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Revision 4310

inputs/CTFS/: Moved CTFS_conversion_bci.php to _archive since it's just for the DFtemp (aggregated) mapping

View differences:

inputs/CTFS/CTFS_conversion_bci.php
1
<html><body style="background-color:yellow;">
2
<h1 style="text-align:center;"> CTFS to VegX conversion </h1>
3

  
4
<?php
5
$dbhost = 'localhost';
6
$dbuser = 's_sramteke';
7
$dbpass = 'S6a52mxX';
8
echo date("m/d/y :H:i:s",time());
9
$conn = mysql_connect($dbhost,$dbuser,$dbpass) or die ('Error');
10

  
11
$dbname = 's_sramteke';
12
mysql_select_db($dbname);
13

  
14
//$sql = "SELECT * FROM `DFtemp`";
15
//$result = mysql_query($sql);
16

  
17
$xmlHandle = fopen("new_Xml_CTFS_row.xml","w");
18

  
19

  
20
$writer = new XMLWriter();
21
$writer->openMemory();
22
$writer->setIndent(true);
23
$writer->setIndentString("    ");
24
$writer->startDocument('1.0', 'UTF-8');
25

  
26
$writer->startElement('vegX');
27
$writer->writeAttribute("xsi:noNamespaceSchemaLocation", "C:/Development/Utilities/LCR.Utilities.DataImport/LCR.Utilities.MappingTool/Resources/VEGX15~1.2/veg.xsd");
28
$writer->writeAttribute("xmlns:acc", "eml://ecoinformatics.org/access-2.0.1");
29
$writer->writeAttribute("xmlns:cov", "eml://ecoinformatics.org/coverage-2.0.1");
30
$writer->writeAttribute("xmlns:doc", "eml://ecoinformatics.org/documentation-2.0.1");
31
$writer->writeAttribute("xmlns:lit", "eml://ecoinformatics.org/literature-2.0.1");
32
$writer->writeAttribute("xmlns:party","eml://ecoinformatics.org/party-2.0.1");
33
$writer->writeAttribute("xmlns:proj","eml://ecoinformatics.org/project-2.0.1");
34
$writer->writeAttribute("xmlns:res","eml://ecoinformatics.org/resource-2.0.1");
35
$writer->writeAttribute("xmlns:txt","eml://ecoinformatics.org/text-2.0.1");
36
$writer->writeAttribute("xmlns:dwe","http://rs.tdwg.org/dwc/dwelement/");
37
$writer->writeAttribute("xmlns:dwg","http://rs.tdwg.org/dwc/geospatial/");
38
$writer->writeAttribute("xmlns:misc","http://www.bfn.de/misc-1.0.1");
39
$writer->writeAttribute("xmlns:org","http://www.bfn.de/organismobservation-1.0.1");
40
$writer->writeAttribute("xmlns:plot","http://www.bfn.de/plot-1.0.1");
41
$writer->writeAttribute("xmlns:obs","http://www.bfn.de/plotobservation-1.0.1");
42
$writer->writeAttribute("xmlns:tcs","http://www.tdwg.org/schemas/tcs/1.01");
43
$writer->writeAttribute("xmlns:xsi","http://www.w3.org/2001/XMLSchema-instance");
44
$filename = "new_Xml_CTFS_row.xml";
45

  
46
$file = $writer->outputMemory();
47

  
48
file_put_contents($filename,$file);
49

  
50
$i=0;
51

  
52
/*while($row = mysql_fetch_row($result))
53
{
54
$writer->startElement('projects');
55

  
56
$writer->startElement('project');
57
$writer->writeElement('title','Project 1');
58
$writer->endElement();
59
$writer->endElement();
60

  
61

  
62
}*/
63

  
64
$sql = "SELECT distinct `PlotID`, `Plot`, `QuadratID`, `QuadratName`, `gx`, `gy` FROM `DFtemp` WHERE plot = 'bci'";
65

  
66
$result = mysql_query($sql);
67
$writer->startElement('plots');
68

  
69
while($row = mysql_fetch_row($result))
70
{
71

  
72
$writer->startElement('plot');
73
	$writer->writeElement('plotUniqueIdentifier',$row[0]);
74
	$writer->writeElement('plotName',$row[1]);
75

