Revision 4327
Added by Aaron Marcuse-Kubitza about 12 years ago
| inputs/MT/specimens/VegBIEN.csv | ||
|---|---|---|
| 1 | 1 |
MT[Veg+],VegBIEN:,Comments |
| 2 | 2 |
id,/location/authorlocationcode/_alt/3, |
| 3 |
institutionCode,/location/authorlocationcode/_alt/4/_merge/1,
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| 4 |
collectionCode,/location/authorlocationcode/_alt/4/_merge/2/_merge/1,
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| 5 |
collectionID,/location/authorlocationcode/_alt/4/_merge/2/_merge/2,
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| 3 |
institutionCode,/location/authorlocationcode/_alt/4/_join/1,
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| 4 |
collectionCode,/location/authorlocationcode/_alt/4/_join/2/_join/1,
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| 5 |
collectionID,/location/authorlocationcode/_alt/4/_join/2/_join/2,
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| 6 | 6 |
continent,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename", |
| 7 | 7 |
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
| 8 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
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| 9 |
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/2,
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| 8 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
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| 9 |
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/2,
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| 10 | 10 |
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 11 | 11 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 12 | 12 |
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value", |
| inputs/MT/specimens/test.xml.ref | ||
|---|---|---|
| 5 | 5 |
<_alt> |
| 6 | 6 |
<3>$id</3> |
| 7 | 7 |
<4> |
| 8 |
<_merge>
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|
| 8 |
<_join>
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|
| 9 | 9 |
<1>$institutionCode</1> |
| 10 | 10 |
<2> |
| 11 |
<_merge>
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|
| 11 |
<_join>
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|
| 12 | 12 |
<1>$collectionCode</1> |
| 13 | 13 |
<2>$collectionID</2> |
| 14 |
</_merge>
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| 14 |
</_join>
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| 15 | 15 |
</2> |
| 16 |
</_merge>
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| 16 |
</_join>
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| 17 | 17 |
</4> |
| 18 | 18 |
</_alt> |
| 19 | 19 |
</authorlocationcode> |
| ... | ... | |
| 53 | 53 |
<plantobservation> |
| 54 | 54 |
<specimenreplicate> |
| 55 | 55 |
<collectioncode_dwc> |
| 56 |
<_merge>
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|
| 56 |
<_join>
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|
| 57 | 57 |
<1>$collectionCode</1> |
| 58 | 58 |
<2>$collectionID</2> |
| 59 |
</_merge>
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|
| 59 |
</_join>
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| 60 | 60 |
</collectioncode_dwc> |
| 61 | 61 |
<institution_id><party><organizationname>$institutionCode</organizationname></party></institution_id> |
| 62 | 62 |
<sourceaccessioncode>$id</sourceaccessioncode> |
| inputs/XAL/specimens/VegBIEN.csv | ||
|---|---|---|
| 1 | 1 |
"XAL[Veg+,darwin:]:/content/record/",VegBIEN:,Comments |
| 2 |
InstitutionCode,/location/authorlocationcode/_alt/4/_merge/1,
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| 3 |
CollectionCode,/location/authorlocationcode/_alt/4/_merge/2/_merge/1,
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| 4 |
CatalogNumber,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/else",
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| 2 |
InstitutionCode,/location/authorlocationcode/_alt/4/_join/1,
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| 3 |
CollectionCode,/location/authorlocationcode/_alt/4/_join/2/_join/1,
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| 4 |
CatalogNumber,"/location/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else",
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| 5 | 5 |
MaximumElevation,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
| 6 | 6 |
MinimumElevation,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value", |
| 7 | 7 |
MinimumElevation,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value", |
| ... | ... | |
| 29 | 29 |
FieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/2,"This historical DwC term (http://rs.tdwg.org/dwc/terms/history/index.htm#fieldNumber-2009-04-24) has close to the same meaning as recordNumber (http://rs.tdwg.org/dwc/terms/#recordNumber). It is also unused: `grep -F ""<darwin:FieldNumber>"" inputs/XAL/src/digir.specimens.xml` returns no lines." |
| 30 | 30 |
Sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
| 31 | 31 |
CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
