Revision 4310
Added by Aaron Marcuse-Kubitza over 12 years ago
inputs/CTFS/CTFS_conversion_bci.php | ||
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<html><body style="background-color:yellow;"> |
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<h1 style="text-align:center;"> CTFS to VegX conversion </h1> |
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<?php |
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$dbhost = 'localhost'; |
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$dbuser = 's_sramteke'; |
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$dbpass = 'S6a52mxX'; |
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echo date("m/d/y :H:i:s",time()); |
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$conn = mysql_connect($dbhost,$dbuser,$dbpass) or die ('Error'); |
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$dbname = 's_sramteke'; |
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mysql_select_db($dbname); |
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//$sql = "SELECT * FROM `DFtemp`"; |
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//$result = mysql_query($sql); |
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$xmlHandle = fopen("new_Xml_CTFS_row.xml","w"); |
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$writer = new XMLWriter(); |
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$writer->openMemory(); |
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$writer->setIndent(true); |
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$writer->setIndentString(" "); |
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$writer->startDocument('1.0', 'UTF-8'); |
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$writer->startElement('vegX'); |
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$writer->writeAttribute("xsi:noNamespaceSchemaLocation", "C:/Development/Utilities/LCR.Utilities.DataImport/LCR.Utilities.MappingTool/Resources/VEGX15~1.2/veg.xsd"); |
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$writer->writeAttribute("xmlns:acc", "eml://ecoinformatics.org/access-2.0.1"); |
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$writer->writeAttribute("xmlns:cov", "eml://ecoinformatics.org/coverage-2.0.1"); |
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$writer->writeAttribute("xmlns:doc", "eml://ecoinformatics.org/documentation-2.0.1"); |
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$writer->writeAttribute("xmlns:lit", "eml://ecoinformatics.org/literature-2.0.1"); |
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$writer->writeAttribute("xmlns:party","eml://ecoinformatics.org/party-2.0.1"); |
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$writer->writeAttribute("xmlns:proj","eml://ecoinformatics.org/project-2.0.1"); |
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$writer->writeAttribute("xmlns:res","eml://ecoinformatics.org/resource-2.0.1"); |
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$writer->writeAttribute("xmlns:txt","eml://ecoinformatics.org/text-2.0.1"); |
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$writer->writeAttribute("xmlns:dwe","http://rs.tdwg.org/dwc/dwelement/"); |
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$writer->writeAttribute("xmlns:dwg","http://rs.tdwg.org/dwc/geospatial/"); |
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$writer->writeAttribute("xmlns:misc","http://www.bfn.de/misc-1.0.1"); |
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$writer->writeAttribute("xmlns:org","http://www.bfn.de/organismobservation-1.0.1"); |
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$writer->writeAttribute("xmlns:plot","http://www.bfn.de/plot-1.0.1"); |
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$writer->writeAttribute("xmlns:obs","http://www.bfn.de/plotobservation-1.0.1"); |
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$writer->writeAttribute("xmlns:tcs","http://www.tdwg.org/schemas/tcs/1.01"); |
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$writer->writeAttribute("xmlns:xsi","http://www.w3.org/2001/XMLSchema-instance"); |
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$filename = "new_Xml_CTFS_row.xml"; |
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$file = $writer->outputMemory(); |
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file_put_contents($filename,$file); |
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$i=0; |
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/*while($row = mysql_fetch_row($result)) |
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{ |
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$writer->startElement('projects'); |
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$writer->startElement('project'); |
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$writer->writeElement('title','Project 1'); |
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$writer->endElement(); |
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$writer->endElement(); |
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}*/ |
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$sql = "SELECT distinct `PlotID`, `Plot`, `QuadratID`, `QuadratName`, `gx`, `gy` FROM `DFtemp` WHERE plot = 'bci'"; |
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$result = mysql_query($sql); |
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$writer->startElement('plots'); |
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while($row = mysql_fetch_row($result)) |
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{ |
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$writer->startElement('plot'); |
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$writer->writeElement('plotUniqueIdentifier',$row[0]); |
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$writer->writeElement('plotName',$row[1]); |
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$writer->startElement('geospatial'); |
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$writer->writeElement('dwg:VerbatimLatitude',$row[4]); |
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$writer->writeElement('dwg:VerbatimLongitude',$row[5]); |
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$writer->endElement(); |
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$writer->endElement(); |
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$writer->startElement('plot'); |
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$writer->writeElement('plotUniqueIdentifier',$row[2]); |
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$writer->writeElement('plotName',$row[3]); |
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$writer->startElement('relatedPlot'); |
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$writer->startElement('relatedPlot'); |
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$writer->writeElement('relatedPlotID',$row[0]); |
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$writer->writeElement('plotRelationship',"Quadrant"); |
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$writer->endElement(); |
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$writer->endElement(); |
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$writer->endElement(); |
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$i++; |
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if($i == 1000) |
