Revision 4317
Added by Aaron Marcuse-Kubitza over 12 years ago
| inputs/CTFS/_1.organisms.disabled/test.xml.ref | ||
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Put template: |
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<VegBIEN> |
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<plantobservation id="-1"> |
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<aggregateoccurrence_id merge="1"> |
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<aggregateoccurrence merge="1"> |
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<taxonoccurrence_id merge="1"> |
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<taxonoccurrence> |
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<locationevent_id> |
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<locationevent> |
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<location_id> |
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<location> |
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<area>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/area</area> |
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<elevation> |
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<_alt> |
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<1>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/verbatimElevation</1> |
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<2> |
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<_avg> |
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<max> |
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<_units> |
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<default>m</default> |
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<to>m</to> |
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<to></to> |
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<value><_rangeEnd><value>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/maximumElevationInMeters</value></_rangeEnd></value> |
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</_units> |
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</max> |
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<min> |
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<_units> |
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<default>m</default> |
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<to>m</to> |
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<to></to> |
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<value><_rangeStart><value>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/minimumElevationInMeters</value></_rangeStart></value> |
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</_units> |
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</min> |
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</_avg> |
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</2> |
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</_alt> |
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</elevation> |
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<elevationrange> |
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<_range> |
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<from> |
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<_units> |
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<default>m</default> |
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<to>m</to> |
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<to></to> |
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<value><_rangeStart><value>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/minimumElevationInMeters</value></_rangeStart></value> |
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</_units> |
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</from> |
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<to> |
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<_units> |
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<default>m</default> |
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<to>m</to> |
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<to></to> |
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<value><_rangeEnd><value>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/maximumElevationInMeters</value></_rangeEnd></value> |
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</_units> |
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</to> |
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</_range> |
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</elevationrange> |
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<landform>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/landform</landform> |
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<locationdetermination> |
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<coordsaccuracy>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/CoordinateUncertaintyInMeters</coordsaccuracy> |
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<footprintgeometry_dwc>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/FootprintWKT</footprintgeometry_dwc> |
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<latitude>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/DecimalLatitude</latitude> |
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<longitude>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/DecimalLongitude</longitude> |
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<namedplace_id> |
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<_simplifyPath> |
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<next>parent_id/namedplace</next> |
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<require>placename</require> |
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<path> |
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<namedplace> |
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<rank>county</rank> |
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<placename>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/location[placeType=county]/placeName</placename> |
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<parent_id> |
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<namedplace> |
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<rank>stateProvince</rank> |
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<placename>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/location[placeType=state]/placeName</placename> |
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<parent_id> |
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<namedplace> |
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<rank>country</rank> |
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<placename>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/location[placeType=country]/placeName</placename> |
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<parent_id> |
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<namedplace> |
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<rank>continent</rank> |
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<placename>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/location[placeType=continent]/placeName</placename> |
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</namedplace> |
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</parent_id> |
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</namedplace> |
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</parent_id> |
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</namedplace> |
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</parent_id> |