| 32 |
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
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| 32 |
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
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| 33 | 33 |
InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 34 | 34 |
CollectorNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/1, |
| 35 | 35 |
FieldNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/2,"This historical DwC term (http://rs.tdwg.org/dwc/terms/history/index.htm#fieldNumber-2009-04-24) has close to the same meaning as recordNumber (http://rs.tdwg.org/dwc/terms/#recordNumber). It is also unused: `grep -F ""<darwin:FieldNumber>"" inputs/XAL/src/digir.specimens.xml` returns no lines." |
| inputs/NY/specimens/VegBIEN.csv | ||
|---|---|---|
| 1 | 1 |
NY[Veg+],VegBIEN:,Comments |
| 2 | 2 |
UniqueNYInternalRecordNumber,/location/authorlocationcode/_alt/3, |
| 3 |
InstitutionCode,/location/authorlocationcode/_alt/4/_merge/1,
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| 4 |
CollectionCode,/location/authorlocationcode/_alt/4/_merge/2/_merge/1,
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| 5 |
CatalogNumber,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/else",
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| 3 |
InstitutionCode,/location/authorlocationcode/_alt/4/_join/1,
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| 4 |
CollectionCode,/location/authorlocationcode/_alt/4/_join/2/_join/1,
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| 5 |
CatalogNumber,"/location/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else",
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| 6 | 6 |
MaximumElevation,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
| 7 | 7 |
MinimumElevation,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value/_nullIf:[null=.]/value", |
| 8 | 8 |
MinimumElevation,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value/_nullIf:[null=.]/value", |
| ... | ... | |
| 32 | 32 |
FieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/2,Usage inconsistent with DwC definition |
| 33 | 33 |
Sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
| 34 | 34 |
CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
| 35 |
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
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| 35 |
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
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| 36 | 36 |
InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 37 | 37 |
UniqueNYInternalRecordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 38 | 38 |
CollectorNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/1, |
| inputs/NY/specimens/test.xml.ref | ||
|---|---|---|
| 5 | 5 |
<_alt> |
| 6 | 6 |
<3>$UniqueNYInternalRecordNumber</3> |
| 7 | 7 |
<4> |
| 8 |
<_merge>
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| 8 |
<_join>
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| 9 | 9 |
<1>$InstitutionCode</1> |
| 10 | 10 |
<2>$CollectionCode</2> |
| 11 | 11 |
<3>$CatalogNumber</3> |
| 12 |
</_merge>
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| 12 |
</_join>
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| 13 | 13 |
</4> |
| 14 | 14 |
</_alt> |
| 15 | 15 |
</authorlocationcode> |
| inputs/UNCC/specimens/VegBIEN.csv | ||
|---|---|---|
| 1 | 1 |
UNCC[Veg+],VegBIEN:,Comments |
| 2 | 2 |
accession,/location/authorlocationcode/_alt/3, |
| 3 |
herbarium,/location/authorlocationcode/_alt/4/_merge/1,
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| 3 |
herbarium,/location/authorlocationcode/_alt/4/_join/1,
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| 4 | 4 |
county,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename", |
| 5 | 5 |
state,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename", |
| 6 | 6 |
country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename", |
| inputs/ACAD/specimens/VegBIEN.csv | ||
|---|---|---|
| 1 | 1 |
ACAD[Veg+],VegBIEN:,Comments |
| 2 | 2 |
id,/location/authorlocationcode/_alt/3, |
| 3 |
institutionCode,/location/authorlocationcode/_alt/4/_merge/1,
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| 4 |
collectionCode,/location/authorlocationcode/_alt/4/_merge/2/_merge/1,
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| 5 |
collectionID,/location/authorlocationcode/_alt/4/_merge/2/_merge/2,
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| 6 |
catalogNumber,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/else",
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| 3 |
institutionCode,/location/authorlocationcode/_alt/4/_join/1,
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| 4 |
collectionCode,/location/authorlocationcode/_alt/4/_join/2/_join/1,
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| 5 |
collectionID,/location/authorlocationcode/_alt/4/_join/2/_join/2,
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| 6 |