  
76
	$writer->startElement('geospatial');
77
		$writer->writeElement('dwg:VerbatimLatitude',$row[4]);
78
		$writer->writeElement('dwg:VerbatimLongitude',$row[5]);
79
	$writer->endElement();
80

  
81
$writer->endElement();
82

  
83
$writer->startElement('plot');
84
	$writer->writeElement('plotUniqueIdentifier',$row[2]);
85
	$writer->writeElement('plotName',$row[3]);
86

  
87
	$writer->startElement('relatedPlot');
88
		$writer->startElement('relatedPlot');
89
			$writer->writeElement('relatedPlotID',$row[0]);
90
			$writer->writeElement('plotRelationship',"Quadrant");
91
		$writer->endElement();
92
	$writer->endElement();
93
$writer->endElement();
94
$i++;
95
	
96
	if($i == 1000)
97
	{
98
		file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND);
99
		$i = 0;
100
	}
101
}
102
$writer->endElement();
103

  
104
file_put_contents($filename, $writer->flush(true), FILE_APPEND);
105

  
106
$i=0;
107

  
108
$sql = "select MeasureID,CensusID,QuadratID, PlotCensusNumber, ExactDate,PLotID FROM `DFtemp` WHERE plot = 'bci'";
109
$result = mysql_query($sql);
110

  
111
$writer->startElement('plotObservations');
112
while($row = mysql_fetch_row($result))
113
{
114
$writer->startElement('plotObservation');
115
	$writer->writeAttribute("id",$row[0]);
116
	$writer->writeElement('plotUniqueIdentifierID',$row[5]);
117
	$writer->writeElement('obsStartDate',$row[4]);
118
	$writer->startElement('simpleUserdefined');
119
		$writer->writeElement('name',"CensusID");
120
		$writer->writeElement('value',$row[1]);
121
		$writer->writeElement('methodID',"CensusID");
122
	$writer->endElement();
123
$writer->endElement();
124

  
125
$writer->startElement('plotObservation');
126
	$writer->writeAttribute("id",$row[2]);
127
	$writer->writeElement('plotUniqueIdentifierID',$row[2]);
128
	$writer->writeElement('obsStartDate',$row[4]);
129
	$writer->startElement('simpleUserdefined');
130
		$writer->writeElement('name',"CensusID");
131
		$writer->writeElement('value',$row[1]);
132
		$writer->writeElement('methodID',"CensusID");
133
	$writer->endElement();
134
$writer->endElement();
135

  
136
$i++;
137
	
138
	if($i == 1000)
139
	{
140
		file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND);
141
		$i = 0;
142
	}
143

  
144
}
145
$writer->endElement();
146

  
147
file_put_contents($filename, $writer->flush(true), FILE_APPEND);
148

  
149
$i=0;
150

  
151
$sql = " select Genus,Family,SpeciesName,GenusSpecies,SpeciesID,Mnemonic FROM `DFtemp` WHERE plot = 'bci'";
152

  
153
$result = mysql_query($sql);
154
$writer->startElement('taxonConcepts');
155
while($row = mysql_fetch_row($result))
156
{
157
$writer->startElement('taxonConcept');
158
	$writer->writeAttribute("id",$row[0]);
159
	$writer->writeElement('tcs:Name',$row[0]);
160
	$writer->writeAttribute("scientific","false");
161
	//$writer->endElement();
162
	$writer->writeElement('tcs:Rank',"Genus");
163
$writer->endElement();
164

  
165
$writer->startElement('taxonConcept');
166
	$writer->writeAttribute("id",$row[1]);
167
	$writer->writeElement('tcs:Name',$row[1]);
168
	$writer->writeAttribute("scientific","false");
169
	//$writer->endElement();
170
	$writer->writeElement('tcs:Rank',"Family");
171
	
172
	$writer->startElement('tcs:TaxonRelationships');
173
	$writer->startElement('tcs:TaxonRelationship');
174
		$writer->writeAttribute("type","is child taxon of");
175
		$writer->writeElement('tcs:ToTaxonConcept',$row[0]);
176
	$writer->endElement();
177
	$writer->endElement();
178
$writer->endElement();
179