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{ |
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file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND); |
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$i = 0; |
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} |
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} |
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$writer->endElement(); |
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file_put_contents($filename, $writer->flush(true), FILE_APPEND); |
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$i=0; |
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$sql = "select MeasureID,CensusID,QuadratID, PlotCensusNumber, ExactDate,PLotID FROM `DFtemp` WHERE plot = 'bci'"; |
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$result = mysql_query($sql); |
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$writer->startElement('plotObservations'); |
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while($row = mysql_fetch_row($result)) |
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{ |
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$writer->startElement('plotObservation'); |
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$writer->writeAttribute("id",$row[0]); |
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$writer->writeElement('plotUniqueIdentifierID',$row[5]); |
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$writer->writeElement('obsStartDate',$row[4]); |
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$writer->startElement('simpleUserdefined'); |
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$writer->writeElement('name',"CensusID"); |
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$writer->writeElement('value',$row[1]); |
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$writer->writeElement('methodID',"CensusID"); |
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$writer->endElement(); |
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$writer->endElement(); |
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$writer->startElement('plotObservation'); |
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$writer->writeAttribute("id",$row[2]); |
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$writer->writeElement('plotUniqueIdentifierID',$row[2]); |
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$writer->writeElement('obsStartDate',$row[4]); |
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$writer->startElement('simpleUserdefined'); |
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$writer->writeElement('name',"CensusID"); |
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$writer->writeElement('value',$row[1]); |
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$writer->writeElement('methodID',"CensusID"); |
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$writer->endElement(); |
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$writer->endElement(); |
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$i++; |
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if($i == 1000) |
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{ |
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file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND); |
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$i = 0; |
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} |
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} |
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$writer->endElement(); |
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file_put_contents($filename, $writer->flush(true), FILE_APPEND); |
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$i=0; |
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$sql = " select Genus,Family,SpeciesName,GenusSpecies,SpeciesID,Mnemonic FROM `DFtemp` WHERE plot = 'bci'"; |
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$result = mysql_query($sql); |
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$writer->startElement('taxonConcepts'); |
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while($row = mysql_fetch_row($result)) |
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{ |
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$writer->startElement('taxonConcept'); |
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$writer->writeAttribute("id",$row[0]); |
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$writer->writeElement('tcs:Name',$row[0]); |
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$writer->writeAttribute("scientific","false"); |
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//$writer->endElement(); |
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$writer->writeElement('tcs:Rank',"Genus"); |
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$writer->endElement(); |
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$writer->startElement('taxonConcept'); |
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$writer->writeAttribute("id",$row[1]); |
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$writer->writeElement('tcs:Name',$row[1]); |
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$writer->writeAttribute("scientific","false"); |
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//$writer->endElement(); |
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$writer->writeElement('tcs:Rank',"Family"); |
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$writer->startElement('tcs:TaxonRelationships'); |
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$writer->startElement('tcs:TaxonRelationship'); |
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$writer->writeAttribute("type","is child taxon of"); |
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$writer->writeElement('tcs:ToTaxonConcept',$row[0]); |
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$writer->endElement(); |
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$writer->endElement(); |
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$writer->endElement(); |
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$writer->startElement('taxonConcept'); |
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$writer->writeAttribute("id",$row[2]); |
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$writer->startElement('tcs:Name'); |
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$writer->startAttribute("scientific"); |
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$writer->text("false"); |
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$writer->endAttribute(); |
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$writer->text($row[2]); |
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$writer->endElement(); |
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$writer->writeElement('tcs:Rank',"Species"); |
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$writer->startElement('tcs:TaxonRelationships'); |
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$writer->startElement('tcs:TaxonRelationship'); |
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$writer->writeAttribute("type","is child taxon of"); |
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$writer->writeElement('tcs:ToTaxonConcept',$row[0]); |
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$writer->endElement(); |
