Revision 4336
Added by Aaron Marcuse-Kubitza about 12 years ago
inputs/NCU-NCSC/specimens/test.xml.ref | ||
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3 | 3 |
<location id="-1"> |
4 | 4 |
<authorlocationcode> |
5 | 5 |
<_alt> |
6 |
<3>$Accession Number</3>
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7 |
<4>
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6 |
<1>$Accession Number</1>
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7 |
<2>
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8 | 8 |
<_join> |
9 | 9 |
<2>$SeriesName</2> |
10 | 10 |
<3>$Barcode</3> |
11 | 11 |
</_join> |
12 |
</4>
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12 |
</2>
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13 | 13 |
</_alt> |
14 | 14 |
</authorlocationcode> |
15 | 15 |
<elevation> |
inputs/SpeciesLink/specimens/test.xml.ref | ||
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3 | 3 |
<location id="-1"> |
4 | 4 |
<authorlocationcode> |
5 | 5 |
<_alt> |
6 |
<3>$dwc_dwcore_GlobalUniqueIdentifier</3>
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7 |
<4>
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6 |
<1>$dwc_dwcore_GlobalUniqueIdentifier</1>
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7 |
<2>
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8 | 8 |
<_join> |
9 | 9 |
<1> |
10 | 10 |
<_alt> |
... | ... | |
33 | 33 |
</_alt> |
34 | 34 |
</3> |
35 | 35 |
</_join> |
36 |
</4>
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36 |
</2>
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37 | 37 |
</_alt> |
38 | 38 |
</authorlocationcode> |
39 | 39 |
<elevation> |
inputs/QMOR/specimens/VegBIEN.csv | ||
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1 | 1 |
QMOR[Veg+],VegBIEN:,Comments |
2 |
id,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/3",
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3 |
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/1",
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4 |
collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/2/_join/1",
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5 |
collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/2/_join/2",
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6 |
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else",
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2 |
id,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
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3 |
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
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4 |
collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
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5 |
collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/2",
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6 |
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
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7 | 7 |
verbatimElevation,"/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value", |
8 | 8 |
maximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
9 | 9 |
minimumElevationInMeters,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value", |
mappings/VegCore-VegBIEN.csv | ||
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1 | 1 |
VegCore[Veg+],VegBIEN:,Comments |
2 | 2 |
subplot,"/location/_if[@name=""if subplot""]/cond/_exists", |
3 |
plotName,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/1",
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4 |
locationID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/2/_if[@name=""if locationID""]/cond/_exists",
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5 |
fieldNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/2/_if[@name=""if locationID""]/else",
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6 |
occurrenceID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/3",
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7 |
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/1",
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8 |
collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/2/_join/1",
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9 |
collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/2/_join/2",
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10 |
voucherType,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
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11 |
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else",
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3 |
plotName,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1",
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4 |
locationID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists",
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5 |
fieldNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/else",
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6 |
occurrenceID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
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7 |
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
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8 |
collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
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9 |
collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/2",
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10 |
voucherType,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
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11 |
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
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12 | 12 |
locationID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode", |
13 | 13 |
plotName,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode", |
14 | 14 |
locationID,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode", |
mappings/Veg+.cs-VegBIEN.csv | ||
---|---|---|
1 | 1 |
Veg+,VegBIEN:,Comments |
2 | 2 |
QuadratName,"/location/_if[@name=""if subplot""]/cond/_exists", |
3 | 3 |
subplot,"/location/_if[@name=""if subplot""]/cond/_exists", |
4 |
plotName,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/1",
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5 |
locationID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/2/_if[@name=""if locationID""]/cond/_exists",
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6 |
plotID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/2/_if[@name=""if locationID""]/cond/_exists",