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</namedplace> |
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</path> |
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</_simplifyPath> |
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</namedplace_id> |
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</locationdetermination> |
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<locationnarrative>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/locationNarrative</locationnarrative> |
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<notespublic>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/note</notespublic> |
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<slopeaspect><_compass><value>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/slopeAspect</value></_compass></slopeaspect> |
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<slopegradient>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/slopeGradient</slopegradient> |
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<sourceaccessioncode> |
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<_merge> |
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<1> |
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<_alt> |
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<1>$/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier</1> |
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<2>$/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotName</2> |
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</_alt> |
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</1> |
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<2> |
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<_alt> |
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<1>$/*ID->/*s/plotObservation/plotUniqueIdentifierID->/*s/plot[plotUniqueIdentifier]/plotUniqueIdentifier</1> |
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<2>$/*ID->/*s/plotObservation/plotUniqueIdentifierID->/*s/plot[plotUniqueIdentifier]/plotName</2> |
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</_alt> |
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</2> |
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</_merge> |
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</sourceaccessioncode> |
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</location> |
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</location_id> |
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<method_id><method><name>$/*ID->/*s/plotObservation/simpleUserdefined[name=method]/*ID/method/name</name></method></method_id> |
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<project_id> |
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<project> |
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<projectname>$/*ID->/*s/plotObservation/*ID->/*s/project/title[@id=name]</projectname> |
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<sourceaccessioncode>$/*ID->/*s/plotObservation/*ID->/*s/project/title[@id=sourceAccessionCode]</sourceaccessioncode> |
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</project> |
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</project_id> |
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<authorlocationcode>$/*ID->/*s/plotObservation/plotUniqueIdentifierID->/*s/plot[plotUniqueIdentifier]/plotName</authorlocationcode> |
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<commclass> |
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<commdetermination> |
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<commconcept_id> |
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<commconcept> |
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<commname_id><commname><commname>$/*ID->/*s/plotObservation->/*s/communityDetermination[*ID]/*s/communityConcept/commonName</commname></commname></commname_id> |
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<commdescription>$/*ID->/*s/plotObservation->/*s/communityDetermination[*ID]/*s/communityConcept/name</commdescription> |
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</commconcept> |
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</commconcept_id> |
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</commdetermination> |
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</commclass> |
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<obsenddate>$/*ID->/*s/plotObservation/obsEndDate</obsenddate> |
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<obsstartdate>$/*ID->/*s/plotObservation/obsStartDate</obsstartdate> |
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<parent_id> |
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<locationevent> |
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<location_id> |
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<location> |
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<sourceaccessioncode> |
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<_alt> |
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<1>$/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier</1> |
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<2>$/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotName</2> |
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</_alt> |
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</sourceaccessioncode> |
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</location> |
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</location_id> |
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<authorlocationcode>$/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotName</authorlocationcode> |
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<sourceaccessioncode>$/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier</sourceaccessioncode> |
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</locationevent> |
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</parent_id> |
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<precipitation>$/*ID->/*s/plotObservation/simpleUserdefined[name=precipitation]/value</precipitation> |
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<soilobs> |
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<acidity>$/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=acidity]/value</acidity> |
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<basesaturation>$/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=base]/value</basesaturation> |
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<calcium>$/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=calcium]/value</calcium> |
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<carbon>$/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=carbon]/value</carbon> |
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<cationexchangecapacity>$/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=cationExchangeCapacity]/value</cationexchangecapacity> |
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<clay>$/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=clay]/value</clay> |
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<conductivity>$/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=conductivity]/value</conductivity> |
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<magnesium>$/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/magnesium</magnesium> |
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<nitrogen>$/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/nitrogen</nitrogen> |
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<organic>$/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=organic]/value</organic> |