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$writer->startElement('tcs:TaxonRelationship'); |
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$writer->writeAttribute("type","is child taxon of"); |
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$writer->writeElement('tcs:ToTaxonConcept',$row[1]); |
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$writer->endElement(); |
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$writer->endElement(); |
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$writer->endElement(); |
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$i++; |
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if($i == 1000) |
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{ |
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file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND); |
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$i = 0; |
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} |
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} |
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$writer->endElement(); |
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$i=0; |
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file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND); |
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$sql = "select SpeciesID,Mnemonic FROM `DFtemp` WHERE plot = 'bci'"; |
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$result = mysql_query($sql); |
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$writer->startElement('taxonNameUsageConcepts'); |
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while($row = mysql_fetch_row($result)) |
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{ |
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$writer->startElement('taxonNameUsageConcept'); |
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$writer->writeAttribute("id",$row[0]); |
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$writer->writeElement('authorName'); |
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$writer->writeElement('authorCode',$row[1]); |
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$writer->endElement(); |
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$i++; |
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if($i == 1000) |
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{ |
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file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND); |
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$i = 0; |
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} |
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} |
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$writer->endElement(); |
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$i=0; |
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file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND); |
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$sql = "select MeasureID,PlotID,x,y,TreeID,Tag,StemId,StemTag,DBH,HOM,ListOfTSM,status FROM `DFtemp` WHERE plot = 'bci'"; |
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$result = mysql_query($sql); |
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$writer->startElement('individualOrganismObservations'); |
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while($row = mysql_fetch_row($result)) |
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{ |
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$writer->startElement('individualOrganismObservation'); |
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$writer->writeAttribute("id",$row[0]); |
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$writer->writeElement('plotObservationID',$row[0]); |
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$writer->writeElement('individualOrganismID',$row[4]); |
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$writer->startElement('diameterBaseDistance'); |
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$writer->startElement('diameter'); |
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$writer->writeElement('value',$row[8]); |
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$writer->writeElement('attributeID',"DBH"); |
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$writer->endElement(); |
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$writer->startElement('baseDistance'); |
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$writer->writeElement('value',$row[9]); |
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$writer->writeElement('attributeID',"HOM"); |
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$writer->endElement(); |
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$writer->endElement(); |
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$writer->startElement("relatedIndividual"); |
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$writer->startElement("relatedItem"); |
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$writer->writeElement('relatedItemID',$row[6]); |
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$writer->writeElement('itemRelationship',"Stem"); |
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$writer->endElement(); |
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$writer->endElement(); |
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$writer->startElement('relativePlotPosition'); |
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$writer->writeElement('relativeX',$row[2]); |
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$writer->writeElement('relativeY',$row[3]); |
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$writer->endElement(); |
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$str = $row[10]; |
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while($str != "") |
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{ |
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$pos = strpos($str,','); |
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if($pos === false) |
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{ |
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$TSMcode = $str; |
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$str = ""; |
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} |
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else |
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{ |
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$TSMcode=substr($str,0,$pos); |
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$str = substr($str,$pos+1); |
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} |
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//echo $TSMcode; |
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$sqlt = "select status from attributes where attr = '" . $TSMcode . "'"; |
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//echo $sqlt; |
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$resultt = mysql_query($sqlt); |
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$rowt = mysql_fetch_row($resultt); |
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//echo $rowt[0]; |
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$writer->startElement('simpleUserdefined'); |
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$writer->writeElement('name',$rowt[0]); |
