetermination/latitude/_alt/2/_nullIf:[null=0,type=float]/value", |
|
| 12 |
Longitude,"/location/locationdetermination/longitude/_alt/2/_nullIf:[null=0,type=float]/value", |
|
| 13 |
County,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename", |
|
| 14 |
StateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename", |
|
| 15 |
Country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename", |
|
| 16 |
ContinentOcean,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename", |
|
| 17 |
DayCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 18 |
MonthCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 19 |
YearCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 20 |
DayCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 21 |
MonthCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 22 |
YearCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 23 |
DayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 24 |
MonthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 25 |
YearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 26 |
IndividualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
|
| 27 |
Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
|
| 28 |
CollectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/1, |
|
| 29 |
FieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/2,"This historical DwC term (http://rs.tdwg.org/dwc/terms/history/index.htm#fieldNumber-2009-04-24) has close to the same meaning as recordNumber (http://rs.tdwg.org/dwc/terms/#recordNumber). It is also unused: `grep -F ""<darwin:FieldNumber>"" inputs/XAL/src/digir.specimens.xml` returns no lines." |
|
| 30 |
Sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
|
| 31 |
CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
|
| 32 |
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
|
| 33 |
InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
|
| 34 |
CollectorNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/1, |
|
| 35 |
FieldNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/2,"This historical DwC term (http://rs.tdwg.org/dwc/terms/history/index.htm#fieldNumber-2009-04-24) has close to the same meaning as recordNumber (http://rs.tdwg.org/dwc/terms/#recordNumber). It is also unused: `grep -F ""<darwin:FieldNumber>"" inputs/XAL/src/digir.specimens.xml` returns no lines." |
|
| 36 |
ScientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2, |
|
| 37 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first, |
|
| 38 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle, |
|
| 39 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last, |
|
| 40 |
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname", |
|
| 41 |
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname/_alt/2", |
|
| 42 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname", |
|
| 43 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname", |
|
| 44 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname", |
|
| 45 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname", |
|
| 46 |
Order,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname", |
|
| 47 |
Class,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname", |
|
| 48 |
Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname", |
|
| 49 |
Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname", |
|
| 50 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 51 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 52 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 53 |
Collector,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
|
| 54 |
CatalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
|
| 55 |
MaximumDepth,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
|
| 56 |
MinimumDepth,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
|
| 57 |
Locality,/location/locationnarrative/_merge/1, |
|
| 58 |
BasisOfRecord,,** No join mapping for BasisOfRecord ** |
|
| 59 |
DateLastModified,,** No join mapping for DateLastModified ** |
|
| 60 |
JulianDay,,** No join mapping for JulianDay ** |
|
| 61 |
PreparationType,,** No join mapping for PreparationType ** |
|
| 62 |
PreviousCatalogNumber,,** No join mapping for PreviousCatalogNumber ** |
|
| 63 |
RelatedCatalogItem,,** No join mapping for RelatedCatalogItem ** |
|
| 64 |
RelationshipType,,** No join mapping for RelationshipType ** |
|
| 65 |
TimeOfDay,,** No join mapping for TimeOfDay ** |
|
| 66 |
TypeStatus,,** No join mapping for TypeStatus ** |
|
| inputs/NY/src/specimens/test.xml.ref | ||
|---|---|---|
| 1 |
Put template: |
|
| 2 |
<VegBIEN> |
|
| 3 |
<location id="-1"> |
|
| 4 |
<authorlocationcode> |
|
| 5 |
<_alt> |
|
| 6 |
<3>$UniqueNYInternalRecordNumber</3> |
|
| 7 |
<4> |
|
| 8 |
<_merge> |
|
| 9 |
<1>$InstitutionCode</1> |
|
| 10 |
<2>$CollectionCode</2> |
|
| 11 |
<3>$CatalogNumber</3> |
|
| 12 |
</_merge> |
|
| 13 |
</4> |
|
| 14 |
</_alt> |
|
| 15 |
</authorlocationcode> |
|
| 16 |
<elevation> |
|
| 17 |
<_avg> |
|
| 18 |
<max> |
|
| 19 |
<_units> |
|
| 20 |
<default>m</default> |
|
| 21 |
<to>m</to> |
|
| 22 |
<to></to> |
|
| 23 |
<value> |
|
| 24 |
<_replace> |
|
| 25 |
<\bca\.?></\bca\.?> |
|
| 26 |
<value>$MaximumElevation</value> |
|
| 27 |
</_replace> |
|
| 28 |
</value> |
|
| 29 |
</_units> |
|
| 30 |
</max> |
|
| 31 |
<min> |
|
| 32 |
<_units> |
|
| 33 |
<default>m</default> |
|
| 34 |
<to>m</to> |
|
| 35 |
<to></to> |
|
| 36 |
<value> |
|
| 37 |
<_rangeStart> |
|
| 38 |
<value> |
|
| 39 |
<_replace> |
|
| 40 |
<\bca\.?></\bca\.?> |
|
| 41 |
<value> |
|
| 42 |
<_nullIf> |
|
| 43 |
<null>.</null> |
|
| 44 |
<value>$MinimumElevation</value> |
|
| 45 |
</_nullIf> |
|
| 46 |
</value> |
|
| 47 |
</_replace> |
|
| 48 |
</value> |
|
| 49 |
</_rangeStart> |
|
| 50 |
</value> |
|
| 51 |
</_units> |
|
| 52 |
</min> |
|
| 53 |
</_avg> |
|
| 54 |
</elevation> |
|
| 55 |
<elevationrange> |
|
| 56 |
<_range> |
|
| 57 |
<from> |
|
| 58 |
<_units> |
|
| 59 |
<default>m</default> |
|
| 60 |
<to>m</to> |
|
| 61 |
<to></to> |
|
| 62 |
<value> |
|
| 63 |
<_rangeStart> |
|
| 64 |
<value> |
|
| 65 |
<_replace> |
|
| 66 |
<\bca\.?></\bca\.?> |
|
| 67 |
<value> |
|
| 68 |
<_nullIf> |
|
| 69 |
<null>.</null> |
|
| 70 |
<value>$MinimumElevation</value> |
|
| 71 |
</_nullIf> |
|
| 72 |
</value> |
|
| 73 |
</_replace> |
|
| 74 |
</value> |
|
| 75 |
</_rangeStart> |
|
| 76 |
</value> |
|
| 77 |
</_units> |
|
| 78 |
</from> |
|
| 79 |
<to> |
|
| 80 |
<_units> |
|
| 81 |
<default>m</default> |
|
| 82 |
<to>m</to> |
|
| 83 |
<to></to> |
|
| 84 |
<value> |
|
| 85 |
<_alt> |
|
| 86 |
<1> |
|
| 87 |
<_replace> |
|
| 88 |