catalogNumber,"/location/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else",
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| 7 | 7 |
verbatimElevation,"/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value", |
| 8 | 8 |
decimalLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value", |
| 9 | 9 |
decimalLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value", |
| ... | ... | |
| 15 | 15 |
eventDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1, |
| 16 | 16 |
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/2, |
| 17 | 17 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
| 18 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
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| 19 |
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/2,
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| 18 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
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| 19 |
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/2,
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| 20 | 20 |
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 21 | 21 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 22 | 22 |
recordNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/2, |
| inputs/ACAD/specimens/test.xml.ref | ||
|---|---|---|
| 5 | 5 |
<_alt> |
| 6 | 6 |
<3>$id</3> |
| 7 | 7 |
<4> |
| 8 |
<_merge>
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| 8 |
<_join>
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| 9 | 9 |
<1>$institutionCode</1> |
| 10 | 10 |
<2> |
| 11 |
<_merge>
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| 11 |
<_join>
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| 12 | 12 |
<1>$collectionCode</1> |
| 13 | 13 |
<2>$collectionID</2> |
| 14 |
</_merge>
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| 14 |
</_join>
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| 15 | 15 |
</2> |
| 16 | 16 |
<3>$catalogNumber</3> |
| 17 |
</_merge>
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| 17 |
</_join>
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| 18 | 18 |
</4> |
| 19 | 19 |
</_alt> |
| 20 | 20 |
</authorlocationcode> |
| ... | ... | |
| 80 | 80 |
<specimenreplicate> |
| 81 | 81 |
<catalognumber_dwc>$catalogNumber</catalognumber_dwc> |
| 82 | 82 |
<collectioncode_dwc> |
| 83 |
<_merge>
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| 83 |
<_join>
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| 84 | 84 |
<1>$collectionCode</1> |
| 85 | 85 |
<2>$collectionID</2> |
| 86 |
</_merge>
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| 86 |
</_join>
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| 87 | 87 |
</collectioncode_dwc> |
| 88 | 88 |
<institution_id><party><organizationname>$institutionCode</organizationname></party></institution_id> |
| 89 | 89 |
<sourceaccessioncode>$id</sourceaccessioncode> |
| inputs/SALVIAS-CSV/1.organisms/VegBIEN.csv | ||
|---|---|---|
| 7 | 7 |
subplot,"/location/authorlocationcode/_alt/1/_if[@name=""if subplot""]/cond/_exists", |
| 8 | 8 |
plot_code,"/location/authorlocationcode/_alt/1/_if[@name=""if subplot""]/else", |
| 9 | 9 |
PLOT_ID,"/location/authorlocationcode/_alt/2/_if[@name=""if locationID""]/cond/_exists", |
| 10 |
det_type,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
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| 11 |
coll_number,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/else/_alt/1",Brad: Map instead as for voucher_string
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| 12 |
voucher_string,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/else/_alt/2","Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
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| 10 |
det_type,"/location/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
|
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| 11 |
coll_number,"/location/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else/_alt/1",Brad: Map instead as for voucher_string
|
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| 12 |
voucher_string,"/location/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else/_alt/2","Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
|
|
| 13 | 13 |
census_date,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value,"This is for the subplot, not the organism, as all organisms in a subplot have the same value for it. The following query returns no rows: |
| 14 | 14 |
----- |
| 15 | 15 |
SELECT ""PLOT_ID"", subplot, count(DISTINCT census_date) AS census_date_count |
| inputs/REMIB/specimens/VegBIEN.csv | ||
|---|---|---|
| 1 | 1 |
REMIB[Veg+],VegBIEN:,Comments |
| 2 | 2 |
accession_number,/location/authorlocationcode/_alt/3, |
| 3 |
acronym,/location/authorlocationcode/_alt/4/_merge/2/_merge/1,
|
|
| 3 |
acronym,/location/authorlocationcode/_alt/4/_join/2/_join/1,
|
|
| 4 | 4 |
lat_deg,"/location/locationdetermination/latitude/_alt/2/_nullIf:[null=0,type=float]/value", |