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$writer->writeElement('value',$TSMcode); |
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$writer->writeElement('methodID',$TSMcode); |
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$writer->endElement(); |
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} |
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$writer->writeElement('individualOrganismHealth',$row[11]); |
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$writer->endElement(); |
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$i++; |
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if($i == 1000) |
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{ |
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file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND); |
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$i = 0; |
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} |
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} |
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$writer->endElement(); |
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file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND); |
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$sql = "select SpeciesID,TreeID,Tag,StemId,StemTag FROM `DFtemp` WHERE plot = 'bci'"; |
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$i = 0; |
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$result = mysql_query($sql); |
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$writer->startElement('individualOrganisms'); |
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while($row = mysql_fetch_row($result)) |
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{ |
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$writer->startElement('individualOrganism'); |
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$writer->writeAttribute("id",$row[1]); |
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$writer->writeElement('taxonNameUsageConceptID',$row[0]); |
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$writer->writeElement('identificationLabel',$row[2]); |
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$writer->endElement(); |
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$writer->startElement('individualOrganism'); |
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$writer->writeAttribute("id",$row[3]); |
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$writer->writeElement('taxonNameUsageConceptID',$row[0]); |
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$writer->writeElement('identificationLabel',$row[4]); |
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$writer->endElement(); |
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$i++; |
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if($i == 1000) |
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{ |
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file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND); |
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$i = 0; |
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} |
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} |
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$writer->endElement(); |
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file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND); |
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$writer->startElement('attributes'); |
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$writer->startElement('attribute'); |
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$writer->writeAttribute("id","DBH"); |
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$writer->startElement('quantitative'); |
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$writer->writeElement('methodID'); |
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$writer->writeElement('unit','m'); |
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$writer->writeElement('precision','.01'); |
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$writer->writeElement('upperBound',"10000"); |
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$writer->writeElement('lowerBound',"0"); |
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$writer->endElement(); |
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$writer->endElement(); |
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$writer->startElement('attribute'); |
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$writer->writeAttribute("id","HOM"); |
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$writer->startElement('quantitative'); |
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$writer->writeElement('methodID'); |
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$writer->writeElement('unit','m'); |
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$writer->writeElement('precision','.01'); |
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$writer->writeElement('upperBound',"10000"); |
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368 |
$writer->writeElement('lowerBound',"0"); |
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$writer->endElement(); |
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$writer->endElement(); |
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$writer->endElement(); |
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$sql = "select attr,status from attributes"; |
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$result = mysql_query($sql); |
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$writer->startElement('methods'); |
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$writer->startElement('method'); |
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379 |
$writer->writeAttribute("id","CensusID"); |
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380 |
$writer->writeElement('description',"Census information"); |
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381 |
$writer->writeElement('name',"CensusID"); |
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$writer->endElement(); |
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while($row = mysql_fetch_row($result)) |
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{ |
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$writer->startElement('method'); |
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$writer->writeAttribute("id",$row[0]); |
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$writer->writeElement('description',$row[1]); |
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$writer->writeElement('name',$row[0]); |
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$writer->endElement(); |
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} |
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$writer->endElement(); |
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$writer->endElement(); |
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$writer->endDocument(); |
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//header('Content-type: text/xml'); |
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//echo $writer->outputMemory(); |
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$filename = "new_Xml_CTFS_row.xml"; |
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//$file = $writer->outputMemory(); |
