Project

General

Profile

1 3761 aaronmk
selfDir_uZPPqC := $(dir $(lastword $(MAKEFILE_LIST)))
2
root := $(selfDir_uZPPqC)..
3
include $(root)/lib/common.Makefile
4
5
6 783 aaronmk
##### Configuration
7
8 1921 aaronmk
# Command line
9 1190 aaronmk
log ?= $(if $(test),,1)
10 1257 aaronmk
profile ?=
11 1983 aaronmk
quiet ?=
12 1620 aaronmk
reverify ?= 1
13 1990 aaronmk
use_staged ?= $(by_col)
14 1921 aaronmk
15
# Makefile
16 1386 aaronmk
exts ?= csv tsv txt xml
17 783 aaronmk
test_n ?= 2
18
19
##### Vars/functions
20
21 1821 aaronmk
# Paths
22
datasrc := $(notdir $(realpath .))
23
bin := $(root)/bin
24
mappings := $(root)/mappings
25
26 368 aaronmk
# Make
27 640 aaronmk
SHELL := /bin/bash
28 1509 aaronmk
selfMake = $(MAKE) --makefile=../input.Makefile
29 1821 aaronmk
subMake = $(MAKE) $(@:$(root)/%=%) --directory=$(root)
30 404 aaronmk
+_ = $(+:_%=)
31 368 aaronmk
addBeforeExt = $(basename $(2))$(1)$(suffix $(2))
32
33 1742 aaronmk
# OS
34
os := $(shell uname)
35
forOs = $(patsubst %,%-$(filter Linux Darwin,$(os)),$(1))
36
37
# Formatting
38
SED = sed -$(if $(filter Darwin,$(os)),E,r)
39
40 790 aaronmk
# System
41
date = $(shell date +"%Y-%m-%d-%H-%M-%S")
42
43 640 aaronmk
# Terminal
44 1184 aaronmk
termCols := $(shell tput cols)
45 640 aaronmk
esc := '['
46
reset := $(esc)'0m'
47
emph := $(esc)'7m '
48
endEmph := ' '$(reset)
49
50 368 aaronmk
# Commands
51 1245 aaronmk
MKDIR = mkdir -p
52
mkdir = $(MKDIR) $(@D)
53 395 aaronmk
CP = cp -p
54 1184 aaronmk
diff = diff --unified=2
55 3721 aaronmk
diffIgnoreSpace = $(diff) --ignore-space-change
56 1184 aaronmk
diffVerbose = $(if $(verbose),diff --side-by-side --left-column\
57
--width=$(termCols),$(diff))
58 368 aaronmk
59 1918 aaronmk
# BIEN commands
60 4137 aaronmk
sortFilenames = $(shell $(bin)/sort_filenames $(1))
61 1524 aaronmk
selfMap = $(bin)/cols 0 0
62 1081 aaronmk
psqlOpts := --set ON_ERROR_STOP=1 --quiet
63 1289 aaronmk
psqlAsBien := $(bin)/psql_vegbien $(psqlOpts)
64 353 aaronmk
65 1594 aaronmk
# SVN
66
addDir = $(if $(wildcard $(1)/),svn add --depth=empty $(1),svn mkdir $(1))
67 1771 aaronmk
setSvnIgnore = svn propset svn:ignore $(2) $(1)
68 1594 aaronmk
define addDirWithIgnore
69
$(addDir)
70 1771 aaronmk
$(setSvnIgnore)
71 1594 aaronmk
endef
72
73 783 aaronmk
##### General targets
74 250 aaronmk
75 418 aaronmk
all: _always maps ;
76 247 aaronmk
77 383 aaronmk
clean: _always
78 256 aaronmk
	$(RM) $(all)
79
80 1742 aaronmk
remake: _always clean
81
	+$(selfMake)
82
# re-run make so that cache of existing files is reset
83
84 1627 aaronmk
make_script = ./$< >$@
85 368 aaronmk
86 1604 aaronmk
%/: % _always ;
87
88 1627 aaronmk
# Must come before `%: %.make` to override it
89 4182 aaronmk
%: %.make _always
90 3317 aaronmk
	(set -x; $(make_script)) 2>>$<.log.sql
91 4182 aaronmk
.PRECIOUS: % # save partial outputs of aborted src make scripts
92 1627 aaronmk
93
%: %.make _always
94
	$(make_script)
95
96 783 aaronmk
##### SVN
97 250 aaronmk
98 4221 aaronmk
add: _always
99 4182 aaronmk
	$(call setSvnIgnore,.,'*')
100 4124 aaronmk
	$(call addDirWithIgnore,verify,'*.out')
101 4223 aaronmk
	$(call addFile,import_order.txt)
102 766 aaronmk
103 4217 aaronmk
# Adds a new table subdir
104
%/add: _always
105
	$(call addDirWithIgnore,$*,'*')