  
180
$writer->startElement('taxonConcept');
181
	$writer->writeAttribute("id",$row[2]);
182
	$writer->startElement('tcs:Name');
183
		$writer->startAttribute("scientific");
184
			$writer->text("false");
185
		$writer->endAttribute();
186
		$writer->text($row[2]);
187
	$writer->endElement();
188
	$writer->writeElement('tcs:Rank',"Species");
189
	
190
	$writer->startElement('tcs:TaxonRelationships');
191
	$writer->startElement('tcs:TaxonRelationship');
192
		$writer->writeAttribute("type","is child taxon of");
193
		$writer->writeElement('tcs:ToTaxonConcept',$row[0]);
194
	$writer->endElement();
195
	$writer->startElement('tcs:TaxonRelationship');
196
		$writer->writeAttribute("type","is child taxon of");
197
		$writer->writeElement('tcs:ToTaxonConcept',$row[1]);
198
	$writer->endElement();	
199
	$writer->endElement();
200
$writer->endElement();
201

  
202
$i++;
203
	
204
	if($i == 1000)
205
	{
206
		file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND);
207
		$i = 0;
208
	}
209
	
210
}
211
$writer->endElement();
212

  
213
$i=0;
214

  
215
file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND);
216

  
217
$sql = "select SpeciesID,Mnemonic FROM `DFtemp` WHERE plot = 'bci'";
218

  
219
$result = mysql_query($sql);
220
$writer->startElement('taxonNameUsageConcepts');
221
while($row = mysql_fetch_row($result))
222
{
223
$writer->startElement('taxonNameUsageConcept');
224
	$writer->writeAttribute("id",$row[0]);
225
	$writer->writeElement('authorName');
226
	$writer->writeElement('authorCode',$row[1]);
227
$writer->endElement();
228

  
229
$i++;
230
	
231
	if($i == 1000)
232
	{
233
		file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND);
234
		$i = 0;
235
	}
236

  
237
}
238
$writer->endElement();
239

  
240
$i=0;
241

  
242
file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND);
243

  
244
$sql = "select MeasureID,PlotID,x,y,TreeID,Tag,StemId,StemTag,DBH,HOM,ListOfTSM,status FROM `DFtemp` WHERE plot = 'bci'";
245

  
246
$result = mysql_query($sql);
247
$writer->startElement('individualOrganismObservations');
248
while($row = mysql_fetch_row($result))
249
{
250
$writer->startElement('individualOrganismObservation');
251
	$writer->writeAttribute("id",$row[0]);
252
	$writer->writeElement('plotObservationID',$row[0]);
253
	$writer->writeElement('individualOrganismID',$row[4]);
254
	$writer->startElement('diameterBaseDistance');
255
	$writer->startElement('diameter');
256
	$writer->writeElement('value',$row[8]);
257
	$writer->writeElement('attributeID',"DBH");
258
	$writer->endElement();
259
	$writer->startElement('baseDistance');
260
	$writer->writeElement('value',$row[9]);
261
	$writer->writeElement('attributeID',"HOM");
262
	$writer->endElement();
263
	$writer->endElement();
264
	
265
	$writer->startElement("relatedIndividual");
266
	$writer->startElement("relatedItem");
267
	$writer->writeElement('relatedItemID',$row[6]);
268
	$writer->writeElement('itemRelationship',"Stem");
269
	$writer->endElement();
270
	$writer->endElement();
271
	
272
	$writer->startElement('relativePlotPosition');
273
	$writer->writeElement('relativeX',$row[2]);
274
	$writer->writeElement('relativeY',$row[3]);
275
	$writer->endElement();
276
	
277
	$str = $row[10];
278
	while($str != "")
279
	{
280
		$pos = strpos($str,',');
281
		if($pos === false)
282
		{
283
			$TSMcode = $str;
284
			$str = "";
285
		}
286
		else
287
		{
288
			$TSMcode=substr($str,0,$pos);
289
			$str = substr($str,$pos+1);			
290
		}		
291
		//echo $TSMcode;
292
		$sqlt = "select status from attributes where attr = '" . $TSMcode . "'";
293
		//echo $sqlt;
294
		$resultt = mysql_query($sqlt);
295
		$rowt = mysql_fetch_row($resultt);
296
		//echo $rowt[0];
297
		