| 5 | 5 |
long_deg,"/location/locationdetermination/longitude/_alt/2/_nullIf:[null=0,type=float]/value", |
| 6 | 6 |
county,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename", |
| ... | ... | |
| 15 | 15 |
coll_day,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
| 16 | 16 |
coll_month,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
| 17 | 17 |
coll_year,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
| 18 |
acronym,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
|
|
| 18 |
acronym,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
|
|
| 19 | 19 |
accession_number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 20 | 20 |
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_simplifyPath:[next=parent_id]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname", |
| 21 | 21 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_simplifyPath:[next=parent_id]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname", |
| inputs/SALVIAS/1.organisms/VegBIEN.csv | ||
|---|---|---|
| 7 | 7 |
Line,"/location/authorlocationcode/_alt/1/_if[@name=""if subplot""]/cond/_exists", |
| 8 | 8 |
PlotCode,"/location/authorlocationcode/_alt/1/_if[@name=""if subplot""]/else", |
| 9 | 9 |
PlotID,"/location/authorlocationcode/_alt/2/_if[@name=""if locationID""]/cond/_exists", |
| 10 |
DetType,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
|
|
| 11 |
coll_number,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/else/_alt/1",Brad: Map instead as for voucher_string
|
|
| 12 |
SourceVoucher,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/else/_alt/2","Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
|
|
| 10 |
DetType,"/location/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
|
|
| 11 |
coll_number,"/location/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else/_alt/1",Brad: Map instead as for voucher_string
|
|
| 12 |
SourceVoucher,"/location/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else/_alt/2","Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
|
|
| 13 | 13 |
census_date,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1,"This is for the subplot, not the organism, as all organisms in a subplot have the same value for it. The following query returns no rows: |
| 14 | 14 |
----- |
| 15 | 15 |
SELECT ""PlotID"", ""Line"", count(DISTINCT census_date) AS census_date_count |
| inputs/U/specimens/VegBIEN.csv | ||
|---|---|---|
| 1 | 1 |
U[Veg+],VegBIEN:,Comments |
| 2 | 2 |
ID,/location/authorlocationcode/_alt/3, |
| 3 |
Barcode,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/else",
|
|
| 3 |
Barcode,"/location/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else",
|
|
| 4 | 4 |
Lat,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value", |
| 5 | 5 |
Long,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value", |
| 6 | 6 |
Country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename", |
| inputs/ARIZ/specimens/VegBIEN.csv | ||
|---|---|---|
| 1 | 1 |
ARIZ[Veg+],VegBIEN:,Comments |
| 2 | 2 |
GlobalUniqueIdentifier,/location/authorlocationcode/_alt/3, |
| 3 |
InstitutionCode,/location/authorlocationcode/_alt/4/_merge/1,
|
|
| 4 |
CollectionCode,/location/authorlocationcode/_alt/4/_merge/2/_merge/1,
|
|
| 5 |
CatalogNumberNumeric,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/else/_alt/1",
|
|
| 6 |
CatalogNumber,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/else/_alt/2",Don't overwrite CatalogNumberNumeric
|
|
| 3 |
InstitutionCode,/location/authorlocationcode/_alt/4/_join/1,
|
|
| 4 |
CollectionCode,/location/authorlocationcode/_alt/4/_join/2/_join/1,
|
|
| 5 |
CatalogNumberNumeric,"/location/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else/_alt/1",
|
|
| 6 |
CatalogNumber,"/location/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else/_alt/2",Don't overwrite CatalogNumberNumeric
|
|
| 7 | 7 |
VerbatimElevation,"/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value", |
| 8 | 8 |
MaximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
| 9 | 9 |
MinimumElevationInMeters,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value", |
| ... | ... | |
| 39 | 39 |
Sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
| 40 | 40 |
CatalogNumberNumeric,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else/_alt/1", |
| 41 | 41 |
CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else/_alt/2",Don't overwrite CatalogNumberNumeric |
| 42 |
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
|
|
| 42 |
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
|
|
| 43 | 43 |
InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 44 | 44 |
GlobalUniqueIdentifier,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 45 | 45 |
CollectorNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/1, |
| inputs/ARIZ/specimens/test.xml.ref | ||
|---|---|---|
| 5 | 5 |
<_alt> |
| 6 | 6 |
<3>$GlobalUniqueIdentifier</3> |
| 7 | 7 |
<4> |
| 8 |
<_merge>
|
|
| 8 |