106
	$(call addDirWithIgnore,$*/logs,$$'*.log.sql\n*.trace')
107
108 1969 aaronmk
##### Existing maps discovery
109 1955 aaronmk
110 4182 aaronmk
sortFile := import_order.txt
111 4181 aaronmk
112
ifneq ($(wildcard $(sortFile)),)
113
tables := $(shell cat $(sortFile))# $(shell) replaces "\n" with " "
114
else
115 4182 aaronmk
allSubdirs := $(call wildcard/,*/)
116
tables := $(call sortFilenames,$(filter-out _% src verify,$(allSubdirs:%/=%)))
117 4181 aaronmk
endif
118 4137 aaronmk
119 4182 aaronmk
srcMaps := $(wildcard */src.csv)
120 1955 aaronmk
121 4182 aaronmk
srcMap := %/src.csv
122
viaMap := %/map.csv
123
fullViaMap := %/map.full.csv
124
directMap := %/VegBIEN.csv
125 4118 aaronmk
anyMap := $(srcMap) $(viaMap) $(fullViaMap) $(directMap)
126 3574 aaronmk
127 4214 aaronmk
extsFilter := $(addprefix %.,$(exts))
128
dataOnly = $(filter $(extsFilter),$(1))
129
130 4182 aaronmk
anyTest = $*/test.%
131 4214 aaronmk
srcsOnly = $(filter-out $(anyMap) $(anyTest) %/logs,$(call dataOnly,$(1)))
132 4120 aaronmk
133 4095 aaronmk
via := Veg+
134 783 aaronmk
135 4098 aaronmk
coreMap := $(mappings)/$(via)-VegBIEN.csv
136
coreSelfMap := $(mappings)/$(via).self.csv
137 783 aaronmk
138 4182 aaronmk
viaMaps := $(wildcard $(tables:%=%/map.csv))
139
viaMaps += $(filter-out $(viaMaps),$(srcMaps:%/src.csv=%/map.csv))
140
viaMaps += $(filter-out $(viaMaps) $(fullViaMap),$(wildcard */map.csv))
141 783 aaronmk
142 4117 aaronmk
autogenMaps := $(subst map.,VegBIEN.,$(viaMaps))
143 728 aaronmk
directMaps := $(autogenMaps) $(filter-out $(autogenMaps),\
144 4182 aaronmk
$(wildcard */VegBIEN.csv))
145 728 aaronmk
146 1969 aaronmk
##### Sources
147
148 4182 aaronmk
srcs = $(call sortFilenames,$(call srcsOnly,$(wildcard $*/*)))
149 1969 aaronmk
isCsv = $(if $(srcs),$(if $(filter %.xml,$(srcs)),,1))
150
    # true if $(srcs) non-empty and contains no *.xml
151
catSrcs = $(bin)/cat$(if $(isCsv),_csv) $(srcs)
152
withCatSrcs = $(catSrcs:$(bin)/%=$(bin)/with_%) --
153
154 1986 aaronmk
# Usage: `make {--silent|-s} inputs/<datasrc>/cat` (don't echo make commands)
155 1969 aaronmk
cat: $(addprefix cat-,$(tables)) _always ;
156
157
cat-%: _always
158
	$(catSrcs)
159
160 4121 aaronmk
##### Staging tables installation
161 1921 aaronmk
162 4121 aaronmk
install: _always schema $(addprefix install-,$(tables)) ;
163 1921 aaronmk
164 4121 aaronmk
uninstall: _always rm_schema ;
165
# rm_schema will also drop all staging tables
166 1921 aaronmk
167
reinstall: _always uninstall install ;
168
169 4121 aaronmk
schema: _always
170 1921 aaronmk
	-echo 'CREATE SCHEMA "$(datasrc)";'|$(psqlAsBien)
171
# ignore errors if schema exists
172
173 4121 aaronmk
rm_schema: _always
174 1921 aaronmk
	echo 'DROP SCHEMA IF EXISTS "$(datasrc)" CASCADE;'|$(psqlAsBien)
175
176 4121 aaronmk
install-%: _always
177 1955 aaronmk
	$(if $(isCsv),$(import_install_))
178 3476 aaronmk
import_install_ = (prefix=; . $(bin)/vegbien_dest; "time" nice -n +5\
179
env schema=$(datasrc) table=$* $(bin)/csv2db $(catSrcs)\
180 4182 aaronmk
$(if $(log),$(if $(quiet),&>,2>&1|tee )$*/logs/install.log.sql))
181 1921 aaronmk
182 1777 aaronmk
##### Maps building
183
184 1789 aaronmk
# Maps to (try to) build are added to one of these
185 1779 aaronmk
maps :=
186 1789 aaronmk