298
		$writer->startElement('simpleUserdefined');
299
		$writer->writeElement('name',$rowt[0]);
300
		$writer->writeElement('value',$TSMcode);
301
		$writer->writeElement('methodID',$TSMcode);
302
		$writer->endElement();
303
	}
304
	
305
	$writer->writeElement('individualOrganismHealth',$row[11]);
306
	
307
$writer->endElement();
308

  
309
$i++;
310
	
311
	if($i == 1000)
312
	{
313
		file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND);
314
		$i = 0;
315
	}
316
}
317
$writer->endElement();
318
file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND);
319

  
320
$sql = "select SpeciesID,TreeID,Tag,StemId,StemTag FROM `DFtemp` WHERE plot = 'bci'";
321

  
322
$i = 0;
323

  
324
$result = mysql_query($sql);
325
$writer->startElement('individualOrganisms');
326
while($row = mysql_fetch_row($result))
327
{
328
	$writer->startElement('individualOrganism');
329
	$writer->writeAttribute("id",$row[1]);
330
	$writer->writeElement('taxonNameUsageConceptID',$row[0]);
331
	$writer->writeElement('identificationLabel',$row[2]);
332
	$writer->endElement();
333
	
334
	$writer->startElement('individualOrganism');
335
	$writer->writeAttribute("id",$row[3]);
336
	$writer->writeElement('taxonNameUsageConceptID',$row[0]);
337
	$writer->writeElement('identificationLabel',$row[4]);
338
	$writer->endElement();
339
	$i++;
340
	
341
	if($i == 1000)
342
	{
343
		file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND);
344
		$i = 0;
345
	}
346
}
347
$writer->endElement();
348
file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND);
349

  
350
$writer->startElement('attributes');
351
$writer->startElement('attribute');
352
	$writer->writeAttribute("id","DBH");
353
	$writer->startElement('quantitative');
354
		$writer->writeElement('methodID');
355
		$writer->writeElement('unit','m');
356
		$writer->writeElement('precision','.01');
357
		$writer->writeElement('upperBound',"10000");
358
		$writer->writeElement('lowerBound',"0");
359
	$writer->endElement();
360
$writer->endElement();
361
$writer->startElement('attribute');
362
	$writer->writeAttribute("id","HOM");
363
	$writer->startElement('quantitative');
364
		$writer->writeElement('methodID');
365
		$writer->writeElement('unit','m');
366
		$writer->writeElement('precision','.01');
367
		$writer->writeElement('upperBound',"10000");
368
		$writer->writeElement('lowerBound',"0");
369
	$writer->endElement();
370
$writer->endElement();
371
$writer->endElement();
372

  
373

  
374

  
375
$sql = "select attr,status from attributes";
376
$result = mysql_query($sql);
377
$writer->startElement('methods');
378
$writer->startElement('method');
379
	$writer->writeAttribute("id","CensusID");
380
	$writer->writeElement('description',"Census information");
381
	$writer->writeElement('name',"CensusID");
382
$writer->endElement();
383
while($row = mysql_fetch_row($result))
384
{
385
$writer->startElement('method');
386
	$writer->writeAttribute("id",$row[0]);
387
	$writer->writeElement('description',$row[1]);
388
	$writer->writeElement('name',$row[0]);
389
$writer->endElement();
390
}
391
$writer->endElement();
392

  
393
$writer->endElement();
394

  
395
$writer->endDocument();
396

  
397
//header('Content-type: text/xml');
398

  
399
//echo $writer->outputMemory();
400

  
401
$filename = "new_Xml_CTFS_row.xml";
402

  
403
//$file = $writer->outputMemory();
404
file_put_contents($filename, $writer->flush(true), FILE_APPEND);
405
//file_put_contents($filename,$file);
406

  
407
echo "and Veg-X file for the uploaded csv file was created";
408
echo date("m/d/y :H:i:s",time());
409
?>
410
<FORM METHOD="LINK" ACTION="new_Xml_CTFS_row.xml">
411
<br/>
412
<br/>
413
<br/>
414
<INPUT TYPE="submit" VALUE="Click to See the VegX file">
415
</FORM>
416
</body></html>
417