<_join>
|
|
| 9 | 9 |
<1>$InstitutionCode</1> |
| 10 | 10 |
<2>$CollectionCode</2> |
| 11 | 11 |
<3> |
| ... | ... | |
| 14 | 14 |
<2>$CatalogNumber</2> |
| 15 | 15 |
</_alt> |
| 16 | 16 |
</3> |
| 17 |
</_merge>
|
|
| 17 |
</_join>
|
|
| 18 | 18 |
</4> |
| 19 | 19 |
</_alt> |
| 20 | 20 |
</authorlocationcode> |
| inputs/GBIF/specimens/VegBIEN.csv | ||
|---|---|---|
| 1 | 1 |
GBIF[Veg+],VegBIEN:,Comments |
| 2 |
InstitutionCD,/location/authorlocationcode/_alt/4/_merge/1,
|
|
| 3 |
CollectionCD,/location/authorlocationcode/_alt/4/_merge/2/_merge/1,
|
|
| 4 |
CatalogNO,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/else",
|
|
| 2 |
InstitutionCD,/location/authorlocationcode/_alt/4/_join/1,
|
|
| 3 |
CollectionCD,/location/authorlocationcode/_alt/4/_join/2/_join/1,
|
|
| 4 |
CatalogNO,"/location/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else",
|
|
| 5 | 5 |
MaximumElevationInMeter,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
| 6 | 6 |
MinimumElevationInMeter,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value", |
| 7 | 7 |
MinimumElevationInMeter,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value", |
| ... | ... | |
| 18 | 18 |
LatestDateCollected,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/2, |
| 19 | 19 |
LatestDateCollected,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/2, |
| 20 | 20 |
CatalogNO,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
| 21 |
CollectionCD,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
|
|
| 21 |
CollectionCD,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
|
|
| 22 | 22 |
InstitutionCD,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 23 | 23 |
ScientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2, |
| 24 | 24 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first, |
| inputs/GBIF/specimens/test.xml.ref | ||
|---|---|---|
| 2 | 2 |
<VegBIEN> |
| 3 | 3 |
<location id="-1"> |
| 4 | 4 |
<authorlocationcode> |
| 5 |
<_merge>
|
|
| 5 |
<_join>
|
|
| 6 | 6 |
<1>$InstitutionCD</1> |
| 7 | 7 |
<2>$CollectionCD</2> |
| 8 | 8 |
<3>$CatalogNO</3> |
| 9 |
</_merge>
|
|
| 9 |
</_join>
|
|
| 10 | 10 |
</authorlocationcode> |
| 11 | 11 |
<elevation> |
| 12 | 12 |
<_avg> |
| inputs/NCU-NCSC/specimens/VegBIEN.csv | ||
|---|---|---|
| 1 | 1 |
NCU-NCSC[Veg+],VegBIEN:,Comments |
| 2 | 2 |
Accession Number,/location/authorlocationcode/_alt/3, |
| 3 |
SeriesName,/location/authorlocationcode/_alt/4/_merge/2/_merge/1,
|
|
| 4 |
Barcode,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/else",
|
|
| 3 |
SeriesName,/location/authorlocationcode/_alt/4/_join/2/_join/1,
|
|
| 4 |
Barcode,"/location/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else",
|
|
| 5 | 5 |
Elevation,"/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value", |
| 6 | 6 |
Accuracy,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1, |
| 7 | 7 |
Lat (-=S),"/location/locationdetermination/latitude/_alt/2/_nullIf:[null=0,type=float]/value/_replace:[""\?$""=]/value", |
| ... | ... | |
| 13 | 13 |
Collect Date,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/3, |
| 14 | 14 |
Collect Date,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/3, |
| 15 | 15 |
Barcode,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
| 16 |
SeriesName,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
|
|
| 16 |
SeriesName,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
|
|
| 17 | 17 |
Accession Number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 18 | 18 |
Full Taxon Name,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2, |
| 19 | 19 |
Cultivated?,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value/_map:[Yes=cultivated,No=wild]/value", |
| inputs/NCU-NCSC/specimens/test.xml.ref | ||
|---|---|---|
| 5 | 5 |
<_alt> |
| 6 | 6 |
<3>$Accession Number</3> |
| 7 | 7 |
<4> |
| 8 |
<_merge>
|
|
| 8 |
<_join>
|
|
| 9 | 9 |
<2>$SeriesName</2> |
| 10 | 10 |
<3>$Barcode</3> |
| 11 |
</_merge>
|
|
| 11 |
</_join>
|
|
| 12 | 12 |
</4> |
| 13 | 13 |
</_alt> |
| 14 | 14 |
</authorlocationcode> |
| inputs/SpeciesLink/specimens/VegBIEN.csv | ||
|---|---|---|
| 1 | 1 |
"SpeciesLink[Veg+,dwc_dwcore_,dwc_curatorial_,dwc_geospatial_,http__purl_org_,dwc_terms_,conceptual_darwin_2003_1_0_]",VegBIEN:,Comments |
| 2 | 2 |
GlobalUniqueIdentifier,/location/authorlocationcode/_alt/3, |
| 3 |
InstitutionCode,/location/authorlocationcode/_alt/4/_merge/1,
|
|
| 4 |
institutionCode,/location/authorlocationcode/_alt/4/_merge/1,
|
|
| 5 |
CollectionCode,/location/authorlocationcode/_alt/4/_merge/2/_merge/1,
|
|
| 6 |
collectionCode,/location/authorlocationcode/_alt/4/_merge/2/_merge/1,
|
|
| 7 |
collectionID,/location/authorlocationcode/_alt/4/_merge/2/_merge/2,
|
|
| 8 |
CatalogNumber,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/else",
|
|
| 9 |
catalogNumber,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/else",
|
|
| 3 |
InstitutionCode,/location/authorlocationcode/_alt/4/_join/1,
|
|
| 4 |
institutionCode,/location/authorlocationcode/_alt/4/_join/1,