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file_put_contents($filename, $writer->flush(true), FILE_APPEND); |
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//file_put_contents($filename,$file); |
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echo "and Veg-X file for the uploaded csv file was created"; |
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echo date("m/d/y :H:i:s",time()); |
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?> |
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<FORM METHOD="LINK" ACTION="new_Xml_CTFS_row.xml"> |
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411 |
<br/> |
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412 |
<br/> |
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413 |
<br/> |
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<INPUT TYPE="submit" VALUE="Click to See the VegX file"> |
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</FORM> |
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</body></html> |
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|
inputs/CTFS/_archive/CTFS_conversion_bci.php | ||
---|---|---|
1 |
<html><body style="background-color:yellow;"> |
|
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<h1 style="text-align:center;"> CTFS to VegX conversion </h1> |
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<?php |
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$dbhost = 'localhost'; |
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$dbuser = 's_sramteke'; |
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$dbpass = 'S6a52mxX'; |
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echo date("m/d/y :H:i:s",time()); |
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$conn = mysql_connect($dbhost,$dbuser,$dbpass) or die ('Error'); |
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$dbname = 's_sramteke'; |
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mysql_select_db($dbname); |
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//$sql = "SELECT * FROM `DFtemp`"; |
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//$result = mysql_query($sql); |
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$xmlHandle = fopen("new_Xml_CTFS_row.xml","w"); |
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$writer = new XMLWriter(); |
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$writer->openMemory(); |
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$writer->setIndent(true); |
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$writer->setIndentString(" "); |
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$writer->startDocument('1.0', 'UTF-8'); |
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$writer->startElement('vegX'); |
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$writer->writeAttribute("xsi:noNamespaceSchemaLocation", "C:/Development/Utilities/LCR.Utilities.DataImport/LCR.Utilities.MappingTool/Resources/VEGX15~1.2/veg.xsd"); |
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$writer->writeAttribute("xmlns:acc", "eml://ecoinformatics.org/access-2.0.1"); |
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$writer->writeAttribute("xmlns:cov", "eml://ecoinformatics.org/coverage-2.0.1"); |
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$writer->writeAttribute("xmlns:doc", "eml://ecoinformatics.org/documentation-2.0.1"); |
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$writer->writeAttribute("xmlns:lit", "eml://ecoinformatics.org/literature-2.0.1"); |
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$writer->writeAttribute("xmlns:party","eml://ecoinformatics.org/party-2.0.1"); |
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$writer->writeAttribute("xmlns:proj","eml://ecoinformatics.org/project-2.0.1"); |
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$writer->writeAttribute("xmlns:res","eml://ecoinformatics.org/resource-2.0.1"); |
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$writer->writeAttribute("xmlns:txt","eml://ecoinformatics.org/text-2.0.1"); |
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$writer->writeAttribute("xmlns:dwe","http://rs.tdwg.org/dwc/dwelement/"); |
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$writer->writeAttribute("xmlns:dwg","http://rs.tdwg.org/dwc/geospatial/"); |
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$writer->writeAttribute("xmlns:misc","http://www.bfn.de/misc-1.0.1"); |
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$writer->writeAttribute("xmlns:org","http://www.bfn.de/organismobservation-1.0.1"); |
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$writer->writeAttribute("xmlns:plot","http://www.bfn.de/plot-1.0.1"); |
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$writer->writeAttribute("xmlns:obs","http://www.bfn.de/plotobservation-1.0.1"); |
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$writer->writeAttribute("xmlns:tcs","http://www.tdwg.org/schemas/tcs/1.01"); |
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$writer->writeAttribute("xmlns:xsi","http://www.w3.org/2001/XMLSchema-instance"); |
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$filename = "new_Xml_CTFS_row.xml"; |
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$file = $writer->outputMemory(); |
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file_put_contents($filename,$file); |
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$i=0; |
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/*while($row = mysql_fetch_row($result)) |
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{ |
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$writer->startElement('projects'); |
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$writer->startElement('project'); |
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$writer->writeElement('title','Project 1'); |
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$writer->endElement(); |
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$writer->endElement(); |
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}*/ |
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$sql = "SELECT distinct `PlotID`, `Plot`, `QuadratID`, `QuadratName`, `gx`, `gy` FROM `DFtemp` WHERE plot = 'bci'"; |
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$result = mysql_query($sql); |
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$writer->startElement('plots'); |
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while($row = mysql_fetch_row($result)) |
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{ |
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$writer->startElement('plot'); |
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$writer->writeElement('plotUniqueIdentifier',$row[0]); |
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$writer->writeElement('plotName',$row[1]); |
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$writer->startElement('geospatial'); |
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$writer->writeElement('dwg:VerbatimLatitude',$row[4]); |
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$writer->writeElement('dwg:VerbatimLongitude',$row[5]); |
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$writer->endElement(); |
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$writer->endElement(); |