<\bca\.?></\bca\.?> |
|
| 89 |
<value>$MaximumElevation</value> |
|
| 90 |
</_replace> |
|
| 91 |
</1> |
|
| 92 |
<2> |
|
| 93 |
<_rangeEnd> |
|
| 94 |
<value> |
|
| 95 |
<_replace> |
|
| 96 |
<\bca\.?></\bca\.?> |
|
| 97 |
<value> |
|
| 98 |
<_nullIf> |
|
| 99 |
<null>.</null> |
|
| 100 |
<value>$MinimumElevation</value> |
|
| 101 |
</_nullIf> |
|
| 102 |
</value> |
|
| 103 |
</_replace> |
|
| 104 |
</value> |
|
| 105 |
</_rangeEnd> |
|
| 106 |
</2> |
|
| 107 |
</_alt> |
|
| 108 |
</value> |
|
| 109 |
</_units> |
|
| 110 |
</to> |
|
| 111 |
</_range> |
|
| 112 |
</elevationrange> |
|
| 113 |
<locationdetermination> |
|
| 114 |
<coordsaccuracy><_noCV><value>$CoordinatePrecision</value></_noCV></coordsaccuracy> |
|
| 115 |
<footprintgeometry_dwc>$BoundingBox</footprintgeometry_dwc> |
|
| 116 |
<latitude> |
|
| 117 |
<_nullIf> |
|
| 118 |
<null>0</null> |
|
| 119 |
<type>float</type> |
|
| 120 |
<value>$Latitude</value> |
|
| 121 |
</_nullIf> |
|
| 122 |
</latitude> |
|
| 123 |
<longitude> |
|
| 124 |
<_nullIf> |
|
| 125 |
<null>0</null> |
|
| 126 |
<type>float</type> |
|
| 127 |
<value>$Longitude</value> |
|
| 128 |
</_nullIf> |
|
| 129 |
</longitude> |
|
| 130 |
<namedplace_id> |
|
| 131 |
<_simplifyPath> |
|
| 132 |
<next>parent_id/namedplace</next> |
|
| 133 |
<require>placename</require> |
|
| 134 |
<path> |
|
| 135 |
<namedplace> |
|
| 136 |
<rank>county</rank> |
|
| 137 |
<placename>$County</placename> |
|
| 138 |
<parent_id> |
|
| 139 |
<namedplace> |
|
| 140 |
<rank>stateProvince</rank> |
|
| 141 |
<placename>$StateProvince</placename> |
|
| 142 |
<parent_id> |
|
| 143 |
<namedplace> |
|
| 144 |
<rank>country</rank> |
|
| 145 |
<placename>$Country</placename> |
|
| 146 |
<parent_id> |
|
| 147 |
<namedplace> |
|
| 148 |
<rank>continent</rank> |
|
| 149 |
<placename>$ContinentOcean</placename> |
|
| 150 |
</namedplace> |
|
| 151 |
</parent_id> |
|
| 152 |
</namedplace> |
|
| 153 |
</parent_id> |
|
| 154 |
</namedplace> |
|
| 155 |
</parent_id> |
|
| 156 |
</namedplace> |
|
| 157 |
</path> |
|
| 158 |
</_simplifyPath> |
|
| 159 |
</namedplace_id> |
|
| 160 |
</locationdetermination> |
|
| 161 |
<locationevent> |
|
| 162 |
<obsenddate> |
|
| 163 |
<_date> |
|
| 164 |
<date> |
|
| 165 |
<_dateRangeEnd> |
|
| 166 |
<value> |
|
| 167 |
<_date> |
|
| 168 |
<day> |
|
| 169 |
<_nullIf> |
|
| 170 |
<null>0</null> |
|
| 171 |
<type>float</type> |
|
| 172 |
<value>$DayCollected</value> |
|
| 173 |
</_nullIf> |
|
| 174 |
</day> |
|
| 175 |
<month> |
|
| 176 |
<_nullIf> |
|
| 177 |
<null>0</null> |
|
| 178 |
<type>float</type> |
|
| 179 |
<value>$MonthCollected</value> |
|
| 180 |
</_nullIf> |
|
| 181 |
</month> |
|
| 182 |
<year> |
|
| 183 |
<_nullIf> |
|
| 184 |
<null>0</null> |
|
| 185 |
<type>float</type> |
|
| 186 |
<value>$YearCollected</value> |
|
| 187 |
</_nullIf> |
|
| 188 |
</year> |
|
| 189 |
</_date> |
|
| 190 |
</value> |
|
| 191 |
</_dateRangeEnd> |
|
| 192 |
</date> |
|
| 193 |
</_date> |
|
| 194 |
</obsenddate> |
|
| 195 |
<obsstartdate> |
|
| 196 |
<_date> |
|
| 197 |
<date> |
|
| 198 |
<_dateRangeStart> |
|
| 199 |
<value> |
|
| 200 |
<_date> |
|
| 201 |
<day> |
|
| 202 |
<_nullIf> |
|
| 203 |
<null>0</null> |
|
| 204 |
<type>float</type> |
|
| 205 |
<value>$DayCollected</value> |
|
| 206 |
</_nullIf> |
|
| 207 |
</day> |
|
| 208 |