|
|
| 5 |
CollectionCode,/location/authorlocationcode/_alt/4/_join/2/_join/1,
|
|
| 6 |
collectionCode,/location/authorlocationcode/_alt/4/_join/2/_join/1,
|
|
| 7 |
collectionID,/location/authorlocationcode/_alt/4/_join/2/_join/2,
|
|
| 8 |
CatalogNumber,"/location/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else",
|
|
| 9 |
catalogNumber,"/location/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else",
|
|
| 10 | 10 |
MaximumElevation,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
| 11 | 11 |
MaximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
| 12 | 12 |
maximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
| ... | ... | |
| 72 | 72 |
sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
| 73 | 73 |
CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
| 74 | 74 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
| 75 |
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
|
|
| 76 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
|
|
| 77 |
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/2,
|
|
| 75 |
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
|
|
| 76 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
|
|
| 77 |
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/2,
|
|
| 78 | 78 |
InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 79 | 79 |
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 80 | 80 |
GlobalUniqueIdentifier,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| inputs/SpeciesLink/specimens/test.xml.ref | ||
|---|---|---|
| 5 | 5 |
<_alt> |
| 6 | 6 |
<3>$dwc_dwcore_GlobalUniqueIdentifier</3> |
| 7 | 7 |
<4> |
| 8 |
<_merge>
|
|
| 8 |
<_join>
|
|
| 9 | 9 |
<1> |
| 10 | 10 |
<_alt> |
| 11 | 11 |
<0>$dwc_dwcore_InstitutionCode</0> |
| ... | ... | |
| 14 | 14 |
</_alt> |
| 15 | 15 |
</1> |
| 16 | 16 |
<2> |
| 17 |
<_merge>
|
|
| 17 |
<_join>
|
|
| 18 | 18 |
<1> |
| 19 | 19 |
<_alt> |
| 20 | 20 |
<0>$dwc_dwcore_CollectionCode</0> |
| ... | ... | |
| 23 | 23 |
</_alt> |
| 24 | 24 |
</1> |
| 25 | 25 |
<2>$dwc_terms_collectionID</2> |
| 26 |
</_merge>
|
|
| 26 |
</_join>
|
|
| 27 | 27 |
</2> |
| 28 | 28 |
<3> |
| 29 | 29 |
<_alt> |
| ... | ... | |
| 32 | 32 |
<2>$dwc_terms_catalogNumber</2> |
| 33 | 33 |
</_alt> |
| 34 | 34 |
</3> |
| 35 |
</_merge>
|
|
| 35 |
</_join>
|
|
| 36 | 36 |
</4> |
| 37 | 37 |
</_alt> |
| 38 | 38 |
</authorlocationcode> |
| ... | ... | |
| 422 | 422 |
</_alt> |
| 423 | 423 |
</catalognumber_dwc> |
| 424 | 424 |
<collectioncode_dwc> |
| 425 |
<_merge>
|
|
| 425 |
<_join>
|
|
| 426 | 426 |
<1> |
| 427 | 427 |
<_alt> |
| 428 | 428 |
<0>$dwc_dwcore_CollectionCode</0> |
| ... | ... | |
| 431 | 431 |
</_alt> |
| 432 | 432 |
</1> |
| 433 | 433 |
<2>$dwc_terms_collectionID</2> |
| 434 |
</_merge>
|
|
| 434 |
</_join>
|
|
| 435 | 435 |
</collectioncode_dwc> |
| 436 | 436 |
<institution_id> |
| 437 | 437 |
<party> |
| inputs/MO/specimens/VegBIEN.csv | ||
|---|---|---|
| 1 | 1 |
MO[Veg+],VegBIEN:,Comments |
| 2 |
InstitutionCode,/location/authorlocationcode/_alt/4/_merge/1,
|
|
| 3 |
CollectionCode,/location/authorlocationcode/_alt/4/_merge/2/_merge/1,
|
|
| 4 |
CatalogNumber,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/else",
|
|
| 2 |
InstitutionCode,/location/authorlocationcode/_alt/4/_join/1,
|
|
| 3 |
CollectionCode,/location/authorlocationcode/_alt/4/_join/2/_join/1,
|
|
| 4 |
CatalogNumber,"/location/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else",
|
|
| 5 | 5 |
MaximumElevation,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
| 6 | 6 |
MinimumElevation,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value", |
| 7 | 7 |
MinimumElevation,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value", |
| ... | ... | |
| 27 | 27 |
notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
| 28 | 28 |
CollectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/1, |
| 29 | 29 |
CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
| 30 |
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
|
|
| 30 |
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
|
|
| 31 | 31 |
InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 32 | 32 |
CollectorNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/1, |
| 33 | 33 |
ScientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2, |
| inputs/MO/specimens/test.xml.ref | ||
|---|---|---|
| 2 | 2 |
<VegBIEN> |
| 3 | 3 |
<location id="-1"> |
| 4 | 4 |
<authorlocationcode> |
| 5 |
<_merge>
|
|
| 5 |
<_join>
|
|
| 6 | 6 |
<1>$InstitutionCode</1> |
| 7 | 7 |
<2>$CollectionCode</2> |
| 8 | 8 |
<3>$CatalogNumber</3> |
| 9 |
</_merge>
|
|
| 9 |
</_join>
|
|
| 10 | 10 |
</authorlocationcode> |
| 11 | 11 |
<elevation> |
| 12 | 12 |
<_avg> |
| inputs/QMOR/specimens/VegBIEN.csv | ||
|---|---|---|
| 1 | 1 |
QMOR[Veg+],VegBIEN:,Comments |
| 2 | 2 |
id,/location/authorlocationcode/_alt/3, |
| 3 |
institutionCode,/location/authorlocationcode/_alt/4/_merge/1,
|
|
| 4 |
collectionCode,/location/authorlocationcode/_alt/4/_merge/2/_merge/1,