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$writer->startElement('plot'); |
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$writer->writeElement('plotUniqueIdentifier',$row[2]); |
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$writer->writeElement('plotName',$row[3]); |
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$writer->startElement('relatedPlot'); |
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$writer->startElement('relatedPlot'); |
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$writer->writeElement('relatedPlotID',$row[0]); |
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$writer->writeElement('plotRelationship',"Quadrant"); |
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$writer->endElement(); |
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$writer->endElement(); |
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$writer->endElement(); |
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$i++; |
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if($i == 1000) |
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{ |
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file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND); |
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$i = 0; |
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} |
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} |
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$writer->endElement(); |
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file_put_contents($filename, $writer->flush(true), FILE_APPEND); |
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$i=0; |
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$sql = "select MeasureID,CensusID,QuadratID, PlotCensusNumber, ExactDate,PLotID FROM `DFtemp` WHERE plot = 'bci'"; |
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$result = mysql_query($sql); |
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$writer->startElement('plotObservations'); |
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while($row = mysql_fetch_row($result)) |
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{ |
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$writer->startElement('plotObservation'); |
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$writer->writeAttribute("id",$row[0]); |
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$writer->writeElement('plotUniqueIdentifierID',$row[5]); |
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$writer->writeElement('obsStartDate',$row[4]); |
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$writer->startElement('simpleUserdefined'); |
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$writer->writeElement('name',"CensusID"); |
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$writer->writeElement('value',$row[1]); |
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$writer->writeElement('methodID',"CensusID"); |
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$writer->endElement(); |
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$writer->endElement(); |
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$writer->startElement('plotObservation'); |
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$writer->writeAttribute("id",$row[2]); |
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$writer->writeElement('plotUniqueIdentifierID',$row[2]); |
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$writer->writeElement('obsStartDate',$row[4]); |
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$writer->startElement('simpleUserdefined'); |
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$writer->writeElement('name',"CensusID"); |
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$writer->writeElement('value',$row[1]); |
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$writer->writeElement('methodID',"CensusID"); |
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$writer->endElement(); |
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$writer->endElement(); |
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$i++; |
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if($i == 1000) |
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{ |
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file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND); |
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$i = 0; |
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} |
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} |
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$writer->endElement(); |
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file_put_contents($filename, $writer->flush(true), FILE_APPEND); |
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$i=0; |
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$sql = " select Genus,Family,SpeciesName,GenusSpecies,SpeciesID,Mnemonic FROM `DFtemp` WHERE plot = 'bci'"; |
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$result = mysql_query($sql); |
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$writer->startElement('taxonConcepts'); |
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while($row = mysql_fetch_row($result)) |
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{ |
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$writer->startElement('taxonConcept'); |
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$writer->writeAttribute("id",$row[0]); |
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$writer->writeElement('tcs:Name',$row[0]); |
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$writer->writeAttribute("scientific","false"); |
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//$writer->endElement(); |
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$writer->writeElement('tcs:Rank',"Genus"); |
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$writer->endElement(); |
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$writer->startElement('taxonConcept'); |
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$writer->writeAttribute("id",$row[1]); |
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$writer->writeElement('tcs:Name',$row[1]); |
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$writer->writeAttribute("scientific","false"); |
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//$writer->endElement(); |
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$writer->writeElement('tcs:Rank',"Family"); |
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$writer->startElement('tcs:TaxonRelationships'); |
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$writer->startElement('tcs:TaxonRelationship'); |
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$writer->writeAttribute("type","is child taxon of"); |
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$writer->writeElement('tcs:ToTaxonConcept',$row[0]); |
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$writer->endElement(); |
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$writer->endElement(); |
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$writer->endElement(); |
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$writer->startElement('taxonConcept'); |
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$writer->writeAttribute("id",$row[2]); |
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$writer->startElement('tcs:Name'); |