<month> |
|
| 209 |
<_nullIf> |
|
| 210 |
<null>0</null> |
|
| 211 |
<type>float</type> |
|
| 212 |
<value>$MonthCollected</value> |
|
| 213 |
</_nullIf> |
|
| 214 |
</month> |
|
| 215 |
<year> |
|
| 216 |
<_nullIf> |
|
| 217 |
<null>0</null> |
|
| 218 |
<type>float</type> |
|
| 219 |
<value>$YearCollected</value> |
|
| 220 |
</_nullIf> |
|
| 221 |
</year> |
|
| 222 |
</_date> |
|
| 223 |
</value> |
|
| 224 |
</_dateRangeStart> |
|
| 225 |
</date> |
|
| 226 |
</_date> |
|
| 227 |
</obsstartdate> |
|
| 228 |
<taxonoccurrence> |
|
| 229 |
<aggregateoccurrence> |
|
| 230 |
<collectiondate> |
|
| 231 |
<_date> |
|
| 232 |
<date> |
|
| 233 |
<_date> |
|
| 234 |
<day> |
|
| 235 |
<_nullIf> |
|
| 236 |
<null>0</null> |
|
| 237 |
<type>float</type> |
|
| 238 |
<value>$DayCollected</value> |
|
| 239 |
</_nullIf> |
|
| 240 |
</day> |
|
| 241 |
<month> |
|
| 242 |
<_nullIf> |
|
| 243 |
<null>0</null> |
|
| 244 |
<type>float</type> |
|
| 245 |
<value>$MonthCollected</value> |
|
| 246 |
</_nullIf> |
|
| 247 |
</month> |
|
| 248 |
<year> |
|
| 249 |
<_nullIf> |
|
| 250 |
<null>0</null> |
|
| 251 |
<type>float</type> |
|
| 252 |
<value>$YearCollected</value> |
|
| 253 |
</_nullIf> |
|
| 254 |
</year> |
|
| 255 |
</_date> |
|
| 256 |
</date> |
|
| 257 |
</_date> |
|
| 258 |
</collectiondate> |
|
| 259 |
<count>$IndividualCount</count> |
|
| 260 |
<notes> |
|
| 261 |
<_merge> |
|
| 262 |
<1>$Notes</1> |
|
| 263 |
<2> |
|
| 264 |
<_label> |
|
| 265 |
<label>plant fungus</label> |
|
| 266 |
<value>$PlantFungusDescription</value> |
|
| 267 |
</_label> |
|
| 268 |
</2> |
|
| 269 |
</_merge> |
|
| 270 |
</notes> |
|
| 271 |
<plantobservation> |
|
| 272 |
<collectionnumber> |
|
| 273 |
<_alt> |
|
| 274 |
<1>$CollectorNumber</1> |
|
| 275 |
<2>$FieldNumber</2> |
|
| 276 |
</_alt> |
|
| 277 |
</collectionnumber> |
|
| 278 |
<definedvalue fkey="tablerecord_id"> |
|
| 279 |
<userdefined_id> |
|
| 280 |
<userdefined> |
|
| 281 |
<tablename>plantobservation</tablename> |
|
| 282 |
<userdefinedname>sex</userdefinedname> |
|
| 283 |
</userdefined> |
|
| 284 |
</userdefined_id> |
|
| 285 |
<definedvalue>$Sex</definedvalue> |
|
| 286 |
</definedvalue> |
|
| 287 |
<specimenreplicate> |
|
| 288 |
<catalognumber_dwc>$CatalogNumber</catalognumber_dwc> |
|
| 289 |
<collectioncode_dwc>$CollectionCode</collectioncode_dwc> |
|
| 290 |
<institution_id><party><organizationname>$InstitutionCode</organizationname></party></institution_id> |
|
| 291 |
<sourceaccessioncode>$UniqueNYInternalRecordNumber</sourceaccessioncode> |
|
| 292 |
</specimenreplicate> |
|
| 293 |
</plantobservation> |
|
| 294 |
</aggregateoccurrence> |
|
| 295 |
<authortaxoncode> |
|
| 296 |
<_alt> |
|
| 297 |
<1> |
|
| 298 |
<_alt> |
|
| 299 |
<1>$CollectorNumber</1> |
|
| 300 |
<2>$FieldNumber</2> |
|
| 301 |
</_alt> |
|
| 302 |
</1> |
|
| 303 |
<2>$ScientificName</2> |
|
| 304 |
</_alt> |
|
| 305 |
</authortaxoncode> |
|
| 306 |
<taxondetermination> |
|
| 307 |
<isoriginal>true</isoriginal> |
|
| 308 |
<role>identifier</role> |
|
| 309 |
<party_id> |
|
| 310 |
<party> |
|
| 311 |
<givenname><_namePart><first>$IdentifiedBy</first></_namePart></givenname> |
|
| 312 |
<middlename><_namePart><middle>$IdentifiedBy</middle></_namePart></middlename> |
|
| 313 |
<surname><_namePart><last>$IdentifiedBy</last></_namePart></surname> |