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<ph>$/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/ph</ph> |
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<phosphorus>$/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/phosphorus</phosphorus> |
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<potassium>$/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/potassium</potassium> |
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<sand>$/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=sand]/value</sand> |
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<silt>$/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=silt]/value</silt> |
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<sodium>$/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=sodium]/value</sodium> |
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<texture>$/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=texture]/value</texture> |
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</soilobs> |
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<sourceaccessioncode>$/*ID->/*s/plotObservation/plotUniqueIdentifierID->/*s/plot[plotUniqueIdentifier]/plotUniqueIdentifier</sourceaccessioncode> |
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<temperature>$/*ID->/*s/plotObservation/temperature</temperature> |
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<waterdepth> |
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<_avg> |
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<max> |
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<_units> |
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<default>m</default> |
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<to>m</to> |
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<to></to> |
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<value>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/maximumDepthInMeters</value> |
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</_units> |
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</max> |
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<min> |
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<_units> |
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<default>m</default> |
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<to>m</to> |
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<to></to> |
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<value>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/minimumDepthInMeters</value> |
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</_units> |
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</min> |
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</_avg> |
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</waterdepth> |
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</locationevent> |
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</locationevent_id> |
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<growthform>$/simpleUserdefined[name=growthForm]/value</growthform> |
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<sourceaccessioncode> |
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<_alt> |
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<3>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=binom])/tcs:Name</3> |
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<1>$/@id</1> |
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<2>$/simpleUserdefined[name=authorPlantCode]/value</2> |
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</_alt> |
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</sourceaccessioncode> |
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<taxondetermination> |
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<role>computer</role> |
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<plantconcept_id> |
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<plantconcept> |
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<plantname_id> |
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<_simplifyPath> |
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<next>parent_id/plantname</next> |
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<require>plantname</require> |
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<path> |
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<plantname> |
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<rank>binomial</rank> |
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<parent_id> |
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<plantname> |
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<rank>authority</rank> |
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<parent_id> |
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<plantname> |
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<rank>subspecies</rank> |
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<plantname> |
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<_name> |
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<first>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=TaxonomicRankBelowSubspeciesEnum])/tcs:Rank</first> |
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<last>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=TaxonomicRankBelowSubspeciesEnum])/tcs:Name</last> |
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</_name> |
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</plantname> |
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<parent_id> |
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<plantname> |
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<rank>species</rank> |
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<plantname>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=sp])/tcs:Name</plantname> |
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<parent_id> |
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<plantname> |
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<rank>genus</rank> |
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<plantname>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=gen])/tcs:Name</plantname> |
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<parent_id> |
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<plantname> |
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<rank>family</rank> |
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<plantname>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=fam])/tcs:Name</plantname> |
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</plantname> |
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</parent_id> |
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</plantname> |
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</parent_id> |
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</plantname> |
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</parent_id> |
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</plantname> |
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</parent_id> |
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<plantname>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=auth])/tcs:Name</plantname> |
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</plantname> |
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</parent_id> |
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</plantname> |
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</path> |
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</_simplifyPath> |
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</plantname_id> |