  
418

  
419

  
420

  
421

  
422

  
423

  
424

  
425

  
426

  
427

  
inputs/CTFS/_archive/CTFS_conversion_bci.php
1
<html><body style="background-color:yellow;">
2
<h1 style="text-align:center;"> CTFS to VegX conversion </h1>
3

  
4
<?php
5
$dbhost = 'localhost';
6
$dbuser = 's_sramteke';
7
$dbpass = 'S6a52mxX';
8
echo date("m/d/y :H:i:s",time());
9
$conn = mysql_connect($dbhost,$dbuser,$dbpass) or die ('Error');
10

  
11
$dbname = 's_sramteke';
12
mysql_select_db($dbname);
13

  
14
//$sql = "SELECT * FROM `DFtemp`";
15
//$result = mysql_query($sql);
16

  
17
$xmlHandle = fopen("new_Xml_CTFS_row.xml","w");
18

  
19

  
20
$writer = new XMLWriter();
21
$writer->openMemory();
22
$writer->setIndent(true);
23
$writer->setIndentString("    ");
24
$writer->startDocument('1.0', 'UTF-8');
25

  
26
$writer->startElement('vegX');
27
$writer->writeAttribute("xsi:noNamespaceSchemaLocation", "C:/Development/Utilities/LCR.Utilities.DataImport/LCR.Utilities.MappingTool/Resources/VEGX15~1.2/veg.xsd");
28
$writer->writeAttribute("xmlns:acc", "eml://ecoinformatics.org/access-2.0.1");
29
$writer->writeAttribute("xmlns:cov", "eml://ecoinformatics.org/coverage-2.0.1");
30
$writer->writeAttribute("xmlns:doc", "eml://ecoinformatics.org/documentation-2.0.1");
31
$writer->writeAttribute("xmlns:lit", "eml://ecoinformatics.org/literature-2.0.1");
32
$writer->writeAttribute("xmlns:party","eml://ecoinformatics.org/party-2.0.1");
33
$writer->writeAttribute("xmlns:proj","eml://ecoinformatics.org/project-2.0.1");
34
$writer->writeAttribute("xmlns:res","eml://ecoinformatics.org/resource-2.0.1");
35
$writer->writeAttribute("xmlns:txt","eml://ecoinformatics.org/text-2.0.1");
36
$writer->writeAttribute("xmlns:dwe","http://rs.tdwg.org/dwc/dwelement/");
37
$writer->writeAttribute("xmlns:dwg","http://rs.tdwg.org/dwc/geospatial/");
38
$writer->writeAttribute("xmlns:misc","http://www.bfn.de/misc-1.0.1");
39
$writer->writeAttribute("xmlns:org","http://www.bfn.de/organismobservation-1.0.1");
40
$writer->writeAttribute("xmlns:plot","http://www.bfn.de/plot-1.0.1");
41
$writer->writeAttribute("xmlns:obs","http://www.bfn.de/plotobservation-1.0.1");
42
$writer->writeAttribute("xmlns:tcs","http://www.tdwg.org/schemas/tcs/1.01");
43
$writer->writeAttribute("xmlns:xsi","http://www.w3.org/2001/XMLSchema-instance");
44
$filename = "new_Xml_CTFS_row.xml";
45

  
46
$file = $writer->outputMemory();
47

  
48
file_put_contents($filename,$file);
49

  
50
$i=0;
51

  
52
/*while($row = mysql_fetch_row($result))
53
{
54
$writer->startElement('projects');
55

  
56
$writer->startElement('project');
57
$writer->writeElement('title','Project 1');
58
$writer->endElement();
59
$writer->endElement();
60

  
61

  
62
}*/
63

  
64
$sql = "SELECT distinct `PlotID`, `Plot`, `QuadratID`, `QuadratName`, `gx`, `gy` FROM `DFtemp` WHERE plot = 'bci'";
65

  
66
$result = mysql_query($sql);
67
$writer->startElement('plots');
68

  
69
while($row = mysql_fetch_row($result))
70
{
71

  
72
$writer->startElement('plot');
73
	$writer->writeElement('plotUniqueIdentifier',$row[0]);
74
	$writer->writeElement('plotName',$row[1]);
75

  
76
	$writer->startElement('geospatial');
77
		$writer->writeElement('dwg:VerbatimLatitude',$row[4]);
78
		$writer->writeElement('dwg:VerbatimLongitude',$row[5]);
79
	$writer->endElement();
80