createOnlyMaps :=
187 1779 aaronmk
188 4208 aaronmk
srcRoot = $(mappings)/root.sh
189 3569 aaronmk
mkSrcMap = $(catSrcs)|(. $(srcRoot); env datasrc=$(datasrc) $(bin)/src_map >$@)
190 1779 aaronmk
191 3567 aaronmk
# Src maps cleanup
192 4182 aaronmk
ifneq ($(filter %/.src.csv.last_cleanup,$(MAKECMDGOALS)),)
193
%/.src.csv.last_cleanup: %/src.csv
194 3814 aaronmk
	$(bin)/in_place $< $(bin)/cols +
195 3567 aaronmk
	touch $@
196
else
197 1779 aaronmk
# Autogen src maps with known table names
198 4182 aaronmk
%/src.csv: _always
199 3567 aaronmk
	$(if $(wildcard $@),,$(if $(isCsv),$(mkSrcMap)))
200 4182 aaronmk
	+$(if $(isCsv),$(selfMake) $(@:%/src.csv=%/.src.csv.last_cleanup))
201 3567 aaronmk
# only build if doesn't exist
202 1779 aaronmk
# only build if CSV srcs exist for that table name
203 3567 aaronmk
endif
204
205 4182 aaronmk
createOnlyMaps += $(tables:%=%/src.csv)
206 1779 aaronmk
207 1273 aaronmk
# Must come before $(root)/% to override it
208 1524 aaronmk
$(coreSelfMap): _always
209 1273 aaronmk
	-+$(subMake)
210 1524 aaronmk
# ignore errors if $(coreSelfMap) does not exist
211 1273 aaronmk
212 3572 aaronmk
# Via maps cleanup
213 4182 aaronmk
ifneq ($(filter %/.map.csv.last_cleanup,$(MAKECMDGOALS)),)
214
%/.map.csv.last_cleanup: %/map.csv $(coreMap)
215 3572 aaronmk
	$(bin)/in_place $< env ignore=1 $(bin)/subtract $(word 2,$+) 0 1 2
216
	touch $@
217
# Include comment column so commented mappings are never removed
218
else
219 4182 aaronmk
%/map.csv: %/src.csv _always
220 3574 aaronmk
	$(if $(wildcard $@),,$(if $(wildcard $<),$(CP) $< $@))
221 4182 aaronmk
	+$(selfMake) $(@:%/map.csv=%/.map.csv.last_cleanup)
222 3572 aaronmk
endif
223
224 4182 aaronmk
srcMap* = $*/src.csv
225 4135 aaronmk
joinSrcMap = $(if $(hasSrc),$(bin)/in_place $@ $(bin)/intersect $(srcMap*) 0)
226 4133 aaronmk
hasSrc = $(shell test -s $(word 3,$+) && echo t)
227
228
makeFullCsv = env ignore=1 $(bin)/union <$(wordlist 1,2,$+)|$(bin)/sort_map >$@
229
230 4182 aaronmk
%/map.full.csv: %/map.csv $(coreSelfMap)
231 4133 aaronmk
	$(makeFullCsv)
232
	$(joinSrcMap)
233 4182 aaronmk
maps += $(patsubst %/map.csv,%/map.full.csv,$(viaMaps))
234 4133 aaronmk
235 4182 aaronmk
%/VegBIEN.csv: %/map.full.csv $(coreMap)
236 1530 aaronmk
	$(bin)/join <$+|$(bin)/sort_map >$@
237
maps += $(autogenMaps)
238
239 1789 aaronmk
maps: $(createOnlyMaps) $(maps) _always ;
240 1139 aaronmk
241
all += $(maps)
242
243 1742 aaronmk
##### Maps validation
244
245 3764 aaronmk
missingMappingsCmd = +$(selfMake) remake 2>&1\
246 3821 aaronmk
|$(SED) -n 's/^.*No $(*2Space) mapping for (.*)$$/\1/p'|$(SED) 's/\/_.*//'\
247 3764 aaronmk
$(if $(filter non-empty_join,$*),|$(bin)/ucase_first 0)|sort|uniq
248 1742 aaronmk
249 3764 aaronmk
include $(root)/lib/mappings.Makefile
250 1742 aaronmk
251 1509 aaronmk
##### External dependencies
252
253
$(root)/%: _always
254
	+$(subMake)
255 1628 aaronmk
.PRECIOUS: $(root)/% # let ext. dir's Makefile decide whether to delete on error
256 1509 aaronmk
257 783 aaronmk
##### Mapping
258 368 aaronmk
259 4182 aaronmk
+maps = $(filter %/map.csv %/VegBIEN.csv $(mappings)/%,$(+_))
260 4106 aaronmk
map = $(if $(srcs),$(withCatSrcs) $(root)/map $(+maps),\
261 4182 aaronmk
$(shell echo Warning: No input file $*/*.{$(exts)} >&2)false)