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</plantconcept> |
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</plantconcept_id> |
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<iscurrent>true</iscurrent> |
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</taxondetermination> |
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<taxondetermination> |
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<role>identifier</role> |
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<plantconcept_id> |
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<plantconcept> |
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<plantname_id> |
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<_simplifyPath> |
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<next>parent_id/plantname</next> |
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<require>plantname</require> |
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<path> |
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<plantname> |
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<rank>binomial</rank> |
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| 270 |
<plantname> |
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| 271 |
<_name> |
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<last>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=binom])/fit</last> |
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<first>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=binom])/tcs:Name</first> |
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</_name> |
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</plantname> |
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<parent_id> |
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| 277 |
<plantname> |
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| 278 |
<rank>authority</rank> |
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| 279 |
<parent_id> |
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| 280 |
<plantname> |
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| 281 |
<rank>subspecies</rank> |
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<plantname>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=ssp])/tcs:Name</plantname> |
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<parent_id> |
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| 284 |
<plantname> |
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| 285 |
<rank>species</rank> |
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| 286 |
<plantname>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank=Species])/tcs:Name</plantname> |
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| 287 |
<parent_id> |
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| 288 |
<plantname> |
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| 289 |
<rank>genus</rank> |
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| 290 |
<plantname>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank=Genus])/tcs:Name</plantname> |
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| 291 |
<parent_id> |
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| 292 |
<plantname> |
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| 293 |
<rank>family</rank> |
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| 294 |
<plantname>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank=Family])/tcs:Name</plantname> |
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| 295 |
<parent_id> |
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| 296 |
<plantname> |
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| 297 |
<rank>order</rank> |
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| 298 |
<plantname>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=ord])/tcs:Name</plantname> |
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| 299 |
<parent_id> |
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| 300 |
<plantname> |
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| 301 |
<rank>class</rank> |
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| 302 |
<plantname>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=cl])/tcs:Name</plantname> |
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| 303 |
<parent_id> |
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| 304 |
<plantname> |
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| 305 |
<rank>subkingdom</rank> |
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| 306 |
<plantname>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=phyl_div])/tcs:Name</plantname> |
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| 307 |
<parent_id> |
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| 308 |
<plantname> |
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<rank>kingdom</rank> |
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| 310 |
<plantname>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=reg])/tcs:Name</plantname> |
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</plantname> |
|
| 312 |
</parent_id> |
|
| 313 |
</plantname> |
|
| 314 |
</parent_id> |
|
| 315 |
</plantname> |
|
| 316 |
</parent_id> |
|
| 317 |
</plantname> |
|
| 318 |
</parent_id> |
|
| 319 |
</plantname> |
|
| 320 |
</parent_id> |
|
| 321 |
</plantname> |
|
| 322 |
</parent_id> |
|
| 323 |
</plantname> |
|
| 324 |
</parent_id> |
|
| 325 |
</plantname> |
|
| 326 |
</parent_id> |
|
| 327 |
<plantname>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=auth])/tcs:Name</plantname> |
|
| 328 |
</plantname> |
|
| 329 |
</parent_id> |
|
| 330 |
</plantname> |
|
| 331 |
</path> |
|
| 332 |
</_simplifyPath> |
|
| 333 |
</plantname_id> |
|
| 334 |
</plantconcept> |
|
| 335 |
</plantconcept_id> |
|
| 336 |
<taxonfit>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=binom])/fit</taxonfit> |
|
| 337 |
<isoriginal>true</isoriginal> |
|
| 338 |
<iscurrent>true</iscurrent> |
|
| 339 |
</taxondetermination> |
|
| 340 |
<verbatimcollectorname> |
|
| 341 |
<_name> |
|
| 342 |
<first>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/givenName</first> |
|
| 343 |
<last>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/surName</last> |
|
| 344 |
</_name> |
|
| 345 |
</verbatimcollectorname> |
|
| 346 |
</taxonoccurrence> |
|
| 347 |
</taxonoccurrence_id> |
|
| 348 |
<count>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/aggregateOrganismObservation[*ID]/*/aggregateValue/value</count> |
|
| 349 |
<cover>$/volumeCanopy/*ID->/*s/attribute/ordinal/coverPercent</cover> |
|
| 350 |
<definedvalue fkey="tablerecord_id"> |
|
| 351 |
<userdefined_id> |
|
| 352 |
<userdefined> |
|
| 353 |
<tablename>aggregateoccurrence</tablename> |
|
| 354 |
<userdefinedname>censusNo</userdefinedname> |
|
| 355 |
</userdefined> |
|
| 356 |
</userdefined_id> |
|
| 357 |
<definedvalue>$/*ID->/*s/plotObservation/simpleUserdefined[name=CensusNumber]/value</definedvalue> |
|
| 358 |
</definedvalue> |
|
| 359 |
<linecover>$/volumeCanopy/value</linecover> |
|
| 360 |
</aggregateoccurrence> |
|
| 361 |
</aggregateoccurrence_id> |
|
| 362 |
<authorplantcode>$/simpleUserdefined[name=authorPlantCode]/value</authorplantcode> |
|
| 363 |
<overallheight> |
|
| 364 |
<_alt> |
|
| 365 |
<0>$/height</0> |
|
| 366 |
<1>$/simpleUserdefined[name=height]/value</1> |
|
| 367 |
</_alt> |
|
| 368 |
</overallheight> |
|
| 369 |
<sourceaccessioncode>$/@id</sourceaccessioncode> |
|
| 370 |
<stemobservation> |
|
| 371 |
<stemtag> |
|
| 372 |
<iscurrent> |
|
| 373 |
<_alt> |
|
| 374 |
<2>true</2> |
|
| 375 |
<1>false</1> |
|
| 376 |
</_alt> |
|
| 377 |
</iscurrent> |
|
| 378 |
<tag>$/*ID->/*s/individualOrganism/identificationLabel[@id=1]</tag> |