  
81
$writer->endElement();
82

  
83
$writer->startElement('plot');
84
	$writer->writeElement('plotUniqueIdentifier',$row[2]);
85
	$writer->writeElement('plotName',$row[3]);
86

  
87
	$writer->startElement('relatedPlot');
88
		$writer->startElement('relatedPlot');
89
			$writer->writeElement('relatedPlotID',$row[0]);
90
			$writer->writeElement('plotRelationship',"Quadrant");
91
		$writer->endElement();
92
	$writer->endElement();
93
$writer->endElement();
94
$i++;
95
	
96
	if($i == 1000)
97
	{
98
		file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND);
99
		$i = 0;
100
	}
101
}
102
$writer->endElement();
103

  
104
file_put_contents($filename, $writer->flush(true), FILE_APPEND);
105

  
106
$i=0;
107

  
108
$sql = "select MeasureID,CensusID,QuadratID, PlotCensusNumber, ExactDate,PLotID FROM `DFtemp` WHERE plot = 'bci'";
109
$result = mysql_query($sql);
110

  
111
$writer->startElement('plotObservations');
112
while($row = mysql_fetch_row($result))
113
{
114
$writer->startElement('plotObservation');
115
	$writer->writeAttribute("id",$row[0]);
116
	$writer->writeElement('plotUniqueIdentifierID',$row[5]);
117
	$writer->writeElement('obsStartDate',$row[4]);
118
	$writer->startElement('simpleUserdefined');
119
		$writer->writeElement('name',"CensusID");
120
		$writer->writeElement('value',$row[1]);
121
		$writer->writeElement('methodID',"CensusID");
122
	$writer->endElement();
123
$writer->endElement();
124

  
125
$writer->startElement('plotObservation');
126
	$writer->writeAttribute("id",$row[2]);
127
	$writer->writeElement('plotUniqueIdentifierID',$row[2]);
128
	$writer->writeElement('obsStartDate',$row[4]);
129
	$writer->startElement('simpleUserdefined');
130
		$writer->writeElement('name',"CensusID");
131
		$writer->writeElement('value',$row[1]);
132
		$writer->writeElement('methodID',"CensusID");
133
	$writer->endElement();
134
$writer->endElement();
135

  
136
$i++;
137
	
138
	if($i == 1000)
139
	{
140
		file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND);
141
		$i = 0;
142
	}
143

  
144
}
145
$writer->endElement();
146

  
147
file_put_contents($filename, $writer->flush(true), FILE_APPEND);
148

  
149
$i=0;
150

  
151
$sql = " select Genus,Family,SpeciesName,GenusSpecies,SpeciesID,Mnemonic FROM `DFtemp` WHERE plot = 'bci'";
152

  
153
$result = mysql_query($sql);
154
$writer->startElement('taxonConcepts');
155
while($row = mysql_fetch_row($result))
156
{
157
$writer->startElement('taxonConcept');
158
	$writer->writeAttribute("id",$row[0]);
159
	$writer->writeElement('tcs:Name',$row[0]);
160
	$writer->writeAttribute("scientific","false");
161
	//$writer->endElement();
162
	$writer->writeElement('tcs:Rank',"Genus");
163
$writer->endElement();
164

  
165
$writer->startElement('taxonConcept');
166
	$writer->writeAttribute("id",$row[1]);
167
	$writer->writeElement('tcs:Name',$row[1]);
168
	$writer->writeAttribute("scientific","false");
169
	//$writer->endElement();
170
	$writer->writeElement('tcs:Rank',"Family");
171
	
172
	$writer->startElement('tcs:TaxonRelationships');
173
	$writer->startElement('tcs:TaxonRelationship');
174
		$writer->writeAttribute("type","is child taxon of");
175
		$writer->writeElement('tcs:ToTaxonConcept',$row[0]);
176
	$writer->endElement();
177
	$writer->endElement();
178
$writer->endElement();
179

  
180
$writer->startElement('taxonConcept');
181
	$writer->writeAttribute("id",$row[2]);
182
	$writer->startElement('tcs:Name');
183
		$writer->startAttribute("scientific");
184
			$writer->text("false");
185
		$writer->endAttribute();
186
		$writer->text($row[2]);
187
	$writer->endElement();
188
	$writer->writeElement('tcs:Rank',"Species");
189
	
