Revision 4387
Added by Aaron Marcuse-Kubitza over 12 years ago
| inputs/FIA/Organism/src.csv | ||
|---|---|---|
| 1 |
FIA[Veg+],Veg+,Comments |
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| 2 |
TreeTag,, |
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| 3 |
Genus,, |
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| 4 |
SpecificEpithet,, |
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| 5 |
MeasYear,, |
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| 6 |
MeasMon,, |
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| 7 |
MeasDay,, |
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| 8 |
DecimalLatitude,, |
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| 9 |
DecimalLongitude,, |
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| 10 |
PlotCD,, |
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| 11 |
StateProvince,, |
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| 12 |
County,, |
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| 13 |
DBH,, |
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| 14 |
HOM,, |
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| 15 |
BasalDiameter,, |
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| 16 |
Height,, |
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| inputs/FIA/Organism/map.csv | ||
|---|---|---|
| 1 |
FIA[Veg+],Veg+,Comments |
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| 2 |
TreeTag,tag, |
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| 3 |
MeasYear,yearCollected, |
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| 4 |
MeasMon,monthCollected, |
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| 5 |
MeasDay,dayCollected, |
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| 6 |
PlotCD,plotID, |
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| 7 |
HOM,, |
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| inputs/FIA/Organism/map.full.csv | ||
|---|---|---|
| 1 |
FIA[Veg+],Veg+,Comments |
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| 2 |
BasalDiameter,BasalDiameter |
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| 3 |
County,County |
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| 4 |
DBH,DBH |
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| 5 |
DecimalLatitude,DecimalLatitude |
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| 6 |
DecimalLongitude,DecimalLongitude |
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| 7 |
Genus,Genus |
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| 8 |
Height,Height |
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| 9 |
SpecificEpithet,SpecificEpithet |
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| 10 |
StateProvince,StateProvince |
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| 11 |
MeasDay,dayCollected, |
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| 12 |
MeasMon,monthCollected, |
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| 13 |
PlotCD,plotID, |
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| 14 |
TreeTag,tag, |
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| 15 |
MeasYear,yearCollected, |
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| inputs/FIA/Organism/VegBIEN.csv | ||
|---|---|---|
| 1 |
FIA[Veg+],VegBIEN:,Comments |
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| 2 |
PlotCD,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists", |
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| 3 |
PlotCD,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode", |
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| 4 |
PlotCD,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode", |
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| 5 |
DecimalLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value", |
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| 6 |
DecimalLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value", |
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| 7 |
County,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename", |
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| 8 |
StateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename", |
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| 9 |
MeasDay,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
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| 10 |
MeasMon,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
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| 11 |
MeasYear,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
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| 12 |
MeasDay,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
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| 13 |
MeasMon,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
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| 14 |
MeasYear,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
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| 15 |
MeasDay,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
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| 16 |
MeasMon,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
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| 17 |
MeasYear,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
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| 18 |
BasalDiameter,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/basaldiameter, |
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| 19 |
DBH,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight, |
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| 20 |
Height,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/height, |
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| 21 |
TreeTag,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[""""/iscurrent/_alt/2=true]/tag",Quotes sort it before tag2 |
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| 22 |
SpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_simplifyPath:[next=parent_id]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname", |
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| 23 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_simplifyPath:[next=parent_id]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname", |
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| inputs/FIA/Organism/test.xml.ref | ||
|---|---|---|
| 1 |
Put template: |
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| 2 |
<VegBIEN> |
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| 3 |
<location id="-1"> |
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| 4 |
<sourceaccessioncode>$PlotCD</sourceaccessioncode> |
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| 5 |
<locationdetermination> |
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| 6 |
<latitude> |
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| 7 |
<_nullIf> |
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| 8 |
<null>0</null> |
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| 9 |
<type>float</type> |
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| 10 |
<value>$DecimalLatitude</value> |
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| 11 |
</_nullIf> |
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| 12 |
</latitude> |
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| 13 |
<longitude> |
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| 14 |
<_nullIf> |
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| 15 |
<null>0</null> |
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| 16 |
<type>float</type> |
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| 17 |
<value>$DecimalLongitude</value> |
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| 18 |
</_nullIf> |
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| 19 |
</longitude> |
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| 20 |
<namedplace_id> |
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| 21 |
<_simplifyPath> |
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| 22 |
<next>parent_id/namedplace</next> |
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| 23 |
<require>placename</require> |
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| 24 |
<path> |
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| 25 |
<namedplace> |
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| 26 |
<rank>county</rank> |
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| 27 |
<placename>$County</placename> |
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| 28 |
<parent_id> |
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| 29 |
<namedplace> |
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| 30 |
<rank>stateProvince</rank> |
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| 31 |
<placename>$StateProvince</placename> |
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| 32 |
</namedplace> |
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| 33 |
</parent_id> |
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| 34 |
</namedplace> |
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| 35 |
</path> |
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| 36 |
</_simplifyPath> |
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| 37 |
</namedplace_id> |
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| 38 |
</locationdetermination> |
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| 39 |
<locationevent> |
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| 40 |
<obsenddate> |
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| 41 |
<_date> |
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| 42 |
<date> |
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| 43 |
<_dateRangeEnd> |
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| 44 |
<value> |
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| 45 |
<_date> |
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| 46 |
<day> |
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| 47 |
<_nullIf> |
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| 48 |
<null>0</null> |
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| 49 |
<type>float</type> |
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| 50 |
<value>$MeasDay</value> |
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| 51 |
</_nullIf> |
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| 52 |
</day> |
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| 53 |
<month> |
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| 54 |
<_nullIf> |