|
| 379 |
</stemtag> |
|
| 380 |
<stemtag> |
|
| 381 |
<iscurrent>true</iscurrent> |
|
| 382 |
<tag>$/*ID->/*s/individualOrganism/identificationLabel[@id=2]</tag> |
|
| 383 |
</stemtag> |
|
| 384 |
<xposition>$/relativePlotPosition/relativeX</xposition> |
|
| 385 |
<yposition>$/relativePlotPosition/relativeY</yposition> |
|
| 386 |
</stemobservation> |
|
| 387 |
<_if> |
|
| 388 |
<cond> |
|
| 389 |
<_eq> |
|
| 390 |
<left><_ref><addr>../../../../_ignore/voucherType</addr></_ref></left> |
|
| 391 |
<right>direct</right> |
|
| 392 |
</_eq> |
|
| 393 |
</cond> |
|
| 394 |
<else> |
|
| 395 |
<aggregateoccurrence_id merge="1"> |
|
| 396 |
<aggregateoccurrence merge="1"> |
|
| 397 |
<taxonoccurrence_id> |
|
| 398 |
<taxonoccurrence> |
|
| 399 |
<voucher> |
|
| 400 |
<specimenreplicate_id> |
|
| 401 |
<specimenreplicate> |
|
| 402 |
<catalognumber_dwc>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/voucher</catalognumber_dwc> |
|
| 403 |
<collectiondate>$/simpleUserdefined[name=collectionDate]/value</collectiondate> |
|
| 404 |
</specimenreplicate> |
|
| 405 |
</specimenreplicate_id> |
|
| 406 |
</voucher> |
|
| 407 |
</taxonoccurrence> |
|
| 408 |
</taxonoccurrence_id> |
|
| 409 |
</aggregateoccurrence> |
|
| 410 |
</aggregateoccurrence_id> |
|
| 411 |
</else> |
|
| 412 |
<then> |
|
| 413 |
<specimenreplicate> |
|
| 414 |
<catalognumber_dwc>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/voucher</catalognumber_dwc> |
|
| 415 |
<collectiondate>$/simpleUserdefined[name=collectionDate]/value</collectiondate> |
|
| 416 |
</specimenreplicate> |
|
| 417 |
</then> |
|
| 418 |
</_if> |
|
| 419 |
<_ignore><voucherType>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/groupType</voucherType></_ignore> |
|
| 420 |
</plantobservation> |
|
| 421 |
</VegBIEN> |
|
| 422 |
Inserted 34 new rows into database |
|
| inputs/CTFS/_1.organisms.disabled/map.csv.disabled | ||
|---|---|---|
| 1 |
CTFS:,VegX:,Comments |
|
| 2 |
/*s/individualOrganismObservation/*ID->/*s/plotObservation/plotUniqueIdentifierID->/*s/plot[plotUniqueIdentifier]/plotName,/*s/plot/plotName, |
|
| 3 |
/*s/individualOrganismObservation/*ID->/*s/plotObservation/plotUniqueIdentifierID->/*s/plot[plotUniqueIdentifier]/plotUniqueIdentifier,/*s/plot/plotUniqueIdentifier, |
|
| 4 |
/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/*/relatedPlot[plotRelationship=Quadrat]/relatedPlotID,, |
|
| 5 |
/*s/individualOrganismObservation/*ID->/*s/plotObservation/simpleUserdefined[name=CensusNumber]/value,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=censusNo]/value, |
|
| 6 |
/*s/individualOrganismObservation/@id,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=sourceAccessionCode]/value, |
|
| 7 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank=Species])/tcs:Name","/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=sp])/tcs:Name", |
|
| 8 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank=Genus])/tcs:Name","/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=gen])/tcs:Name", |
|
| 9 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank=Family])/tcs:Name","/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=fam])/tcs:Name", |
|
| inputs/CTFS/_1.organisms.disabled/map.full.csv.disabled | ||
|---|---|---|
| 1 |
CTFS:,VegX:,Comments |
|
| 2 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank=Family])/tcs:Name","/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=fam])/tcs:Name", |
|
| 3 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank=Genus])/tcs:Name","/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=gen])/tcs:Name", |
|
| 4 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank=Species])/tcs:Name","/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=sp])/tcs:Name", |
|
| 5 |
/*s/individualOrganismObservation/*ID->/*s/plotObservation/simpleUserdefined[name=CensusNumber]/value,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=censusNo]/value, |
|
| 6 |
/*s/individualOrganismObservation/@id,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=sourceAccessionCode]/value, |
|
| 7 |
/*s/individualOrganismObservation/*ID->/*s/plotObservation/plotUniqueIdentifierID->/*s/plot[plotUniqueIdentifier]/plotName,/*s/plot/plotName, |
|
| 8 |
/*s/individualOrganismObservation/*ID->/*s/plotObservation/plotUniqueIdentifierID->/*s/plot[plotUniqueIdentifier]/plotUniqueIdentifier,/*s/plot/plotUniqueIdentifier, |
|
| 9 |
/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/*/relatedPlot[plotRelationship=Quadrat]/relatedPlotID,, |
|
| inputs/CTFS/_1.organisms.disabled/VegBIEN.csv.disabled | ||
|---|---|---|
| 1 |
CTFS:,VegBIEN:/plantobservation,Comments |
|
| 2 |
/*s/individualOrganismObservation/*ID->/*s/plotObservation/plotUniqueIdentifierID->/*s/plot[plotUniqueIdentifier]/plotUniqueIdentifier,/*_id/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/*_id/location/sourceaccessioncode/_merge/2/_alt/1, |
|
| 3 |
/*s/individualOrganismObservation/*ID->/*s/plotObservation/plotUniqueIdentifierID->/*s/plot[plotUniqueIdentifier]/plotName,/*_id/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/*_id/location/sourceaccessioncode/_merge/2/_alt/2, |
|
| 4 |
/*s/individualOrganismObservation/*ID->/*s/plotObservation/plotUniqueIdentifierID->/*s/plot[plotUniqueIdentifier]/plotName,/*_id/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/authorlocationcode, |
|
| 5 |
/*s/individualOrganismObservation/*ID->/*s/plotObservation/plotUniqueIdentifierID->/*s/plot[plotUniqueIdentifier]/plotUniqueIdentifier,/*_id/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/sourceaccessioncode, |
|
| 6 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank=Species])/tcs:Name","/*_id/aggregateoccurrence/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname", |
|
| 7 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank=Genus])/tcs:Name","/*_id/aggregateoccurrence/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname", |
|
| 8 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank=Family])/tcs:Name","/*_id/aggregateoccurrence/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname", |
|
| 9 |
/*s/individualOrganismObservation/*ID->/*s/plotObservation/simpleUserdefined[name=CensusNumber]/value,"/*_id/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue", |
|
| 10 |
/*s/individualOrganismObservation/@id,/*_id:[@merge=1]/aggregateoccurrence:[@merge=1]/*_id:[@merge=1]/taxonoccurrence/sourceaccessioncode/_alt/1,"""{"" sorts it with other _ifs"
|
|
| 11 |
/*s/individualOrganismObservation/@id,/sourceaccessioncode,"""{"" sorts it with other _ifs"
|
|
| 12 |
/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/*/relatedPlot[plotRelationship=Quadrat]/relatedPlotID,,** No input mapping for /*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/*/relatedPlot[plotRelationship=Quadrat]/relatedPlotID ** |
|
| inputs/CTFS/_archive/Organism.VegX/test.xml.ref | ||
|---|---|---|
| 1 |
Put template: |
|
| 2 |
<VegBIEN> |
|
| 3 |
<plantobservation id="-1"> |
|
| 4 |
<aggregateoccurrence_id merge="1"> |
|
| 5 |
<aggregateoccurrence merge="1"> |
|
| 6 |
<taxonoccurrence_id merge="1"> |
|
| 7 |
<taxonoccurrence> |
|
| 8 |
<locationevent_id> |
|
| 9 |
<locationevent> |
|
| 10 |
<location_id> |
|
| 11 |
<location> |
|
| 12 |
<area>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/area</area> |
|
| 13 |
<elevation> |
|
| 14 |
<_alt> |
|
| 15 |
<1>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/verbatimElevation</1> |
|
| 16 |
<2> |
|
| 17 |
<_avg> |
|
| 18 |
<max> |
|
| 19 |
<_units> |
|
| 20 |
<default>m</default> |
|
| 21 |
<to>m</to> |
|
| 22 |
<to></to> |
|
| 23 |
<value><_rangeEnd><value>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/maximumElevationInMeters</value></_rangeEnd></value> |