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$writer->startAttribute("scientific"); |
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$writer->text("false"); |
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$writer->endAttribute(); |
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$writer->text($row[2]); |
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$writer->endElement(); |
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$writer->writeElement('tcs:Rank',"Species"); |
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$writer->startElement('tcs:TaxonRelationships'); |
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$writer->startElement('tcs:TaxonRelationship'); |
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$writer->writeAttribute("type","is child taxon of"); |
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$writer->writeElement('tcs:ToTaxonConcept',$row[0]); |
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$writer->endElement(); |
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$writer->startElement('tcs:TaxonRelationship'); |
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$writer->writeAttribute("type","is child taxon of"); |
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$writer->writeElement('tcs:ToTaxonConcept',$row[1]); |
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$writer->endElement(); |
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$writer->endElement(); |
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$writer->endElement(); |
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$i++; |
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if($i == 1000) |
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{ |
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file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND); |
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$i = 0; |
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} |
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} |
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$writer->endElement(); |
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$i=0; |
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file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND); |
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$sql = "select SpeciesID,Mnemonic FROM `DFtemp` WHERE plot = 'bci'"; |
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$result = mysql_query($sql); |
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$writer->startElement('taxonNameUsageConcepts'); |
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while($row = mysql_fetch_row($result)) |
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{ |
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$writer->startElement('taxonNameUsageConcept'); |
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$writer->writeAttribute("id",$row[0]); |
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$writer->writeElement('authorName'); |
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$writer->writeElement('authorCode',$row[1]); |
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$writer->endElement(); |
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$i++; |
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if($i == 1000) |
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{ |
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file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND); |
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$i = 0; |
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} |
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} |
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$writer->endElement(); |
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$i=0; |
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file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND); |
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$sql = "select MeasureID,PlotID,x,y,TreeID,Tag,StemId,StemTag,DBH,HOM,ListOfTSM,status FROM `DFtemp` WHERE plot = 'bci'"; |
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$result = mysql_query($sql); |
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$writer->startElement('individualOrganismObservations'); |
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while($row = mysql_fetch_row($result)) |
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{ |
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$writer->startElement('individualOrganismObservation'); |
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$writer->writeAttribute("id",$row[0]); |
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252 |
$writer->writeElement('plotObservationID',$row[0]); |
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253 |
$writer->writeElement('individualOrganismID',$row[4]); |
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254 |
$writer->startElement('diameterBaseDistance'); |
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255 |
$writer->startElement('diameter'); |
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256 |
$writer->writeElement('value',$row[8]); |
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257 |
$writer->writeElement('attributeID',"DBH"); |
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258 |
$writer->endElement(); |
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259 |
$writer->startElement('baseDistance'); |
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260 |
$writer->writeElement('value',$row[9]); |
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261 |
$writer->writeElement('attributeID',"HOM"); |
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$writer->endElement(); |
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263 |
$writer->endElement(); |
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264 |
|
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265 |
$writer->startElement("relatedIndividual"); |
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266 |
$writer->startElement("relatedItem"); |
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$writer->writeElement('relatedItemID',$row[6]); |
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$writer->writeElement('itemRelationship',"Stem"); |
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269 |
$writer->endElement(); |
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270 |
$writer->endElement(); |
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271 |
|
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$writer->startElement('relativePlotPosition'); |
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273 |
$writer->writeElement('relativeX',$row[2]); |
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$writer->writeElement('relativeY',$row[3]); |
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$writer->endElement(); |
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276 |
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$str = $row[10]; |
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while($str != "") |
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{ |
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280 |
$pos = strpos($str,','); |
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281 |
if($pos === false) |
