Revision 4371
Added by Aaron Marcuse-Kubitza about 12 years ago
| inputs/SALVIAS-CSV/1.organisms/VegBIEN.csv | ||
|---|---|---|
| 45 | 45 |
y_position,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition,Brad: See comment above for x_position |
| 46 | 46 |
individual_code,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/2,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot." |
| 47 | 47 |
habit,"/location/locationevent/taxonoccurrence/growthform/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=*]/value","Brad: This is growth form (tree, shrub, herb, etc.). It is an observation of a trait.; According to <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.habit>, <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/SALVIAS#Habit>"
|
| 48 |
OBSERVATION_ID,/location/locationevent/taxonoccurrence/sourceaccessioncode,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later." |
|
| 48 |
OBSERVATION_ID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
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|
| 49 | 49 |
specific_authority,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_simplifyPath:[next=parent_id]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname/_alt/1",Brad: This is the author of the scientificName. |
| 50 | 50 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_simplifyPath:[next=parent_id]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/first", |
| 51 | 51 |
infra_ep_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_simplifyPath:[next=parent_id]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last", |
| inputs/CTFS/StemObservation/VegBIEN.csv | ||
|---|---|---|
| 13 | 13 |
Tag,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[""""/iscurrent/_alt/2=true]/tag",Quotes sort it before tag2 |
| 14 | 14 |
x,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/xposition, |
| 15 | 15 |
y,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition, |
| 16 |
MeasureID,/location/locationevent/taxonoccurrence/sourceaccessioncode, |
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| 16 |
MeasureID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2,
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|
| 17 | 17 |
SpeciesAuthority,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_simplifyPath:[next=parent_id]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname/_alt/1", |
| 18 | 18 |
SubSpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_simplifyPath:[next=parent_id]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last", |
| 19 | 19 |
SpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_simplifyPath:[next=parent_id]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname", |
| inputs/SALVIAS/1.organisms/VegBIEN.csv | ||
|---|---|---|
| 48 | 48 |
y_position,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition,Brad: See comment above for x_position |
| 49 | 49 |
Ind,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/2,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot." |
| 50 | 50 |
Habit,"/location/locationevent/taxonoccurrence/growthform/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=*]/value","Brad: This is growth form (tree, shrub, herb, etc.). It is an observation of a trait.; According to <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.habit>, <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/SALVIAS#Habit>"
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| 51 |
PlotObsID,/location/locationevent/taxonoccurrence/sourceaccessioncode,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later." |
|
| 51 |
PlotObsID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
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| 52 | 52 |
auth,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_simplifyPath:[next=parent_id]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname/_alt/1",Brad: This is the author of the scientificName. |
| 53 | 53 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_simplifyPath:[next=parent_id]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/first", |
| 54 | 54 |
infra_ep_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_simplifyPath:[next=parent_id]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last", |
| inputs/SALVIAS/2.stems/VegBIEN.csv | ||
|---|---|---|
| 13 | 13 |
stem_id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/sourceaccessioncode, |
| 14 | 14 |
stem_tag1,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[""""/iscurrent/_alt/2=true]/tag",Quotes sort it before tag2 |
| 15 | 15 |
stem_tag2,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[iscurrent=true]:[../stemtag?[iscurrent/_alt/2=true]/iscurrent/_alt/1=false]/tag, |
| 16 |
PlotObsID,/location/locationevent/taxonoccurrence/sourceaccessioncode, |
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| 16 |
PlotObsID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2, |
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| mappings/VegCore-VegBIEN.csv | ||
|---|---|---|
| 105 | 105 |
growthForm,/location/locationevent/taxonoccurrence/growthform, |
| 106 | 106 |
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value", |
| 107 | 107 |
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value", |
| 108 |
individualID,/location/locationevent/taxonoccurrence/sourceaccessioncode, |
|
| 108 |
taxonOccurrenceID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/1, |
|
| 109 |
individualID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2, |
|
| 109 | 110 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first, |
| 110 | 111 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/middlename/_namePart/middle, |
| 111 | 112 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/surname/_namePart/last, |
| mappings/Veg+-VegBIEN.csv | ||
|---|---|---|
| 330 | 330 |
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value", |
| 331 | 331 |
EstablishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value", |
| 332 | 332 |
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value", |
| 333 |
IndividualID,/location/locationevent/taxonoccurrence/sourceaccessioncode, |
|
| 334 |
individualID,/location/locationevent/taxonoccurrence/sourceaccessioncode, |
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| 333 |
TaxonOccurrenceID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/1, |
|
| 334 |
taxonOccurrenceID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/1, |
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| 335 |
IndividualID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2, |
|
| 336 |
individualID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2, |
|
| 335 | 337 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first, |
| 336 | 338 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first, |
| 337 | 339 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/middlename/_namePart/middle, |
| mappings/Veg+.cs-VegBIEN.csv | ||
|---|---|---|
| 172 | 172 |
verbatimGrowthForm,"/location/locationevent/taxonoccurrence/growthform/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=*]/value","According to <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.habit>, <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/SALVIAS#Habit>"
|
| 173 | 173 |
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value", |
| 174 | 174 |
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value", |
| 175 |
individualID,/location/locationevent/taxonoccurrence/sourceaccessioncode, |
|
| 175 |
taxonOccurrenceID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/1, |
|
| 176 |
individualID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2, |
|
| 176 | 177 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first, |
| 177 | 178 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/middlename/_namePart/middle, |
| 178 | 179 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/surname/_namePart/last, |
| mappings/for_review/VegCore-VegBIEN.csv | ||
|---|---|---|
| 105 | 105 |
growthForm,//taxonoccurrence/growthform, |
| 106 | 106 |
establishmentMeans,//taxonoccurrence/iscultivated, |
| 107 | 107 |
establishmentMeans,//taxonoccurrence/isnative, |
| 108 |
taxonOccurrenceID,//taxonoccurrence/sourceaccessioncode, |
|
| 108 | 109 |
individualID,//taxonoccurrence/sourceaccessioncode, |
| 109 | 110 |
identifiedBy,//taxonoccurrence/taxondetermination[]/*_id/party/givenname, |
| 110 | 111 |
identifiedBy,//taxonoccurrence/taxondetermination[]/*_id/party/middlename, |
| mappings/VegCore.self.csv | ||
|---|---|---|
| 99 | 99 |
subplotX,subplotX |
| 100 | 100 |
subplotY,subplotY |
| 101 | 101 |
tag,tag |
| 102 |
taxonOccurrenceID,taxonOccurrenceID |
|
| 102 | 103 |
taxonRank,taxonRank |
| 103 | 104 |
taxonRemarks,taxonRemarks |
| 104 | 105 |
temperature,temperature |
| mappings/Veg+.self.csv | ||
|---|---|---|
| 157 | 157 |
Subspecies,Subspecies |
| 158 | 158 |
Tag,Tag |
| 159 | 159 |
TaxonFit,TaxonFit |
| 160 |
TaxonOccurrenceID,TaxonOccurrenceID |
|
| 160 | 161 |
TaxonRank,TaxonRank |
| 161 | 162 |
TaxonRemarks,TaxonRemarks |
| 162 | 163 |
Temperature,Temperature |
| ... | ... | |
| 326 | 327 |
subspecies,subspecies |
| 327 | 328 |
tag,tag |
| 328 | 329 |
taxonFit,taxonFit |
| 330 |
taxonOccurrenceID,taxonOccurrenceID |
|
| 329 | 331 |
taxonRank,taxonRank |
| 330 | 332 |
taxonRemarks,taxonRemarks |
| 331 | 333 |
temperature,temperature |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Mapped taxonOccurrenceID