|
| 24 |
</_units> |
|
| 25 |
</max> |
|
| 26 |
<min> |
|
| 27 |
<_units> |
|
| 28 |
<default>m</default> |
|
| 29 |
<to>m</to> |
|
| 30 |
<to></to> |
|
| 31 |
<value><_rangeStart><value>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/minimumElevationInMeters</value></_rangeStart></value> |
|
| 32 |
</_units> |
|
| 33 |
</min> |
|
| 34 |
</_avg> |
|
| 35 |
</2> |
|
| 36 |
</_alt> |
|
| 37 |
</elevation> |
|
| 38 |
<elevationrange> |
|
| 39 |
<_range> |
|
| 40 |
<from> |
|
| 41 |
<_units> |
|
| 42 |
<default>m</default> |
|
| 43 |
<to>m</to> |
|
| 44 |
<to></to> |
|
| 45 |
<value><_rangeStart><value>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/minimumElevationInMeters</value></_rangeStart></value> |
|
| 46 |
</_units> |
|
| 47 |
</from> |
|
| 48 |
<to> |
|
| 49 |
<_units> |
|
| 50 |
<default>m</default> |
|
| 51 |
<to>m</to> |
|
| 52 |
<to></to> |
|
| 53 |
<value><_rangeEnd><value>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/maximumElevationInMeters</value></_rangeEnd></value> |
|
| 54 |
</_units> |
|
| 55 |
</to> |
|
| 56 |
</_range> |
|
| 57 |
</elevationrange> |
|
| 58 |
<landform>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/landform</landform> |
|
| 59 |
<locationdetermination> |
|
| 60 |
<coordsaccuracy>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/CoordinateUncertaintyInMeters</coordsaccuracy> |
|
| 61 |
<footprintgeometry_dwc>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/FootprintWKT</footprintgeometry_dwc> |
|
| 62 |
<latitude>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/DecimalLatitude</latitude> |
|
| 63 |
<longitude>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/DecimalLongitude</longitude> |
|
| 64 |
<namedplace_id> |
|
| 65 |
<_simplifyPath> |
|
| 66 |
<next>parent_id/namedplace</next> |
|
| 67 |
<require>placename</require> |
|
| 68 |
<path> |
|
| 69 |
<namedplace> |
|
| 70 |
<rank>county</rank> |
|
| 71 |
<placename>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/location[placeType=county]/placeName</placename> |
|
| 72 |
<parent_id> |
|
| 73 |
<namedplace> |
|
| 74 |
<rank>stateProvince</rank> |
|
| 75 |
<placename>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/location[placeType=state]/placeName</placename> |
|
| 76 |
<parent_id> |
|
| 77 |
<namedplace> |
|
| 78 |
<rank>country</rank> |
|
| 79 |
<placename>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/location[placeType=country]/placeName</placename> |
|
| 80 |
<parent_id> |
|
| 81 |
<namedplace> |
|
| 82 |
<rank>continent</rank> |
|
| 83 |
<placename>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/location[placeType=continent]/placeName</placename> |
|
| 84 |
</namedplace> |
|
| 85 |
</parent_id> |
|
| 86 |
</namedplace> |
|
| 87 |
</parent_id> |
|
| 88 |
</namedplace> |
|
| 89 |
</parent_id> |
|
| 90 |
</namedplace> |
|
| 91 |
</path> |
|
| 92 |
</_simplifyPath> |
|
| 93 |
</namedplace_id> |
|
| 94 |
</locationdetermination> |
|
| 95 |
<locationnarrative>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/locationNarrative</locationnarrative> |
|
| 96 |
<notespublic>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/note</notespublic> |
|
| 97 |
<slopeaspect><_compass><value>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/slopeAspect</value></_compass></slopeaspect> |
|
| 98 |
<slopegradient>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/slopeGradient</slopegradient> |
|
| 99 |
<sourceaccessioncode> |
|
| 100 |
<_merge> |
|
| 101 |
<1> |
|
| 102 |
<_alt> |
|
| 103 |
<1>$/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier</1> |
|
| 104 |
<2>$/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotName</2> |
|
| 105 |
</_alt> |
|
| 106 |
</1> |
|
| 107 |
<2> |
|
| 108 |
<_alt> |
|
| 109 |
<1>$/*ID->/*s/plotObservation/plotUniqueIdentifierID->/*s/plot[plotUniqueIdentifier]/plotUniqueIdentifier</1> |
|
| 110 |
<2>$/*ID->/*s/plotObservation/plotUniqueIdentifierID->/*s/plot[plotUniqueIdentifier]/plotName</2> |
|
| 111 |
</_alt> |
|
| 112 |
</2> |
|
| 113 |
</_merge> |
|
| 114 |
</sourceaccessioncode> |
|
| 115 |
</location> |
|
| 116 |
</location_id> |
|
| 117 |
<method_id><method><name>$/*ID->/*s/plotObservation/simpleUserdefined[name=method]/*ID/method/name</name></method></method_id> |
|
| 118 |
<project_id> |
|
| 119 |
<project> |
|
| 120 |
<projectname>$/*ID->/*s/plotObservation/*ID->/*s/project/title[@id=name]</projectname> |
|
| 121 |
<sourceaccessioncode>$/*ID->/*s/plotObservation/*ID->/*s/project/title[@id=sourceAccessionCode]</sourceaccessioncode> |
|
| 122 |
</project> |
|
| 123 |
</project_id> |
|
| 124 |
<authorlocationcode>$/*ID->/*s/plotObservation/plotUniqueIdentifierID->/*s/plot[plotUniqueIdentifier]/plotName</authorlocationcode> |
|
| 125 |
<commclass> |
|
| 126 |
<commdetermination> |
|
| 127 |
<commconcept_id> |
|
| 128 |
<commconcept> |
|
| 129 |
<commname_id><commname><commname>$/*ID->/*s/plotObservation->/*s/communityDetermination[*ID]/*s/communityConcept/commonName</commname></commname></commname_id> |
|
| 130 |
<commdescription>$/*ID->/*s/plotObservation->/*s/communityDetermination[*ID]/*s/communityConcept/name</commdescription> |
|
| 131 |
</commconcept> |
|
| 132 |
</commconcept_id> |
|
| 133 |
</commdetermination> |
|
| 134 |
</commclass> |
|
| 135 |
<obsenddate>$/*ID->/*s/plotObservation/obsEndDate</obsenddate> |
|
| 136 |
<obsstartdate>$/*ID->/*s/plotObservation/obsStartDate</obsstartdate> |
|
| 137 |
<parent_id> |
|
| 138 |
<locationevent> |
|
| 139 |
<location_id> |
|
| 140 |
<location> |
|
| 141 |
<sourceaccessioncode> |
|
| 142 |
<_alt> |
|
| 143 |
<1>$/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier</1> |
|
| 144 |
<2>$/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotName</2> |
|
| 145 |
</_alt> |
|
| 146 |
</sourceaccessioncode> |
|
| 147 |
</location> |
|
| 148 |
</location_id> |
|
| 149 |
<authorlocationcode>$/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotName</authorlocationcode> |
|
| 150 |
<sourceaccessioncode>$/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier</sourceaccessioncode> |
|
| 151 |
</locationevent> |
|
| 152 |
</parent_id> |
|
| 153 |
<precipitation>$/*ID->/*s/plotObservation/simpleUserdefined[name=precipitation]/value</precipitation> |
|
| 154 |
<soilobs> |
|
| 155 |
<acidity>$/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=acidity]/value</acidity> |
|
| 156 |
<basesaturation>$/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=base]/value</basesaturation> |
|
| 157 |
<calcium>$/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=calcium]/value</calcium> |
|
| 158 |
<carbon>$/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=carbon]/value</carbon> |
|
| 159 |
<cationexchangecapacity>$/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=cationExchangeCapacity]/value</cationexchangecapacity> |
|
| 160 |
<clay>$/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=clay]/value</clay> |
|
| 161 |
<conductivity>$/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=conductivity]/value</conductivity> |
|
| 162 |
<magnesium>$/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/magnesium</magnesium> |
|
| 163 |
<nitrogen>$/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/nitrogen</nitrogen> |
|
| 164 |
<organic>$/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=organic]/value</organic> |
|
| 165 |
<ph>$/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/ph</ph> |
|
| 166 |
<phosphorus>$/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/phosphorus</phosphorus> |
|
| 167 |
<potassium>$/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/potassium</potassium> |
|
| 168 |
<sand>$/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=sand]/value</sand> |
|