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282 |
{ |
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283 |
$TSMcode = $str; |
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284 |
$str = ""; |
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285 |
} |
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286 |
else |
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{ |
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288 |
$TSMcode=substr($str,0,$pos); |
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$str = substr($str,$pos+1); |
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290 |
} |
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291 |
//echo $TSMcode; |
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292 |
$sqlt = "select status from attributes where attr = '" . $TSMcode . "'"; |
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293 |
//echo $sqlt; |
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294 |
$resultt = mysql_query($sqlt); |
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$rowt = mysql_fetch_row($resultt); |
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//echo $rowt[0]; |
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297 |
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298 |
$writer->startElement('simpleUserdefined'); |
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299 |
$writer->writeElement('name',$rowt[0]); |
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300 |
$writer->writeElement('value',$TSMcode); |
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301 |
$writer->writeElement('methodID',$TSMcode); |
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$writer->endElement(); |
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} |
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304 |
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305 |
$writer->writeElement('individualOrganismHealth',$row[11]); |
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306 |
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$writer->endElement(); |
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308 |
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$i++; |
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310 |
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311 |
if($i == 1000) |
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312 |
{ |
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file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND); |
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314 |
$i = 0; |
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315 |
} |
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316 |
} |
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317 |
$writer->endElement(); |
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318 |
file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND); |
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319 |
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320 |
$sql = "select SpeciesID,TreeID,Tag,StemId,StemTag FROM `DFtemp` WHERE plot = 'bci'"; |
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321 |
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$i = 0; |
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323 |
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324 |
$result = mysql_query($sql); |
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325 |
$writer->startElement('individualOrganisms'); |
|
326 |
while($row = mysql_fetch_row($result)) |
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327 |
{ |
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328 |
$writer->startElement('individualOrganism'); |
|
329 |
$writer->writeAttribute("id",$row[1]); |
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330 |
$writer->writeElement('taxonNameUsageConceptID',$row[0]); |
|
331 |
$writer->writeElement('identificationLabel',$row[2]); |
|
332 |
$writer->endElement(); |
|
333 |
|
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334 |
$writer->startElement('individualOrganism'); |
|
335 |
$writer->writeAttribute("id",$row[3]); |
|
336 |
$writer->writeElement('taxonNameUsageConceptID',$row[0]); |
|
337 |
$writer->writeElement('identificationLabel',$row[4]); |
|
338 |
$writer->endElement(); |
|
339 |
$i++; |
|
340 |
|
|
341 |
if($i == 1000) |
|
342 |
{ |
|
343 |
file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND); |
|
344 |
$i = 0; |
|
345 |
} |
|
346 |
} |
|
347 |
$writer->endElement(); |
|
348 |
file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND); |
|
349 |
|
|
350 |
$writer->startElement('attributes'); |
|
351 |
$writer->startElement('attribute'); |
|
352 |
$writer->writeAttribute("id","DBH"); |
|
353 |
$writer->startElement('quantitative'); |
|
354 |
$writer->writeElement('methodID'); |
|
355 |
$writer->writeElement('unit','m'); |
|
356 |
$writer->writeElement('precision','.01'); |
|
357 |
$writer->writeElement('upperBound',"10000"); |
|
358 |
$writer->writeElement('lowerBound',"0"); |
|
359 |
$writer->endElement(); |
|
360 |
$writer->endElement(); |
|
361 |
$writer->startElement('attribute'); |
|
362 |
$writer->writeAttribute("id","HOM"); |
|
363 |
$writer->startElement('quantitative'); |
|
364 |
$writer->writeElement('methodID'); |
|
365 |
$writer->writeElement('unit','m'); |
|
366 |
$writer->writeElement('precision','.01'); |
|
367 |
$writer->writeElement('upperBound',"10000"); |
|
368 |
$writer->writeElement('lowerBound',"0"); |
|
369 |
$writer->endElement(); |
|
370 |
$writer->endElement(); |
|
371 |
$writer->endElement(); |
|
372 |
|
|
373 |
|
|
374 |
|
|
375 |
$sql = "select attr,status from attributes"; |
|
376 |
$result = mysql_query($sql); |
|
377 |
$writer->startElement('methods'); |
|
378 |
$writer->startElement('method'); |
|
379 |
$writer->writeAttribute("id","CensusID"); |
|
380 |
$writer->writeElement('description',"Census information"); |
|
381 |
$writer->writeElement('name',"CensusID"); |
|
382 |
$writer->endElement(); |
|
383 |
while($row = mysql_fetch_row($result)) |
|
384 |
{ |
|
385 |
$writer->startElement('method'); |
|
386 |
$writer->writeAttribute("id",$row[0]); |
|
387 |
$writer->writeElement('description',$row[1]); |
|
388 |
$writer->writeElement('name',$row[0]); |
|
389 |
$writer->endElement(); |
|
390 |
} |
|
391 |
$writer->endElement(); |
|
392 |
|
|
393 |
$writer->endElement(); |
|
394 |
|
|
395 |
$writer->endDocument(); |
|
396 |
|
|
397 |
//header('Content-type: text/xml'); |
|
398 |
|
|
399 |
//echo $writer->outputMemory(); |
|
400 |
|
|
401 |
$filename = "new_Xml_CTFS_row.xml"; |
|
402 |
|
|
403 |
//$file = $writer->outputMemory(); |
|
404 |
file_put_contents($filename, $writer->flush(true), FILE_APPEND); |
|
405 |
//file_put_contents($filename,$file); |
|
406 |
|
|
407 |
echo "and Veg-X file for the uploaded csv file was created"; |
|
408 |
echo date("m/d/y :H:i:s",time()); |
|
409 |
?> |
|
410 |
<FORM METHOD="LINK" ACTION="new_Xml_CTFS_row.xml"> |
|
411 |
<br/> |
|
412 |
<br/> |
|
413 |
<br/> |
|
414 |
<INPUT TYPE="submit" VALUE="Click to See the VegX file"> |
|
415 |
</FORM> |
|
416 |
</body></html> |
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417 |
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Also available in: Unified diff
inputs/CTFS/: Moved CTFS_conversion_bci.php to _archive since it's just for the DFtemp (aggregated) mapping