|
|
| 5 |
collectionID,/location/authorlocationcode/_alt/4/_merge/2/_merge/2,
|
|
| 6 |
catalogNumber,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/else",
|
|
| 3 |
institutionCode,/location/authorlocationcode/_alt/4/_join/1,
|
|
| 4 |
collectionCode,/location/authorlocationcode/_alt/4/_join/2/_join/1,
|
|
| 5 |
collectionID,/location/authorlocationcode/_alt/4/_join/2/_join/2,
|
|
| 6 |
catalogNumber,"/location/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else",
|
|
| 7 | 7 |
verbatimElevation,"/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value", |
| 8 | 8 |
maximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
| 9 | 9 |
minimumElevationInMeters,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value", |
| ... | ... | |
| 26 | 26 |
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
| 27 | 27 |
sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
| 28 | 28 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
| 29 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
|
|
| 30 |
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/2,
|
|
| 29 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
|
|
| 30 |
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/2,
|
|
| 31 | 31 |
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 32 | 32 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 33 | 33 |
scientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2, |
| inputs/QMOR/specimens/test.xml.ref | ||
|---|---|---|
| 5 | 5 |
<_alt> |
| 6 | 6 |
<3>$id</3> |
| 7 | 7 |
<4> |
| 8 |
<_merge>
|
|
| 8 |
<_join>
|
|
| 9 | 9 |
<1>$institutionCode</1> |
| 10 | 10 |
<2> |
| 11 |
<_merge>
|
|
| 11 |
<_join>
|
|
| 12 | 12 |
<1>$collectionCode</1> |
| 13 | 13 |
<2>$collectionID</2> |
| 14 |
</_merge>
|
|
| 14 |
</_join>
|
|
| 15 | 15 |
</2> |
| 16 | 16 |
<3>$catalogNumber</3> |
| 17 |
</_merge>
|
|
| 17 |
</_join>
|
|
| 18 | 18 |
</4> |
| 19 | 19 |
</_alt> |
| 20 | 20 |
</authorlocationcode> |
| ... | ... | |
| 200 | 200 |
<specimenreplicate> |
| 201 | 201 |
<catalognumber_dwc>$catalogNumber</catalognumber_dwc> |
| 202 | 202 |
<collectioncode_dwc> |
| 203 |
<_merge>
|
|
| 203 |
<_join>
|
|
| 204 | 204 |
<1>$collectionCode</1> |
| 205 | 205 |
<2>$collectionID</2> |
| 206 |
</_merge>
|
|
| 206 |
</_join>
|
|
| 207 | 207 |
</collectioncode_dwc> |
| 208 | 208 |
<institution_id><party><organizationname>$institutionCode</organizationname></party></institution_id> |
| 209 | 209 |
<sourceaccessioncode>$id</sourceaccessioncode> |
| mappings/VegCore-VegBIEN.csv | ||
|---|---|---|
| 10 | 10 |
locationID,"/location/authorlocationcode/_alt/2/_if[@name=""if locationID""]/cond/_exists", |
| 11 | 11 |
fieldNumber,"/location/authorlocationcode/_alt/2/_if[@name=""if locationID""]/else", |
| 12 | 12 |
occurrenceID,/location/authorlocationcode/_alt/3, |
| 13 |
institutionCode,/location/authorlocationcode/_alt/4/_merge/1,
|
|
| 14 |
collectionCode,/location/authorlocationcode/_alt/4/_merge/2/_merge/1,
|
|
| 15 |
collectionID,/location/authorlocationcode/_alt/4/_merge/2/_merge/2,
|
|
| 16 |
voucherType,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
|
|
| 17 |
catalogNumber,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/else",
|
|
| 13 |
institutionCode,/location/authorlocationcode/_alt/4/_join/1,
|
|
| 14 |
collectionCode,/location/authorlocationcode/_alt/4/_join/2/_join/1,
|
|
| 15 |
collectionID,/location/authorlocationcode/_alt/4/_join/2/_join/2,
|
|
| 16 |
voucherType,"/location/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
|
|
| 17 |
catalogNumber,"/location/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else",
|
|
| 18 | 18 |
verbatimElevation,"/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value", |
| 19 | 19 |
maximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
| 20 | 20 |
minimumElevationInMeters,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value", |
| ... | ... | |
| 75 | 75 |
individualID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
| 76 | 76 |
voucherType,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left", |
| 77 | 77 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
| 78 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
|
|
| 79 |
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/2,
|
|
| 78 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
|
|
| 79 |
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/2,
|
|
| 80 | 80 |
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 81 | 81 |
occurrenceID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 82 | 82 |
stemCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemcount, |
| mappings/Veg+.cs-VegBIEN.csv | ||
|---|---|---|
| 21 | 21 |
globalUniqueIdentifier,/location/authorlocationcode/_alt/3, |
| 22 | 22 |
id,/location/authorlocationcode/_alt/3, |
| 23 | 23 |
occurrenceID,/location/authorlocationcode/_alt/3, |
| 24 |
institutionCode,/location/authorlocationcode/_alt/4/_merge/1,
|
|
| 25 |
collectionCode,/location/authorlocationcode/_alt/4/_merge/2/_merge/1,