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7 |
PlotCensusNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/2/_if[@name=""if locationID""]/else",
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8 |
authorObsCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/2/_if[@name=""if locationID""]/else",
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9 |
fieldNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/2/_if[@name=""if locationID""]/else",
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10 |
globalUniqueIdentifier,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/3",
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11 |
id,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/3",
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12 |
occurrenceID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/3",
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13 |
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/1",
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14 |
collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/2/_join/1",
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15 |
collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/2/_join/2",
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16 |
voucherType,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
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17 |
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else",
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4 |
plotName,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1",
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5 |
locationID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists",
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6 |
plotID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists",
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7 |
PlotCensusNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/else",
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8 |
authorObsCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/else",
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9 |
fieldNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/else",
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10 |
globalUniqueIdentifier,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
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11 |
id,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
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12 |
occurrenceID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
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13 |
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
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14 |
collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
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15 |
collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/2",
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16 |
voucherType,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
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17 |
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
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18 | 18 |
locationID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode", |
19 | 19 |
plotID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode", |
20 | 20 |
plotName,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode", |
inputs/MT/specimens/VegBIEN.csv | ||
---|---|---|
1 | 1 |
MT[Veg+],VegBIEN:,Comments |
2 |
id,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/3",
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3 |
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/1",
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4 |
collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/2/_join/1",
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5 |
collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/2/_join/2",
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2 |
id,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
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3 |
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
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4 |
collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
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5 |
collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/2",
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6 | 6 |
continent,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename", |
7 | 7 |
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
8 | 8 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
inputs/MT/specimens/test.xml.ref | ||
---|---|---|
3 | 3 |
<location id="-1"> |
4 | 4 |
<authorlocationcode> |
5 | 5 |
<_alt> |
6 |
<3>$id</3>
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7 |
<4>
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6 |
<1>$id</1>
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7 |
<2>
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8 | 8 |
<_join> |
9 | 9 |
<1>$institutionCode</1> |
10 | 10 |
<2> |
... | ... | |
14 | 14 |
</_join> |
15 | 15 |
</2> |
16 | 16 |
</_join> |
17 |
</4>
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17 |
</2>
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18 | 18 |
</_alt> |
19 | 19 |
</authorlocationcode> |
20 | 20 |
<locationdetermination> |
inputs/XAL/specimens/VegBIEN.csv | ||
---|---|---|
1 | 1 |
"XAL[Veg+,darwin:]:/content/record/",VegBIEN:,Comments |
2 |
InstitutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/1",
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3 |
CollectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/2/_join/1",
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4 |
CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else",
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2 |
InstitutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
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3 |
CollectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
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4 |
CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
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5 | 5 |
MaximumElevation,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
6 | 6 |
MinimumElevation,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value", |
7 | 7 |