190
	$writer->startElement('tcs:TaxonRelationships');
191
	$writer->startElement('tcs:TaxonRelationship');
192
		$writer->writeAttribute("type","is child taxon of");
193
		$writer->writeElement('tcs:ToTaxonConcept',$row[0]);
194
	$writer->endElement();
195
	$writer->startElement('tcs:TaxonRelationship');
196
		$writer->writeAttribute("type","is child taxon of");
197
		$writer->writeElement('tcs:ToTaxonConcept',$row[1]);
198
	$writer->endElement();	
199
	$writer->endElement();
200
$writer->endElement();
201

  
202
$i++;
203
	
204
	if($i == 1000)
205
	{
206
		file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND);
207
		$i = 0;
208
	}
209
	
210
}
211
$writer->endElement();
212

  
213
$i=0;
214

  
215
file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND);
216

  
217
$sql = "select SpeciesID,Mnemonic FROM `DFtemp` WHERE plot = 'bci'";
218

  
219
$result = mysql_query($sql);
220
$writer->startElement('taxonNameUsageConcepts');
221
while($row = mysql_fetch_row($result))
222
{
223
$writer->startElement('taxonNameUsageConcept');
224
	$writer->writeAttribute("id",$row[0]);
225
	$writer->writeElement('authorName');
226
	$writer->writeElement('authorCode',$row[1]);
227
$writer->endElement();
228

  
229
$i++;
230
	
231
	if($i == 1000)
232
	{
233
		file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND);
234
		$i = 0;
235
	}
236

  
237
}
238
$writer->endElement();
239

  
240
$i=0;
241

  
242
file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND);
243

  
244
$sql = "select MeasureID,PlotID,x,y,TreeID,Tag,StemId,StemTag,DBH,HOM,ListOfTSM,status FROM `DFtemp` WHERE plot = 'bci'";
245

  
246
$result = mysql_query($sql);
247
$writer->startElement('individualOrganismObservations');
248
while($row = mysql_fetch_row($result))
249
{
250
$writer->startElement('individualOrganismObservation');
251
	$writer->writeAttribute("id",$row[0]);
252
	$writer->writeElement('plotObservationID',$row[0]);
253
	$writer->writeElement('individualOrganismID',$row[4]);
254
	$writer->startElement('diameterBaseDistance');
255
	$writer->startElement('diameter');
256
	$writer->writeElement('value',$row[8]);
257
	$writer->writeElement('attributeID',"DBH");
258
	$writer->endElement();
259
	$writer->startElement('baseDistance');
260
	$writer->writeElement('value',$row[9]);
261
	$writer->writeElement('attributeID',"HOM");
262
	$writer->endElement();
263
	$writer->endElement();
264
	
265
	$writer->startElement("relatedIndividual");
266
	$writer->startElement("relatedItem");
267
	$writer->writeElement('relatedItemID',$row[6]);
268
	$writer->writeElement('itemRelationship',"Stem");
269
	$writer->endElement();
270
	$writer->endElement();
271
	
272
	$writer->startElement('relativePlotPosition');
273
	$writer->writeElement('relativeX',$row[2]);
274
	$writer->writeElement('relativeY',$row[3]);
275
	$writer->endElement();
276
	
277
	$str = $row[10];
278
	while($str != "")
279
	{
280
		$pos = strpos($str,',');
281
		if($pos === false)
282
		{
283
			$TSMcode = $str;
284
			$str = "";
285
		}
286
		else
287
		{
288
			$TSMcode=substr($str,0,$pos);
289
			$str = substr($str,$pos+1);			
290
		}		
291
		//echo $TSMcode;
292
		$sqlt = "select status from attributes where attr = '" . $TSMcode . "'";
293
		//echo $sqlt;
294
		$resultt = mysql_query($sqlt);
295
		$rowt = mysql_fetch_row($resultt);
296
		//echo $rowt[0];
297
		
298
		$writer->startElement('simpleUserdefined');
299
		$writer->writeElement('name',$rowt[0]);
300
		$writer->writeElement('value',$TSMcode);
301
		$writer->writeElement('methodID',$TSMcode);
302
		$writer->endElement();
303
	}
304
	