|
|
| 26 |
collectionID,/location/authorlocationcode/_alt/4/_merge/2/_merge/2,
|
|
| 27 |
voucherType,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
|
|
| 28 |
catalogNumber,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/else",
|
|
| 24 |
institutionCode,/location/authorlocationcode/_alt/4/_join/1,
|
|
| 25 |
collectionCode,/location/authorlocationcode/_alt/4/_join/2/_join/1,
|
|
| 26 |
collectionID,/location/authorlocationcode/_alt/4/_join/2/_join/2,
|
|
| 27 |
voucherType,"/location/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
|
|
| 28 |
catalogNumber,"/location/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else",
|
|
| 29 | 29 |
Elevation,"/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value", |
| 30 | 30 |
verbatimElevation,"/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value", |
| 31 | 31 |
maximumElevation,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
| ... | ... | |
| 124 | 124 |
individualID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
| 125 | 125 |
voucherType,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left", |
| 126 | 126 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
| 127 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
|
|
| 128 |
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/2,
|
|
| 127 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
|
|
| 128 |
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/2,
|
|
| 129 | 129 |
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 130 | 130 |
globalUniqueIdentifier,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 131 | 131 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| mappings/Veg+-VegBIEN.csv | ||
|---|---|---|
| 38 | 38 |
globalUniqueIdentifier,/location/authorlocationcode/_alt/3, |
| 39 | 39 |
id,/location/authorlocationcode/_alt/3, |
| 40 | 40 |
occurrenceID,/location/authorlocationcode/_alt/3, |
| 41 |
InstitutionCode,/location/authorlocationcode/_alt/4/_merge/1,
|
|
| 42 |
institutionCode,/location/authorlocationcode/_alt/4/_merge/1,
|
|
| 43 |
CollectionCode,/location/authorlocationcode/_alt/4/_merge/2/_merge/1,
|
|
| 44 |
collectionCode,/location/authorlocationcode/_alt/4/_merge/2/_merge/1,
|
|
| 45 |
CollectionID,/location/authorlocationcode/_alt/4/_merge/2/_merge/2,
|
|
| 46 |
collectionID,/location/authorlocationcode/_alt/4/_merge/2/_merge/2,
|
|
| 47 |
VoucherType,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
|
|
| 48 |
voucherType,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
|
|
| 49 |
CatalogNumber,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/else",
|
|
| 50 |
catalogNumber,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/else",
|
|
| 41 |
InstitutionCode,/location/authorlocationcode/_alt/4/_join/1,
|
|
| 42 |
institutionCode,/location/authorlocationcode/_alt/4/_join/1,
|
|
| 43 |
CollectionCode,/location/authorlocationcode/_alt/4/_join/2/_join/1,
|
|
| 44 |
collectionCode,/location/authorlocationcode/_alt/4/_join/2/_join/1,
|
|
| 45 |
CollectionID,/location/authorlocationcode/_alt/4/_join/2/_join/2,
|
|
| 46 |
collectionID,/location/authorlocationcode/_alt/4/_join/2/_join/2,
|
|
| 47 |
VoucherType,"/location/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
|
|
| 48 |
voucherType,"/location/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
|
|
| 49 |
CatalogNumber,"/location/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else",
|
|
| 50 |
catalogNumber,"/location/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else",
|
|
| 51 | 51 |
Elevation,"/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value", |
| 52 | 52 |
VerbatimElevation,"/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value", |
| 53 | 53 |
verbatimElevation,"/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value", |
| ... | ... | |
| 239 | 239 |
voucherType,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left", |
| 240 | 240 |
CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
| 241 | 241 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
| 242 |
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
|
|
| 243 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
|
|
| 244 |
CollectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/2,
|
|
| 245 |
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/2,
|
|
| 242 |
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
|
|
| 243 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
|
|
| 244 |
CollectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/2,
|
|
| 245 |
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/2,
|
|
| 246 | 246 |
InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 247 | 247 |
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 248 | 248 |
GlobalUniqueIdentifier,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Changed _merge to _join wherever the duplicate-eliminating functionality of _merge is not needed and a simple concatenation of non-NULL values is sufficient