|
| 314 |
</party> |
|
| 315 |
</party_id> |
|
| 316 |
<plantconcept_id> |
|
| 317 |
<plantconcept> |
|
| 318 |
<plantname_id> |
|
| 319 |
<_simplifyPath> |
|
| 320 |
<next>parent_id/plantname</next> |
|
| 321 |
<require>plantname</require> |
|
| 322 |
<path> |
|
| 323 |
<plantname> |
|
| 324 |
<rank>binomial</rank> |
|
| 325 |
<plantname>$ScientificName</plantname> |
|
| 326 |
<parent_id> |
|
| 327 |
<plantname> |
|
| 328 |
<rank>authority</rank> |
|
| 329 |
<plantname>$ScientificNameAuthor</plantname> |
|
| 330 |
<parent_id> |
|
| 331 |
<plantname> |
|
| 332 |
<rank>subspecies</rank> |
|
| 333 |
<plantname>$Subspecies</plantname> |
|
| 334 |
<parent_id> |
|
| 335 |
<plantname> |
|
| 336 |
<rank>species</rank> |
|
| 337 |
<plantname>$Species</plantname> |
|
| 338 |
<parent_id> |
|
| 339 |
<plantname> |
|
| 340 |
<rank>genus</rank> |
|
| 341 |
<plantname>$Genus</plantname> |
|
| 342 |
<parent_id> |
|
| 343 |
<plantname> |
|
| 344 |
<rank>family</rank> |
|
| 345 |
<plantname>$Family</plantname> |
|
| 346 |
<parent_id> |
|
| 347 |
<plantname> |
|
| 348 |
<rank>order</rank> |
|
| 349 |
<plantname>$Order</plantname> |
|
| 350 |
<parent_id> |
|
| 351 |
<plantname> |
|
| 352 |
<rank>class</rank> |
|
| 353 |
<plantname>$Class</plantname> |
|
| 354 |
<parent_id> |
|
| 355 |
<plantname> |
|
| 356 |
<rank>subkingdom</rank> |
|
| 357 |
<plantname>$Phylum</plantname> |
|
| 358 |
<parent_id> |
|
| 359 |
<plantname> |
|
| 360 |
<rank>kingdom</rank> |
|
| 361 |
<plantname>$Kingdom</plantname> |
|
| 362 |
</plantname> |
|
| 363 |
</parent_id> |
|
| 364 |
</plantname> |
|
| 365 |
</parent_id> |
|
| 366 |
</plantname> |
|
| 367 |
</parent_id> |
|
| 368 |
</plantname> |
|
| 369 |
</parent_id> |
|
| 370 |
</plantname> |
|
| 371 |
</parent_id> |
|
| 372 |
</plantname> |
|
| 373 |
</parent_id> |
|
| 374 |
</plantname> |
|
| 375 |
</parent_id> |
|
| 376 |
</plantname> |
|
| 377 |
</parent_id> |
|
| 378 |
</plantname> |
|
| 379 |
</parent_id> |
|
| 380 |
</plantname> |
|
| 381 |
</path> |
|
| 382 |
</_simplifyPath> |
|
| 383 |
</plantname_id> |
|
| 384 |
</plantconcept> |
|
| 385 |
</plantconcept_id> |
|
| 386 |
<determinationdate> |
|
| 387 |
<_date> |
|
| 388 |
<date> |
|
| 389 |
<_dateRangeStart> |
|
| 390 |
<value> |
|
| 391 |
<_date> |
|
| 392 |
<day> |
|
| 393 |
<_nullIf> |
|
| 394 |
<null>0</null> |
|
| 395 |
<type>float</type> |
|
| 396 |
<value>$DayIdentified</value> |
|
| 397 |
</_nullIf> |
|
| 398 |
</day> |
|
| 399 |
<month> |
|
| 400 |
<_nullIf> |
|
| 401 |
<null>0</null> |
|
| 402 |
<type>float</type> |
|
| 403 |
<value>$MonthIdentified</value> |
|
| 404 |
</_nullIf> |
|
| 405 |
</month> |
|
| 406 |
<year> |
|
| 407 |
<_nullIf> |
|
| 408 |
<null>0</null> |
|
| 409 |
<type>float</type> |
|
| 410 |
<value>$YearIdentified</value> |
|
| 411 |
</_nullIf> |
|
| 412 |
</year> |
|
| 413 |
</_date> |
|
| 414 |
</value> |
|
| 415 |
</_dateRangeStart> |
|
| 416 |
</date> |
|
| 417 |
</_date> |
|
| 418 |
</determinationdate> |
|
| 419 |
</taxondetermination> |
|
| 420 |
<verbatimcollectorname>$Collector</verbatimcollectorname> |
|
| 421 |
<voucher><specimenreplicate_id><specimenreplicate><catalognumber_dwc/></specimenreplicate></specimenreplicate_id></voucher> |
|
| 422 |
</taxonoccurrence> |
|
| 423 |
<waterdepth> |
|
| 424 |
<_avg> |
|
| 425 |