MinimumElevation,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value", |
inputs/NY/specimens/VegBIEN.csv | ||
---|---|---|
1 | 1 |
NY[Veg+],VegBIEN:,Comments |
2 |
UniqueNYInternalRecordNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/3",
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3 |
InstitutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/1",
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4 |
CollectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/2/_join/1",
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5 |
CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else",
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2 |
UniqueNYInternalRecordNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
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3 |
InstitutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
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4 |
CollectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
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5 |
CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
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6 | 6 |
MaximumElevation,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
7 | 7 |
MinimumElevation,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value/_nullIf:[null=.]/value", |
8 | 8 |
MinimumElevation,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value/_nullIf:[null=.]/value", |
inputs/NY/specimens/test.xml.ref | ||
---|---|---|
3 | 3 |
<location id="-1"> |
4 | 4 |
<authorlocationcode> |
5 | 5 |
<_alt> |
6 |
<3>$UniqueNYInternalRecordNumber</3>
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7 |
<4>
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6 |
<1>$UniqueNYInternalRecordNumber</1>
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7 |
<2>
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8 | 8 |
<_join> |
9 | 9 |
<1>$InstitutionCode</1> |
10 | 10 |
<2>$CollectionCode</2> |
11 | 11 |
<3>$CatalogNumber</3> |
12 | 12 |
</_join> |
13 |
</4>
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13 |
</2>
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14 | 14 |
</_alt> |
15 | 15 |
</authorlocationcode> |
16 | 16 |
<elevation> |
inputs/Madidi/0.plots/VegBIEN.csv | ||
---|---|---|
1 | 1 |
Madidi[Veg+],VegBIEN:,Comments |
2 |
Inventory name,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/1",
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3 |
Inventory code,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/2/_if[@name=""if locationID""]/cond/_exists",
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2 |
Inventory name,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1",
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3 |
Inventory code,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists",
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4 | 4 |
Inventory code,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode", |
5 | 5 |
Inventory name,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode", |
6 | 6 |
Inventory code,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode", |
inputs/UNCC/specimens/VegBIEN.csv | ||
---|---|---|
1 | 1 |
UNCC[Veg+],VegBIEN:,Comments |
2 |
accession,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/3",
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3 |
herbarium,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/1",
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2 |
accession,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
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3 |
herbarium,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
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4 | 4 |
county,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename", |
5 | 5 |
state,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename", |
6 | 6 |
country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename", |
inputs/UNCC/specimens/test.xml.ref | ||
---|---|---|
3 | 3 |
<location id="-1"> |
4 | 4 |
<authorlocationcode> |
5 | 5 |
<_alt> |
6 |
<3>$accession</3>
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7 |
<4>$herbarium</4>
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6 |
<1>$accession</1>
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7 |
<2>$herbarium</2>
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8 | 8 |
</_alt> |
9 | 9 |
</authorlocationcode> |
10 | 10 |
<locationdetermination> |
inputs/ACAD/specimens/VegBIEN.csv | ||
---|---|---|
1 | 1 |
ACAD[Veg+],VegBIEN:,Comments |
2 |
id,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/3",
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3 |
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/1",
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4 |
collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/2/_join/1",
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5 |
collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/2/_join/2",
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6 |
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else",
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2 |
id,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
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3 |
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
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4 |
collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
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5 |
collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/2",
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6 |
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
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7 | 7 |
verbatimElevation,"/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value", |
8 | 8 |
decimalLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value", |
9 | 9 |
decimalLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value", |
inputs/ACAD/specimens/test.xml.ref | ||
---|---|---|
3 | 3 |
<location id="-1"> |
4 | 4 |
<authorlocationcode> |
5 | 5 |
<_alt> |
6 |
<3>$id</3>
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7 |
<4>
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6 |
<1>$id</1>
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7 |
<2>
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8 | 8 |
<_join> |
9 | 9 |
<1>$institutionCode</1> |
10 | 10 |
<2> |
... | ... | |
15 | 15 |
</2> |
16 | 16 |
<3>$catalogNumber</3> |
17 | 17 |
</_join> |