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| 55 |
<null>0</null> |
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| 56 |
<type>float</type> |
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| 57 |
<value>$MeasMon</value> |
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| 58 |
</_nullIf> |
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| 59 |
</month> |
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| 60 |
<year> |
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| 61 |
<_nullIf> |
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| 62 |
<null>0</null> |
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| 63 |
<type>float</type> |
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| 64 |
<value>$MeasYear</value> |
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| 65 |
</_nullIf> |
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| 66 |
</year> |
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| 67 |
</_date> |
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| 68 |
</value> |
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| 69 |
</_dateRangeEnd> |
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| 70 |
</date> |
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| 71 |
</_date> |
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| 72 |
</obsenddate> |
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| 73 |
<obsstartdate> |
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| 74 |
<_date> |
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| 75 |
<date> |
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| 76 |
<_dateRangeStart> |
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| 77 |
<value> |
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| 78 |
<_date> |
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| 79 |
<day> |
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| 80 |
<_nullIf> |
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| 81 |
<null>0</null> |
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| 82 |
<type>float</type> |
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| 83 |
<value>$MeasDay</value> |
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| 84 |
</_nullIf> |
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| 85 |
</day> |
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| 86 |
<month> |
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| 87 |
<_nullIf> |
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| 88 |
<null>0</null> |
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| 89 |
<type>float</type> |
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| 90 |
<value>$MeasMon</value> |
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| 91 |
</_nullIf> |
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| 92 |
</month> |
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| 93 |
<year> |
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| 94 |
<_nullIf> |
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| 95 |
<null>0</null> |
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| 96 |
<type>float</type> |
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| 97 |
<value>$MeasYear</value> |
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| 98 |
</_nullIf> |
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| 99 |
</year> |
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| 100 |
</_date> |
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| 101 |
</value> |
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| 102 |
</_dateRangeStart> |
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| 103 |
</date> |
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| 104 |
</_date> |
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| 105 |
</obsstartdate> |
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| 106 |
<taxonoccurrence> |
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| 107 |
<aggregateoccurrence> |
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| 108 |
<collectiondate> |
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| 109 |
<_date> |
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| 110 |
<date> |
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| 111 |
<_date> |
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| 112 |
<day> |
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| 113 |
<_nullIf> |
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| 114 |
<null>0</null> |
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| 115 |
<type>float</type> |
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| 116 |
<value>$MeasDay</value> |
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| 117 |
</_nullIf> |
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| 118 |
</day> |
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| 119 |
<month> |
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| 120 |
<_nullIf> |
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| 121 |
<null>0</null> |
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| 122 |
<type>float</type> |
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| 123 |
<value>$MeasMon</value> |
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| 124 |
</_nullIf> |
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| 125 |
</month> |
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| 126 |
<year> |
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| 127 |
<_nullIf> |
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| 128 |
<null>0</null> |
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| 129 |
<type>float</type> |
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| 130 |
<value>$MeasYear</value> |
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| 131 |
</_nullIf> |
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| 132 |
</year> |
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| 133 |
</_date> |
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| 134 |
</date> |
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| 135 |
</_date> |
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| 136 |
</collectiondate> |
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| 137 |
<plantobservation> |
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| 138 |
<stemobservation> |
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| 139 |
<basaldiameter>$BasalDiameter</basaldiameter> |
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| 140 |
<diameterbreastheight>$DBH</diameterbreastheight> |
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| 141 |
<height>$Height</height> |
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| 142 |
<stemtag> |
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| 143 |
<iscurrent>true</iscurrent> |
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| 144 |
<tag>$TreeTag</tag> |
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| 145 |
</stemtag> |
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| 146 |
</stemobservation> |
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| 147 |
</plantobservation> |
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| 148 |
</aggregateoccurrence> |
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| 149 |
<taxondetermination> |
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| 150 |
<plantconcept_id> |
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| 151 |
<plantconcept> |
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| 152 |
<plantname_id> |
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| 153 |
<_simplifyPath> |
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| 154 |
<next>parent_id</next> |
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| 155 |
<path> |
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| 156 |
<plantname> |
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| 157 |
<rank>binomial</rank> |
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| 158 |
<parent_id> |
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| 159 |
<plantname> |
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| 160 |
<rank>authority</rank> |
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| 161 |
<parent_id> |
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| 162 |
<plantname> |
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| 163 |
<rank>subspecies</rank> |
|
| 164 |
<parent_id> |
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| 165 |
<plantname> |
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| 166 |
<rank>species</rank> |
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| 167 |
<plantname>$SpecificEpithet</plantname> |
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| 168 |
<parent_id> |
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| 169 |
<plantname> |
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| 170 |
<rank>genus</rank> |
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| 171 |
<plantname>$Genus</plantname> |
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| 172 |
</plantname> |
|
| 173 |
</parent_id> |
|
| 174 |
</plantname> |
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| 175 |
</parent_id> |
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| 176 |
</plantname> |
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| 177 |
</parent_id> |
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| 178 |
</plantname> |
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| 179 |
</parent_id> |
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| 180 |
</plantname> |
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| 181 |
</path> |
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| 182 |
</_simplifyPath> |
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| 183 |
</plantname_id> |
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| 184 |
</plantconcept> |
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| 185 |
</plantconcept_id> |
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| 186 |
</taxondetermination> |
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| 187 |
</taxonoccurrence> |
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| 188 |
</locationevent> |
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| 189 |
</location> |
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| 190 |
</VegBIEN> |
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| 191 |
Inserted 15 new rows into database |
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Also available in: Unified diff
Added inputs/FIA/