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Revision 4502

Added by Aaron Marcuse-Kubitza about 12 years ago

inputs/SpeciesLink/Specimen/map.csv: _alt all scientificNameAuthorship synonyms together in one _alt

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inputs/SpeciesLink/Specimen/map.csv
1 1 
"SpeciesLink[Veg+,dwc_dwcore_,dwc_curatorial_,dwc_geospatial_,http__purl_org_,dwc_terms_,conceptual_darwin_2003_1_0_]",Veg+,Comments
2 
AuthorYearOfScientificName,ScientificNameAuthor/_alt/2,
3 
ScientificNameAuthor,ScientificNameAuthor/_alt/1,
2 
AuthorYearOfScientificName,ScientificNameAuthor/_alt/3,
3 
ScientificNameAuthor,ScientificNameAuthor/_alt/2,
4 
scientificNameAuthorship,ScientificNameAuthor/_alt/1,
4 5 
DayOfYear,JulianDay/_alt/2,
5 6 
JulianDay,JulianDay/_alt/1,
6 7 
FieldNumber,recordNumber/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)
inputs/SpeciesLink/Specimen/map.full.csv
42 42 
Phylum,Phylum
43 43 
Remarks,Remarks
44 44 
ScientificName,ScientificName
45 
ScientificNameAuthor,ScientificNameAuthor/_alt/1,
46 
AuthorYearOfScientificName,ScientificNameAuthor/_alt/2,
45 
scientificNameAuthorship,ScientificNameAuthor/_alt/1,
46 
ScientificNameAuthor,ScientificNameAuthor/_alt/2,
47 
AuthorYearOfScientificName,ScientificNameAuthor/_alt/3,
47 48 
Sex,Sex
48 49 
Species,Species
49 50 
SpecificEpithet,SpecificEpithet
......
92 93 
-----"
93 94 
recordedBy,recordedBy
94 95 
scientificName,scientificName
95 
scientificNameAuthorship,scientificNameAuthorship
96 96 
sex,sex
97 97 
specificEpithet,specificEpithet
98 98 
stateProvince,stateProvince
inputs/SpeciesLink/Specimen/VegBIEN.csv
120 120 
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/surname/_namePart/last,
121 121 
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_simplifyPath:[next=parent_id]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
122 122 
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_simplifyPath:[next=parent_id]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
123 
scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_simplifyPath:[next=parent_id]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname/_alt/1",
124 
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_simplifyPath:[next=parent_id]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname/_alt/2/_alt/1",
125 
AuthorYearOfScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_simplifyPath:[next=parent_id]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname/_alt/2/_alt/2",
123 
scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_simplifyPath:[next=parent_id]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname/_alt/2/_alt/1",
124 
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_simplifyPath:[next=parent_id]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname/_alt/2/_alt/2",
125 
AuthorYearOfScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_simplifyPath:[next=parent_id]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname/_alt/2/_alt/3",
126 126 
InfraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_simplifyPath:[next=parent_id]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last",
127 127 
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_simplifyPath:[next=parent_id]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last",
128 128 
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_simplifyPath:[next=parent_id]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last",
inputs/SpeciesLink/Specimen/test.xml.ref
542 542 
                                                    <plantname>
543 543 
                                                        <_alt>
544 544 
                                                            <1>$dwc_terms_scientificNameAuthorship</1>
545 
                                                            <2>
546 
                                                                <_alt>
547 
                                                                    <1>$conceptual_darwin_2003_1_0_ScientificNameAuthor</1>
548 
                                                                    <2>$dwc_dwcore_AuthorYearOfScientificName</2>
549 
                                                                </_alt>
550 
                                                            </2>
545 
                                                            <2>$conceptual_darwin_2003_1_0_ScientificNameAuthor</2>
546 
                                                            <3>$dwc_dwcore_AuthorYearOfScientificName</3>
551 547 
                                                        </_alt>
552 548 
                                                    </plantname>
553 549 
                                                    <parent_id>

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