| 169 |
<silt>$/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=silt]/value</silt> |
|
| 170 |
<sodium>$/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=sodium]/value</sodium> |
|
| 171 |
<texture>$/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=texture]/value</texture> |
|
| 172 |
</soilobs> |
|
| 173 |
<sourceaccessioncode>$/*ID->/*s/plotObservation/plotUniqueIdentifierID->/*s/plot[plotUniqueIdentifier]/plotUniqueIdentifier</sourceaccessioncode> |
|
| 174 |
<temperature>$/*ID->/*s/plotObservation/temperature</temperature> |
|
| 175 |
<waterdepth> |
|
| 176 |
<_avg> |
|
| 177 |
<max> |
|
| 178 |
<_units> |
|
| 179 |
<default>m</default> |
|
| 180 |
<to>m</to> |
|
| 181 |
<to></to> |
|
| 182 |
<value>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/maximumDepthInMeters</value> |
|
| 183 |
</_units> |
|
| 184 |
</max> |
|
| 185 |
<min> |
|
| 186 |
<_units> |
|
| 187 |
<default>m</default> |
|
| 188 |
<to>m</to> |
|
| 189 |
<to></to> |
|
| 190 |
<value>$/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/minimumDepthInMeters</value> |
|
| 191 |
</_units> |
|
| 192 |
</min> |
|
| 193 |
</_avg> |
|
| 194 |
</waterdepth> |
|
| 195 |
</locationevent> |
|
| 196 |
</locationevent_id> |
|
| 197 |
<growthform>$/simpleUserdefined[name=growthForm]/value</growthform> |
|
| 198 |
<sourceaccessioncode> |
|
| 199 |
<_alt> |
|
| 200 |
<3>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=binom])/tcs:Name</3> |
|
| 201 |
<1>$/@id</1> |
|
| 202 |
<2>$/simpleUserdefined[name=authorPlantCode]/value</2> |
|
| 203 |
</_alt> |
|
| 204 |
</sourceaccessioncode> |
|
| 205 |
<taxondetermination> |
|
| 206 |
<role>computer</role> |
|
| 207 |
<plantconcept_id> |
|
| 208 |
<plantconcept> |
|
| 209 |
<plantname_id> |
|
| 210 |
<_simplifyPath> |
|
| 211 |
<next>parent_id/plantname</next> |
|
| 212 |
<require>plantname</require> |
|
| 213 |
<path> |
|
| 214 |
<plantname> |
|
| 215 |
<rank>binomial</rank> |
|
| 216 |
<parent_id> |
|
| 217 |
<plantname> |
|
| 218 |
<rank>authority</rank> |
|
| 219 |
<parent_id> |
|
| 220 |
<plantname> |
|
| 221 |
<rank>subspecies</rank> |
|
| 222 |
<plantname> |
|
| 223 |
<_name> |
|
| 224 |
<first>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=TaxonomicRankBelowSubspeciesEnum])/tcs:Rank</first> |
|
| 225 |
<last>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=TaxonomicRankBelowSubspeciesEnum])/tcs:Name</last> |
|
| 226 |
</_name> |
|
| 227 |
</plantname> |
|
| 228 |
<parent_id> |
|
| 229 |
<plantname> |
|
| 230 |
<rank>species</rank> |
|
| 231 |
<plantname>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=sp])/tcs:Name</plantname> |
|
| 232 |
<parent_id> |
|
| 233 |
<plantname> |
|
| 234 |
<rank>genus</rank> |
|
| 235 |
<plantname>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=gen])/tcs:Name</plantname> |
|
| 236 |
<parent_id> |
|
| 237 |
<plantname> |
|
| 238 |
<rank>family</rank> |
|
| 239 |
<plantname>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=fam])/tcs:Name</plantname> |
|
| 240 |
</plantname> |
|
| 241 |
</parent_id> |
|
| 242 |
</plantname> |
|
| 243 |
</parent_id> |
|
| 244 |
</plantname> |
|
| 245 |
</parent_id> |
|
| 246 |
</plantname> |
|
| 247 |
</parent_id> |
|
| 248 |
<plantname>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=auth])/tcs:Name</plantname> |
|
| 249 |
</plantname> |
|
| 250 |
</parent_id> |
|
| 251 |
</plantname> |
|
| 252 |
</path> |
|
| 253 |
</_simplifyPath> |
|
| 254 |
</plantname_id> |
|
| 255 |
</plantconcept> |
|
| 256 |
</plantconcept_id> |
|
| 257 |
<iscurrent>true</iscurrent> |
|
| 258 |
</taxondetermination> |
|
| 259 |
<taxondetermination> |
|
| 260 |
<role>identifier</role> |
|
| 261 |
<plantconcept_id> |
|
| 262 |
<plantconcept> |
|
| 263 |
<plantname_id> |
|
| 264 |
<_simplifyPath> |
|
| 265 |
<next>parent_id/plantname</next> |
|
| 266 |
<require>plantname</require> |
|
| 267 |
<path> |
|
| 268 |
<plantname> |
|
| 269 |
<rank>binomial</rank> |
|
| 270 |
<plantname> |
|
| 271 |
<_name> |
|
| 272 |
<last>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=binom])/fit</last> |
|
| 273 |
<first>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=binom])/tcs:Name</first> |
|
| 274 |
</_name> |
|
| 275 |
</plantname> |
|
| 276 |
<parent_id> |
|
| 277 |
<plantname> |
|
| 278 |
<rank>authority</rank> |
|
| 279 |
<parent_id> |
|
| 280 |
<plantname> |
|
| 281 |
<rank>subspecies</rank> |
|
| 282 |
<plantname>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=ssp])/tcs:Name</plantname> |
|
| 283 |
<parent_id> |
|
| 284 |
<plantname> |
|
| 285 |
<rank>species</rank> |
|
| 286 |
<plantname>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank=Species])/tcs:Name</plantname> |
|
| 287 |
<parent_id> |
|
| 288 |
<plantname> |
|
| 289 |
<rank>genus</rank> |
|
| 290 |
<plantname>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank=Genus])/tcs:Name</plantname> |
|
| 291 |
<parent_id> |
|
| 292 |
<plantname> |
|
| 293 |
<rank>family</rank> |
|
| 294 |
<plantname>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank=Family])/tcs:Name</plantname> |
|
| 295 |
<parent_id> |
|
| 296 |
<plantname> |
|
| 297 |
<rank>order</rank> |
|
| 298 |
<plantname>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=ord])/tcs:Name</plantname> |
|
| 299 |
<parent_id> |
|
| 300 |
<plantname> |
|
| 301 |
<rank>class</rank> |
|
| 302 |
<plantname>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=cl])/tcs:Name</plantname> |
|
| 303 |
<parent_id> |
|
| 304 |
<plantname> |
|
| 305 |
<rank>subkingdom</rank> |
|
| 306 |
<plantname>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=phyl_div])/tcs:Name</plantname> |
|
| 307 |
<parent_id> |
|
| 308 |
<plantname> |
|
| 309 |
<rank>kingdom</rank> |
|
| 310 |
<plantname>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=reg])/tcs:Name</plantname> |
|
| 311 |
</plantname> |
|
| 312 |
</parent_id> |
|
| 313 |
</plantname> |
|
| 314 |
</parent_id> |
|
| 315 |
</plantname> |
|
| 316 |
</parent_id> |
|
| 317 |
</plantname> |
|
| 318 |
</parent_id> |
|
| 319 |
</plantname> |
|
| 320 |
</parent_id> |
|
| 321 |
</plantname> |
|
| 322 |
</parent_id> |
|
| 323 |
</plantname> |
|
| 324 |
</parent_id> |
|
| 325 |
</plantname> |
|
| 326 |
</parent_id> |
|
| 327 |
<plantname>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=auth])/tcs:Name</plantname> |
|
| 328 |
</plantname> |
|
| 329 |
</parent_id> |
|
| 330 |
</plantname> |
|
| 331 |
</path> |
|
| 332 |
</_simplifyPath> |
|
| 333 |
</plantname_id> |
|
| 334 |
</plantconcept> |
|
| 335 |
</plantconcept_id> |
|
| 336 |
<taxonfit>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=binom])/fit</taxonfit> |
|
| 337 |
<isoriginal>true</isoriginal> |
|
| 338 |
<iscurrent>true</iscurrent> |
|
| 339 |
</taxondetermination> |
|
| 340 |
<verbatimcollectorname> |
|
| 341 |
<_name> |
|
| 342 |
<first>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/givenName</first> |
|
| 343 |
<last>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/surName</last> |
|
| 344 |
</_name> |
|
| 345 |
</verbatimcollectorname> |
|
| 346 |
</taxonoccurrence> |
|
| 347 |
</taxonoccurrence_id> |
|
| 348 |
<count>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/aggregateOrganismObservation[*ID]/*/aggregateValue/value</count> |
|
| 349 |
<cover>$/volumeCanopy/*ID->/*s/attribute/ordinal/coverPercent</cover> |
|
| 350 |
<definedvalue fkey="tablerecord_id"> |
|
| 351 |
<userdefined_id> |
|
| 352 |
<userdefined> |
|
| 353 |
<tablename>aggregateoccurrence</tablename> |
|
| 354 |
<userdefinedname>censusNo</userdefinedname> |
|
| 355 |
</userdefined> |
|
| 356 |
</userdefined_id> |
|
| 357 |
<definedvalue>$/*ID->/*s/plotObservation/simpleUserdefined[name=CensusNumber]/value</definedvalue> |
|
| 358 |
</definedvalue> |
|