305
	$writer->writeElement('individualOrganismHealth',$row[11]);
306
	
307
$writer->endElement();
308

  
309
$i++;
310
	
311
	if($i == 1000)
312
	{
313
		file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND);
314
		$i = 0;
315
	}
316
}
317
$writer->endElement();
318
file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND);
319

  
320
$sql = "select SpeciesID,TreeID,Tag,StemId,StemTag FROM `DFtemp` WHERE plot = 'bci'";
321

  
322
$i = 0;
323

  
324
$result = mysql_query($sql);
325
$writer->startElement('individualOrganisms');
326
while($row = mysql_fetch_row($result))
327
{
328
	$writer->startElement('individualOrganism');
329
	$writer->writeAttribute("id",$row[1]);
330
	$writer->writeElement('taxonNameUsageConceptID',$row[0]);
331
	$writer->writeElement('identificationLabel',$row[2]);
332
	$writer->endElement();
333
	
334
	$writer->startElement('individualOrganism');
335
	$writer->writeAttribute("id",$row[3]);
336
	$writer->writeElement('taxonNameUsageConceptID',$row[0]);
337
	$writer->writeElement('identificationLabel',$row[4]);
338
	$writer->endElement();
339
	$i++;
340
	
341
	if($i == 1000)
342
	{
343
		file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND);
344
		$i = 0;
345
	}
346
}
347
$writer->endElement();
348
file_put_contents('new_Xml_CTFS_row.xml', $writer->flush(true), FILE_APPEND);
349

  
350
$writer->startElement('attributes');
351
$writer->startElement('attribute');
352
	$writer->writeAttribute("id","DBH");
353
	$writer->startElement('quantitative');
354
		$writer->writeElement('methodID');
355
		$writer->writeElement('unit','m');
356
		$writer->writeElement('precision','.01');
357
		$writer->writeElement('upperBound',"10000");
358
		$writer->writeElement('lowerBound',"0");
359
	$writer->endElement();
360
$writer->endElement();
361
$writer->startElement('attribute');
362
	$writer->writeAttribute("id","HOM");
363
	$writer->startElement('quantitative');
364
		$writer->writeElement('methodID');
365
		$writer->writeElement('unit','m');
366
		$writer->writeElement('precision','.01');
367
		$writer->writeElement('upperBound',"10000");
368
		$writer->writeElement('lowerBound',"0");
369
	$writer->endElement();
370
$writer->endElement();
371
$writer->endElement();
372

  
373

  
374

  
375
$sql = "select attr,status from attributes";
376
$result = mysql_query($sql);
377
$writer->startElement('methods');
378
$writer->startElement('method');
379
	$writer->writeAttribute("id","CensusID");
380
	$writer->writeElement('description',"Census information");
381
	$writer->writeElement('name',"CensusID");
382
$writer->endElement();
383
while($row = mysql_fetch_row($result))
384
{
385
$writer->startElement('method');
386
	$writer->writeAttribute("id",$row[0]);
387
	$writer->writeElement('description',$row[1]);
388
	$writer->writeElement('name',$row[0]);
389
$writer->endElement();
390
}
391
$writer->endElement();
392

  
393
$writer->endElement();
394

  
395
$writer->endDocument();
396

  
397
//header('Content-type: text/xml');
398

  
399
//echo $writer->outputMemory();
400

  
401
$filename = "new_Xml_CTFS_row.xml";
402

  
403
//$file = $writer->outputMemory();
404
file_put_contents($filename, $writer->flush(true), FILE_APPEND);
405
//file_put_contents($filename,$file);
406

  
407
echo "and Veg-X file for the uploaded csv file was created";
408
echo date("m/d/y :H:i:s",time());
409
?>
410
<FORM METHOD="LINK" ACTION="new_Xml_CTFS_row.xml">
411
<br/>
412
<br/>
413
<br/>
414
<INPUT TYPE="submit" VALUE="Click to See the VegX file">
415
</FORM>
416
</body></html>
417

  
418

  
419

  
420

  
421

  
422

  
423

  
424

  
425

  
426

  
427

  

Also available in: Unified diff