18 |
</4>
|
|
18 |
</2>
|
|
19 | 19 |
</_alt> |
20 | 20 |
</authorlocationcode> |
21 | 21 |
<elevation> |
inputs/CVS/1.organisms/VegBIEN.csv | ||
---|---|---|
1 | 1 |
CVS,VegBIEN:,Comments |
2 |
authorObsCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/2/_if[@name=""if locationID""]/else",
|
|
2 |
authorObsCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/else",
|
|
3 | 3 |
locationAccuracy-m,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1, |
4 | 4 |
realLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value/_alt/1", |
5 | 5 |
publicLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value/_alt/2", |
inputs/SALVIAS-CSV/0.plots/VegBIEN.csv | ||
---|---|---|
1 | 1 |
SALVIAS-CSV,VegBIEN:,Comments |
2 |
plot_code,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/1",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
|
|
3 |
PLOT_ID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/2/_if[@name=""if locationID""]/cond/_exists","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
|
|
2 |
plot_code,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
|
|
3 |
PLOT_ID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
|
|
4 | 4 |
PLOT_ID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata." |
5 | 5 |
plot_code,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project) |
6 | 6 |
PLOT_ID,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata." |
inputs/SALVIAS-CSV/1.organisms/VegBIEN.csv | ||
---|---|---|
1 | 1 |
SALVIAS-CSV,VegBIEN:,Comments |
2 | 2 |
subplot,"/location/_if[@name=""if subplot""]/cond/_exists", |
3 |
plot_code,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/1",
|
|
4 |
PLOT_ID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/2/_if[@name=""if locationID""]/cond/_exists",
|
|
5 |
det_type,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
|
|
6 |
coll_number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else/_alt/1",Brad: Map instead as for voucher_string
|
|
7 |
voucher_string,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else/_alt/2","Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
|
|
3 |
plot_code,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1",
|
|
4 |
PLOT_ID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists",
|
|
5 |
det_type,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
|
|
6 |
coll_number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else/_alt/1",Brad: Map instead as for voucher_string
|
|
7 |
voucher_string,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else/_alt/2","Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
|
|
8 | 8 |
PLOT_ID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode", |
9 | 9 |
plot_code,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode", |
10 | 10 |
PLOT_ID,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode", |
inputs/REMIB/specimens/VegBIEN.csv | ||
---|---|---|
1 | 1 |
REMIB[Veg+],VegBIEN:,Comments |
2 |
accession_number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/3",
|
|
3 |
acronym,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/2/_join/1",
|
|
2 |
accession_number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
|
|
3 |
acronym,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
|
|
4 | 4 |
lat_deg,"/location/locationdetermination/latitude/_alt/2/_nullIf:[null=0,type=float]/value", |
5 | 5 |
long_deg,"/location/locationdetermination/longitude/_alt/2/_nullIf:[null=0,type=float]/value", |
6 | 6 |
county,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename", |
inputs/REMIB/specimens/test.xml.ref | ||
---|---|---|
3 | 3 |
<location id="-1"> |
4 | 4 |
<authorlocationcode> |
5 | 5 |
<_alt> |
6 |
<3>$accession_number</3>
|
|
7 |
<4>$acronym</4>
|
|
6 |
<1>$accession_number</1>
|
|
7 |
<2>$acronym</2>
|
|
8 | 8 |
</_alt> |
9 | 9 |
</authorlocationcode> |
10 | 10 |
<locationdetermination> |
inputs/CTFS/Subplot/VegBIEN.csv | ||
---|---|---|
1 | 1 |
CTFS[Veg+],VegBIEN:,Comments |
2 | 2 |
QuadratName,"/location/_if[@name=""if subplot""]/cond/_exists", |
3 |
PlotID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/2/_if[@name=""if locationID""]/cond/_exists",
|
|
3 |
PlotID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists",
|
|
4 | 4 |
PlotID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode", |
5 | 5 |
PlotID,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode", |
6 | 6 |
QuadratName,/location/authorlocationcode, |
inputs/CTFS/Plot/VegBIEN.csv | ||
---|---|---|
1 | 1 |
CTFS[Veg+],VegBIEN:,Comments |
2 |
PlotName,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/1",
|
|
3 |
PlotID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/2/_if[@name=""if locationID""]/cond/_exists",
|
|
2 |
PlotName,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1",
|
|
3 |
PlotID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists",
|
|
4 | 4 |
PlotID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode", |
5 | 5 |
PlotName,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode", |
6 | 6 |
PlotID,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode", |
inputs/SALVIAS/0.plots/VegBIEN.csv | ||
---|---|---|
1 | 1 |
SALVIAS,VegBIEN:,Comments |
2 |
SiteCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/1",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
|
|
3 |
PlotID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/2/_if[@name=""if locationID""]/cond/_exists","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
|
|
2 |
SiteCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
|
|
3 |
PlotID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
|
|
4 | 4 |
PlotID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata." |
5 | 5 |
SiteCode,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project) |
6 | 6 |
PlotID,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata." |
inputs/SALVIAS/1.organisms/VegBIEN.csv | ||
---|---|---|
1 | 1 |
SALVIAS,VegBIEN:,Comments |
2 | 2 |
Line,"/location/_if[@name=""if subplot""]/cond/_exists", |
3 |
PlotCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/1",
|
|
4 |
PlotID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/2/_if[@name=""if locationID""]/cond/_exists",
|
|
5 |
DetType,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
|
|
6 |
coll_number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else/_alt/1",Brad: Map instead as for voucher_string
|
|
7 |
SourceVoucher,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else/_alt/2","Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
|
|
3 |
PlotCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1",
|
|
4 |
PlotID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists",
|
|
5 |
DetType,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
|
|
6 |
coll_number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else/_alt/1",Brad: Map instead as for voucher_string
|
|
7 |
SourceVoucher,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else/_alt/2","Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
|
|
8 | 8 |
PlotID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode", |
9 | 9 |
PlotCode,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode", |
10 | 10 |
PlotID,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode", |
inputs/U/specimens/VegBIEN.csv | ||
---|---|---|
1 | 1 |
U[Veg+],VegBIEN:,Comments |
2 |
ID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/3",
|
|
3 |
Barcode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else",
|
|
2 |
ID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
|
|
3 |
Barcode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
|
|
4 | 4 |
Lat,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value", |
5 | 5 |
Long,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value", |
6 | 6 |
Country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename", |
inputs/U/specimens/test.xml.ref | ||
---|---|---|
3 | 3 |
<location id="-1"> |
4 | 4 |
<authorlocationcode> |
5 | 5 |
<_alt> |
6 |
<3>$ID</3>
|
|
7 |
<4>$Barcode</4>
|
|
6 |
<1>$ID</1>
|
|
7 |
<2>$Barcode</2>
|
|
8 | 8 |
</_alt> |
9 | 9 |
</authorlocationcode> |
10 | 10 |
<locationdetermination> |
inputs/ARIZ/specimens/VegBIEN.csv | ||
---|---|---|
1 | 1 |
ARIZ[Veg+],VegBIEN:,Comments |
2 |
GlobalUniqueIdentifier,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/3",
|
|
3 |
InstitutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/1",
|
|
4 |
CollectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/2/_join/1",
|
|
5 |
CatalogNumberNumeric,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else/_alt/1",
|
|
6 |
CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else/_alt/2",Don't overwrite CatalogNumberNumeric
|
|
2 |
GlobalUniqueIdentifier,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
|
|
3 |
InstitutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
|
|
4 |
CollectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
|
|
5 |
CatalogNumberNumeric,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else/_alt/1",
|
|
6 |
CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else/_alt/2",Don't overwrite CatalogNumberNumeric
|
|
7 | 7 |
VerbatimElevation,"/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value", |
8 | 8 |
MaximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
9 | 9 |
MinimumElevationInMeters,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value", |
inputs/ARIZ/specimens/test.xml.ref | ||
---|---|---|
3 | 3 |
<location id="-1"> |
4 | 4 |
<authorlocationcode> |
5 | 5 |
<_alt> |
6 |
<3>$GlobalUniqueIdentifier</3>
|
|
7 |
<4>
|
|
6 |
<1>$GlobalUniqueIdentifier</1>
|
|
7 |
<2>
|
|
8 | 8 |
<_join> |
9 | 9 |
<1>$InstitutionCode</1> |
10 | 10 |
<2>$CollectionCode</2> |
... | ... | |
15 | 15 |
</_alt> |
16 | 16 |
</3> |
17 | 17 |
</_join> |
18 |
</4>
|
|
18 |
</2>
|
|
19 | 19 |
</_alt> |
20 | 20 |
</authorlocationcode> |
21 | 21 |
<elevation> |
inputs/GBIF/specimens/VegBIEN.csv | ||
---|---|---|
1 | 1 |
GBIF[Veg+],VegBIEN:,Comments |
2 |
InstitutionCD,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/1",
|
|
3 |
CollectionCD,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/2/_join/1",
|
|
4 |
CatalogNO,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else",
|
|
2 |
InstitutionCD,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
|
|
3 |
CollectionCD,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
|
|
4 |
CatalogNO,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
|
|
5 | 5 |
MaximumElevationInMeter,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
6 | 6 |
MinimumElevationInMeter,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value", |
7 | 7 |
MinimumElevationInMeter,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value", |
inputs/NCU-NCSC/specimens/VegBIEN.csv | ||
---|---|---|
1 | 1 |
NCU-NCSC[Veg+],VegBIEN:,Comments |
2 |
Accession Number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/3",
|
|
3 |
SeriesName,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/2/_join/1",
|
|
4 |
Barcode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else",
|
|
2 |
Accession Number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
|
|
3 |
SeriesName,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
|
|
4 |
Barcode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
|
|
5 | 5 |
Elevation,"/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value", |
6 | 6 |
Accuracy,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1, |
7 | 7 |
Lat (-=S),"/location/locationdetermination/latitude/_alt/2/_nullIf:[null=0,type=float]/value/_replace:[""\?$""=]/value", |
inputs/SpeciesLink/specimens/VegBIEN.csv | ||
---|---|---|
1 | 1 |
"SpeciesLink[Veg+,dwc_dwcore_,dwc_curatorial_,dwc_geospatial_,http__purl_org_,dwc_terms_,conceptual_darwin_2003_1_0_]",VegBIEN:,Comments |
2 |
GlobalUniqueIdentifier,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/3",
|
|
3 |
InstitutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/1",
|
|
4 |
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/1",
|
|
5 |
CollectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/2/_join/1",
|
|
6 |
collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/2/_join/1",
|
|
7 |
collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/2/_join/2",
|
|
8 |
CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else",
|
|
9 |
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else",
|
|
2 |
GlobalUniqueIdentifier,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
|
|
3 |
InstitutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
|
|
4 |
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
|
|
5 |
CollectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
|
|
6 |
collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
|
|
7 |
collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/2",
|
|
8 |
CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
|
|
9 |
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
|
|
10 | 10 |
MaximumElevation,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
11 | 11 |
MaximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
12 | 12 |
maximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
inputs/MO/specimens/VegBIEN.csv | ||
---|---|---|
1 | 1 |
MO[Veg+],VegBIEN:,Comments |
2 |
InstitutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/1",
|
|
3 |
CollectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/2/_join/1",
|
|
4 |
CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else",
|
|
2 |
InstitutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
|
|
3 |
CollectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
|
|
4 |
CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
|
|
5 | 5 |
MaximumElevation,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
6 | 6 |
MinimumElevation,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value", |
7 | 7 |
MinimumElevation,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value", |
inputs/QMOR/specimens/test.xml.ref | ||
---|---|---|
3 | 3 |
<location id="-1"> |
4 | 4 |
<authorlocationcode> |
5 | 5 |
<_alt> |
6 |
<3>$id</3>
|
|
7 |
<4>
|
|
6 |
<1>$id</1>
|
|
7 |
<2>
|
|
8 | 8 |
<_join> |
9 | 9 |
<1>$institutionCode</1> |
10 | 10 |
<2> |
... | ... | |
15 | 15 |
</2> |
16 | 16 |
<3>$catalogNumber</3> |
17 | 17 |
</_join> |
18 |
</4>
|
|
18 |
</2>
|
|
19 | 19 |
</_alt> |
20 | 20 |
</authorlocationcode> |
21 | 21 |
<elevation> |
mappings/Veg+-VegBIEN.csv | ||
---|---|---|
2 | 2 |
QuadratName,"/location/_if[@name=""if subplot""]/cond/_exists", |
3 | 3 |
Subplot,"/location/_if[@name=""if subplot""]/cond/_exists", |
4 | 4 |
subplot,"/location/_if[@name=""if subplot""]/cond/_exists", |
5 |
PlotName,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/1",
|
|
6 |
plotName,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/1",
|
|
7 |
LocationID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/2/_if[@name=""if locationID""]/cond/_exists",
|
|
8 |
PlotID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/2/_if[@name=""if locationID""]/cond/_exists",
|
|
9 |
locationID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/2/_if[@name=""if locationID""]/cond/_exists",
|
|
10 |
plotID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/2/_if[@name=""if locationID""]/cond/_exists",
|
|
11 |
AuthorObsCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/2/_if[@name=""if locationID""]/else",
|
|
12 |
FieldNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/2/_if[@name=""if locationID""]/else",
|
|
13 |
PlotCensusNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/2/_if[@name=""if locationID""]/else",
|
|
14 |
authorObsCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/2/_if[@name=""if locationID""]/else",
|
|
15 |
fieldNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/2/_if[@name=""if locationID""]/else",
|
|
16 |
GlobalUniqueIdentifier,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/3",
|
|
17 |
Id,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/3",
|
|
18 |
OccurrenceID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/3",
|
|
19 |
globalUniqueIdentifier,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/3",
|
|
20 |
id,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/3",
|
|
21 |
occurrenceID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/3",
|
|
22 |
InstitutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/1",
|
|
23 |
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/1",
|
|
24 |
CollectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/2/_join/1",
|
|
25 |
collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/2/_join/1",
|
|
26 |
CollectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/2/_join/2",
|
|
27 |
collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/2/_join/2",
|
|
28 |
VoucherType,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
|
|
29 |
voucherType,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
|
|
30 |
CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else",
|
|
31 |
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_alt/4/_join/3/_if[@name=""if indirect voucher""]/else",
|
|
5 |
PlotName,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1",
|
|
6 |
plotName,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1",
|
|
7 |
LocationID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists",
|
|
8 |
PlotID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists",
|
|
9 |
locationID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists",
|
|
10 |
plotID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists",
|
|
11 |
AuthorObsCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/else",
|
|
12 |
FieldNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/else",
|
|
13 |
PlotCensusNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/else",
|
|
14 |
authorObsCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/else",
|
|
15 |
fieldNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/else",
|
|
16 |
GlobalUniqueIdentifier,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
|
|
17 |
Id,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
|
|
18 |
OccurrenceID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
|
|
19 |
globalUniqueIdentifier,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
|
|
20 |
id,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
|
|
21 |
occurrenceID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
|
|
22 |
InstitutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
|
|
23 |
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
|
|
24 |
CollectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
|
|
25 |
collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
|
|
26 |
CollectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/2",
|
|
27 |
collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/2",
|
|
28 |
VoucherType,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
|
|
29 |
voucherType,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
|
|
30 |
CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
|
|
31 |
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
|
|
32 | 32 |
LocationID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode", |
33 | 33 |
PlotID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode", |
34 | 34 |
locationID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode", |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: location.authorlocationcode mappings: Use _first to remove specimens-related alternatives for this field from consideration when plots-related alternatives exist. This avoids unintentionally using specimens-related columns for this field in plots data.