<max> |
|
| 426 |
<_units> |
|
| 427 |
<default>m</default> |
|
| 428 |
<to>m</to> |
|
| 429 |
<to></to> |
|
| 430 |
<value> |
|
| 431 |
<_replace> |
|
| 432 |
<\bca\.?></\bca\.?> |
|
| 433 |
<value>$MaximumDepth</value> |
|
| 434 |
</_replace> |
|
| 435 |
</value> |
|
| 436 |
</_units> |
|
| 437 |
</max> |
|
| 438 |
<min> |
|
| 439 |
<_units> |
|
| 440 |
<default>m</default> |
|
| 441 |
<to>m</to> |
|
| 442 |
<to></to> |
|
| 443 |
<value> |
|
| 444 |
<_replace> |
|
| 445 |
<\bca\.?></\bca\.?> |
|
| 446 |
<value>$MinimumDepth</value> |
|
| 447 |
</_replace> |
|
| 448 |
</value> |
|
| 449 |
</_units> |
|
| 450 |
</min> |
|
| 451 |
</_avg> |
|
| 452 |
</waterdepth> |
|
| 453 |
</locationevent> |
|
| 454 |
<locationnarrative> |
|
| 455 |
<_merge> |
|
| 456 |
<1> |
|
| 457 |
<_merge> |
|
| 458 |
<1>$Locality</1> |
|
| 459 |
<2> |
|
| 460 |
<_label> |
|
| 461 |
<label>substrate</label> |
|
| 462 |
<value>$Substrate</value> |
|
| 463 |
</_label> |
|
| 464 |
</2> |
|
| 465 |
<3> |
|
| 466 |
<_label> |
|
| 467 |
<label>vegetation</label> |
|
| 468 |
<value>$Vegetation</value> |
|
| 469 |
</_label> |
|
| 470 |
</3> |
|
| 471 |
</_merge> |
|
| 472 |
</1> |
|
| 473 |
<3> |
|
| 474 |
<_label> |
|
| 475 |
<label>habitat</label> |
|
| 476 |
<value>$Habitat</value> |
|
| 477 |
</_label> |
|
| 478 |
</3> |
|
| 479 |
</_merge> |
|
| 480 |
</locationnarrative> |
|
| 481 |
</location> |
|
| 482 |
</VegBIEN> |
|
| 483 |
Inserted 39 new rows into database |
|
| inputs/NY/src/specimens/VegBIEN.csv | ||
|---|---|---|
| 1 |
NY[Veg+],VegBIEN:,Comments |
|
| 2 |
UniqueNYInternalRecordNumber,/location/authorlocationcode/_alt/3, |
|
| 3 |
InstitutionCode,/location/authorlocationcode/_alt/4/_merge/1, |
|
| 4 |
CollectionCode,/location/authorlocationcode/_alt/4/_merge/2/_merge/1, |
|
| 5 |
CatalogNumber,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/else", |
|
| 6 |
MaximumElevation,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
|
| 7 |
MinimumElevation,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value/_nullIf:[null=.]/value", |
|
| 8 |
MinimumElevation,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value/_nullIf:[null=.]/value", |
|
| 9 |
MaximumElevation,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1/_replace:[""\bca\.?""=]/value", |
|
| 10 |
MinimumElevation,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value/_nullIf:[null=.]/value", |
|
| 11 |
CoordinatePrecision,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2, |
|
| 12 |
BoundingBox,/location/locationdetermination/footprintgeometry_dwc, |
|
| 13 |
Latitude,"/location/locationdetermination/latitude/_alt/2/_nullIf:[null=0,type=float]/value", |
|
| 14 |
Longitude,"/location/locationdetermination/longitude/_alt/2/_nullIf:[null=0,type=float]/value", |
|
| 15 |
County,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename", |
|
| 16 |
StateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename", |
|
| 17 |
Country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename", |
|
| 18 |
ContinentOcean,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename", |
|
| 19 |
DayCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 20 |
MonthCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 21 |
YearCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 22 |
DayCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 23 |
MonthCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 24 |
YearCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 25 |
DayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 26 |
MonthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 27 |
YearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 28 |
IndividualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
|
| 29 |
Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_merge/1, |
|
| 30 |
PlantFungusDescription,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_merge/2/_label[label=""plant fungus""]/value", |
|
| 31 |
CollectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/1, |
|
| 32 |
FieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/2,Usage inconsistent with DwC definition |
|
| 33 |
Sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
|
| 34 |
CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
|
| 35 |
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
|
| 36 |
InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
|
| 37 |
UniqueNYInternalRecordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
|
| 38 |
CollectorNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/1, |
|
| 39 |
FieldNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/2,Usage inconsistent with DwC definition |
|
| 40 |
ScientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2, |
|
| 41 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first, |
|
| 42 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle, |
|
| 43 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last, |
|
| 44 |
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname", |
|
| 45 |
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname/_alt/2", |
|
| 46 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname", |
|
| 47 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname", |
|
| 48 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname", |
|
| 49 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname", |
|
| 50 |
Order,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname", |
|
| 51 |
Class,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname", |
|
| 52 |
Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname", |
|
| 53 |
Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname", |
|
| 54 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 55 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 56 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 57 |
Collector,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
|
| 58 |
CatalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
|
| 59 |
MaximumDepth,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
|
| 60 |
MinimumDepth,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
|
| 61 |
Locality,/location/locationnarrative/_merge/1/_merge/1, |
|
| 62 |
Substrate,"/location/locationnarrative/_merge/1/_merge/2/_label[label=""substrate""]/value", |
|
| 63 |
Vegetation,"/location/locationnarrative/_merge/1/_merge/3/_label[label=""vegetation""]/value", |
|
Also available in: Unified diff
inputs: Move src subdir into main dir, using the steps at <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/VegCSV_subfolders#Move-src-subdir-into-main-dir>