| 359 |
<linecover>$/volumeCanopy/value</linecover> |
|
| 360 |
</aggregateoccurrence> |
|
| 361 |
</aggregateoccurrence_id> |
|
| 362 |
<authorplantcode>$/simpleUserdefined[name=authorPlantCode]/value</authorplantcode> |
|
| 363 |
<overallheight> |
|
| 364 |
<_alt> |
|
| 365 |
<0>$/height</0> |
|
| 366 |
<1>$/simpleUserdefined[name=height]/value</1> |
|
| 367 |
</_alt> |
|
| 368 |
</overallheight> |
|
| 369 |
<sourceaccessioncode>$/@id</sourceaccessioncode> |
|
| 370 |
<stemobservation> |
|
| 371 |
<stemtag> |
|
| 372 |
<iscurrent> |
|
| 373 |
<_alt> |
|
| 374 |
<2>true</2> |
|
| 375 |
<1>false</1> |
|
| 376 |
</_alt> |
|
| 377 |
</iscurrent> |
|
| 378 |
<tag>$/*ID->/*s/individualOrganism/identificationLabel[@id=1]</tag> |
|
| 379 |
</stemtag> |
|
| 380 |
<stemtag> |
|
| 381 |
<iscurrent>true</iscurrent> |
|
| 382 |
<tag>$/*ID->/*s/individualOrganism/identificationLabel[@id=2]</tag> |
|
| 383 |
</stemtag> |
|
| 384 |
<xposition>$/relativePlotPosition/relativeX</xposition> |
|
| 385 |
<yposition>$/relativePlotPosition/relativeY</yposition> |
|
| 386 |
</stemobservation> |
|
| 387 |
<_if> |
|
| 388 |
<cond> |
|
| 389 |
<_eq> |
|
| 390 |
<left><_ref><addr>../../../../_ignore/voucherType</addr></_ref></left> |
|
| 391 |
<right>direct</right> |
|
| 392 |
</_eq> |
|
| 393 |
</cond> |
|
| 394 |
<else> |
|
| 395 |
<aggregateoccurrence_id merge="1"> |
|
| 396 |
<aggregateoccurrence merge="1"> |
|
| 397 |
<taxonoccurrence_id> |
|
| 398 |
<taxonoccurrence> |
|
| 399 |
<voucher> |
|
| 400 |
<specimenreplicate_id> |
|
| 401 |
<specimenreplicate> |
|
| 402 |
<catalognumber_dwc>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/voucher</catalognumber_dwc> |
|
| 403 |
<collectiondate>$/simpleUserdefined[name=collectionDate]/value</collectiondate> |
|
| 404 |
</specimenreplicate> |
|
| 405 |
</specimenreplicate_id> |
|
| 406 |
</voucher> |
|
| 407 |
</taxonoccurrence> |
|
| 408 |
</taxonoccurrence_id> |
|
| 409 |
</aggregateoccurrence> |
|
| 410 |
</aggregateoccurrence_id> |
|
| 411 |
</else> |
|
| 412 |
<then> |
|
| 413 |
<specimenreplicate> |
|
| 414 |
<catalognumber_dwc>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/voucher</catalognumber_dwc> |
|
| 415 |
<collectiondate>$/simpleUserdefined[name=collectionDate]/value</collectiondate> |
|
| 416 |
</specimenreplicate> |
|
| 417 |
</then> |
|
| 418 |
</_if> |
|
| 419 |
<_ignore><voucherType>$/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/groupType</voucherType></_ignore> |
|
| 420 |
</plantobservation> |
|
| 421 |
</VegBIEN> |
|
| 422 |
Inserted 34 new rows into database |
|
| inputs/CTFS/_archive/Organism.VegX/VegBIEN.csv.disabled | ||
|---|---|---|
| 1 |
CTFS:,VegBIEN:/plantobservation,Comments |
|
| 2 |
/*s/individualOrganismObservation/*ID->/*s/plotObservation/plotUniqueIdentifierID->/*s/plot[plotUniqueIdentifier]/plotUniqueIdentifier,/*_id/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/*_id/location/sourceaccessioncode/_merge/2/_alt/1, |
|
| 3 |
/*s/individualOrganismObservation/*ID->/*s/plotObservation/plotUniqueIdentifierID->/*s/plot[plotUniqueIdentifier]/plotName,/*_id/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/*_id/location/sourceaccessioncode/_merge/2/_alt/2, |
|
| 4 |
/*s/individualOrganismObservation/*ID->/*s/plotObservation/plotUniqueIdentifierID->/*s/plot[plotUniqueIdentifier]/plotName,/*_id/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/authorlocationcode, |
|
| 5 |
/*s/individualOrganismObservation/*ID->/*s/plotObservation/plotUniqueIdentifierID->/*s/plot[plotUniqueIdentifier]/plotUniqueIdentifier,/*_id/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/sourceaccessioncode, |
|
| 6 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank=Species])/tcs:Name","/*_id/aggregateoccurrence/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname", |
|
| 7 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank=Genus])/tcs:Name","/*_id/aggregateoccurrence/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname", |
|
| 8 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank=Family])/tcs:Name","/*_id/aggregateoccurrence/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname", |
|
| 9 |
/*s/individualOrganismObservation/*ID->/*s/plotObservation/simpleUserdefined[name=CensusNumber]/value,"/*_id/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue", |
|
| 10 |
/*s/individualOrganismObservation/@id,/*_id:[@merge=1]/aggregateoccurrence:[@merge=1]/*_id:[@merge=1]/taxonoccurrence/sourceaccessioncode/_alt/1,"""{"" sorts it with other _ifs"
|
|
| 11 |
/*s/individualOrganismObservation/@id,/sourceaccessioncode,"""{"" sorts it with other _ifs"
|
|
| 12 |
/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/*/relatedPlot[plotRelationship=Quadrat]/relatedPlotID,,** No input mapping for /*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/*/relatedPlot[plotRelationship=Quadrat]/relatedPlotID ** |
|
| inputs/CTFS/_archive/Organism.VegX/map.csv.disabled | ||
|---|---|---|
| 1 |
CTFS:,VegX:,Comments |
|
| 2 |
/*s/individualOrganismObservation/*ID->/*s/plotObservation/plotUniqueIdentifierID->/*s/plot[plotUniqueIdentifier]/plotName,/*s/plot/plotName, |
|
| 3 |
/*s/individualOrganismObservation/*ID->/*s/plotObservation/plotUniqueIdentifierID->/*s/plot[plotUniqueIdentifier]/plotUniqueIdentifier,/*s/plot/plotUniqueIdentifier, |
|
| 4 |
/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/*/relatedPlot[plotRelationship=Quadrat]/relatedPlotID,, |
|
| 5 |
/*s/individualOrganismObservation/*ID->/*s/plotObservation/simpleUserdefined[name=CensusNumber]/value,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=censusNo]/value, |
|
| 6 |
/*s/individualOrganismObservation/@id,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=sourceAccessionCode]/value, |
|
| 7 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank=Species])/tcs:Name","/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=sp])/tcs:Name", |
|
| 8 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank=Genus])/tcs:Name","/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=gen])/tcs:Name", |
|
| 9 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank=Family])/tcs:Name","/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=fam])/tcs:Name", |
|
| inputs/CTFS/_archive/Organism.VegX/map.full.csv.disabled | ||
|---|---|---|
| 1 |
CTFS:,VegX:,Comments |
|
| 2 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank=Family])/tcs:Name","/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=fam])/tcs:Name", |
|
| 3 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank=Genus])/tcs:Name","/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=gen])/tcs:Name", |
|
| 4 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank=Species])/tcs:Name","/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=sp])/tcs:Name", |
|
| 5 |
/*s/individualOrganismObservation/*ID->/*s/plotObservation/simpleUserdefined[name=CensusNumber]/value,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=censusNo]/value, |
|
| 6 |
/*s/individualOrganismObservation/@id,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=sourceAccessionCode]/value, |
|
| 7 |
/*s/individualOrganismObservation/*ID->/*s/plotObservation/plotUniqueIdentifierID->/*s/plot[plotUniqueIdentifier]/plotName,/*s/plot/plotName, |
|
| 8 |
/*s/individualOrganismObservation/*ID->/*s/plotObservation/plotUniqueIdentifierID->/*s/plot[plotUniqueIdentifier]/plotUniqueIdentifier,/*s/plot/plotUniqueIdentifier, |
|
| 9 |
/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/*/relatedPlot[plotRelationship=Quadrat]/relatedPlotID,, |
|
Also available in: Unified diff
inputs/CTFS/: Moved VegX export subdir to _archive and renamed it to remove ".disabled" suffix and have a VegCSV-like name