262 4106 aaronmk
# need false to run some command, when prefixed by `env ...` below
263 3387 aaronmk
map2db = $(if $(use_staged),env in_database=vegbien in_schema=$(datasrc)\
264
in_table=$*) env out_database=vegbien $(map)
265 368 aaronmk
266 783 aaronmk
##### Import to VegBIEN
267 772 aaronmk
268 1853 aaronmk
profileTest = $(if $(profile),$(if $(test),1))
269
profileOnly = -env profile_to=/dev/fd/3 $(map2db) 3>&1 1>&2|\
270
$(bin)/profile_stats /dev/fd/0
271
272 4182 aaronmk
log_ = $*/logs/$(if $(n),n=$(n).,)$(date).log.sql
273 3317 aaronmk
trace = $(log_:.log.sql=.trace)
274 1853 aaronmk
import = -$(if $(profileTest),$(profileOnly),(set -x; "time" env commit=1\
275 1190 aaronmk
$(if $(profile),profile_to=$(trace)) $(map2db)) $(if $(log),\
276 3616 aaronmk
$(if $(n),,&>$(log_)))$(if $(log),$(if $(n), 2>&1|tee -a $(log_))))
277 1088 aaronmk
# don't abort on import errors, which often relate to invalid input data
278 624 aaronmk
279 1193 aaronmk
import: $(addprefix import-,$(tables)) _always ;
280 718 aaronmk
281 4182 aaronmk
import-%: %/VegBIEN.csv _always
282 718 aaronmk
	$(import)
283 772 aaronmk
# default:
284
import-%: _always ;
285 718 aaronmk
286 790 aaronmk
##### Log files from import
287
288 4182 aaronmk
logs := $(wildcard */logs/*.log.sql */logs/*.trace)
289 339 aaronmk
290 383 aaronmk
rm_logs: _always
291 339 aaronmk
	$(RM) $(logs)
292
293 783 aaronmk
##### Verification of import
294 264 aaronmk
295 1194 aaronmk
verify: $(addprefix verify-,$(tables)) _always ;
296
297 1199 aaronmk
verify-%: verify/%.ref verify/%.out _always
298 1184 aaronmk
	-$(diffVerbose) $(+_)
299 1088 aaronmk
# don't abort on verification errors, which are expected during development
300 1194 aaronmk
# default:
301 1199 aaronmk
verify-%: verify/%.out _always
302 1200 aaronmk
	$(if $(shell test -e $< && echo t),cat $<)
303 1199 aaronmk
# don't run if verify/%.out's default do-nothing action was used
304 1200 aaronmk
# can't use $(wildcard) because it won't recheck file after verify/%.out is run
305 368 aaronmk
306 1620 aaronmk
verify = $(if $(reverify),"time" $(psqlAsBien) --set=datasource="'$(datasrc)'"\
307
--no-align --field-separator=$$'\t' --pset=footer=off --pset=null=NULL <$< >$@)
308 514 aaronmk
309 1199 aaronmk
verify/%.out: $(mappings)/verify.%.sql _always
310 1192 aaronmk
	$(verify)
311 1194 aaronmk
# default:
312 1199 aaronmk
verify/%.out: _always ;
313 369 aaronmk
314 1199 aaronmk
all += $(wildcard verify/*.out)
315 1192 aaronmk
316 1667 aaronmk
##### Editing import
317
318 4121 aaronmk
rotate: _always
319 1668 aaronmk
	echo "UPDATE party SET organizationname = organizationname||'.$(date)'\
320 1854 aaronmk
WHERE organizationname = '$(datasrc)';"|$(psqlAsBien)
321 1667 aaronmk
322 4121 aaronmk
rm: _always
323 1854 aaronmk
	echo "DELETE FROM party WHERE organizationname = '$(datasrc)';"|\
324
$(psqlAsBien)
325 1667 aaronmk
326 783 aaronmk
##### Testing
327 368 aaronmk
328 1986 aaronmk
testRefOutput = $(subst .2-step,,$(subst .staging,,$(1)))
329
testRef = $(testRefOutput).ref
330
hasOwnRef = $(filter $@,$(call testRefOutput,$@))
331
# filter returns non-empty if they are equal
332 630 aaronmk
333 897 aaronmk
define runTest
334 776 aaronmk
@echo "Testing $(abspath $@)..."
335 991 aaronmk
>$@ env test=1 n=$(test_n) $(1)
336 3721 aaronmk
@(set -x; $(diffIgnoreSpace) $(call testRef,$@) $@) 2>&1 || { e=$$?;\
337 780 aaronmk
$(if $(wildcard $(call testRef,$@)),,cat $@;)\
338 777 aaronmk
$(if $(hasOwnRef),\
339 3179 aaronmk
{\
340
read -p $(emph)'Accept new test output? (y/n)'$(endEmph) REPLY;\
341
if test "$$REPLY" = y; then\
342
(set -x; $(MAKE) $@-ok --directory=$(realpath .) --makefile=../input.Makefile);\
343
exit 0;\
344
fi;\
345
};,\
346 777 aaronmk
echo $(emph)"Note: The preceding failed test is compared to another test's\
347
output"$(endEmph);\
348
echo $(emph)"When it fails, this always indicates a bug"$(endEmph);\
349
)\
350 652 aaronmk
exit $$e;}
351 628 aaronmk
endef
352
353 1986 aaronmk
test2Db = $(call runTest,$(map2db))
354 775 aaronmk
355 876 aaronmk
tests :=
356
357 4182 aaronmk
%/test.xml: %/VegBIEN.csv _always
358 1986 aaronmk
	$(test2Db)
359 4182 aaronmk
tests += %/test.xml
360 627 aaronmk
361 1987 aaronmk
testStaged2Db = $(foreach use_staged,1,$(test2Db))
362
    # run with use_staged=1
363 1986 aaronmk
364
# Requires staging tables. To create them, run `make inputs/<datasrc>/install`.
365 4182 aaronmk
%/test.staging.xml: %/VegBIEN.csv _always
366 3642 aaronmk
	-$(if $(isCsv),$(testStaged2Db),cp -p $(@:.staging.xml=.xml) $@)
367 1988 aaronmk
# Don't abort tester if only staging test fails, in case staging table missing
368
# Non-flat-file inputs fall back to mimicking a successful test
369 4182 aaronmk
tests += %/test.staging.xml
370 1986 aaronmk
371 876 aaronmk
testOutputs := $(foreach test,$(tests),$(tables:%=$(test)))
372 724 aaronmk
373 1361 aaronmk
.PRECIOUS: $(testOutputs) # save outputs of failed tests so they can be accepted
374
375 876 aaronmk
test: _always $(testOutputs) ;
376
377 4182 aaronmk
all += $(wildcard %/test*.xml)
378 876 aaronmk
379 634 aaronmk
# Accepts a test output: make <test_output_path>-ok
380 626 aaronmk
%-ok: _always
381 630 aaronmk
	$(CP) $* $(call testRef,$*)
382 502 aaronmk
383 4120 aaronmk
accept-all: _always
384 3579 aaronmk
	+yes|$(selfMake) test
385
386 3133 aaronmk
##### Documentation
387
388 4122 aaronmk
steps = $(selfMake) -s import-$* test=1 by_col=1 verbosity=2 n=100\
389 3385 aaronmk
2>&1|$(bin)/debug2redmine >$@
390 3188 aaronmk
391 4182 aaronmk
%/logs/steps.by_col.log.sql: _always
392 3188 aaronmk
	+$(steps)