Revision 4554
Added by Aaron Marcuse-Kubitza almost 12 years ago
| inputs/MT/Specimen/VegBIEN.csv | ||
|---|---|---|
| 9 | 9 |
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/2, |
| 10 | 10 |
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 11 | 11 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 12 |
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value", |
|
| 12 |
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_alt/2/_map:[cultivated=t,wild=f,*=]/value",
|
|
| 13 | 13 |
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value", |
| 14 | 14 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_simplifyPath:[next=parent_id]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname", |
| 15 | 15 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_simplifyPath:[next=parent_id]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname", |
| inputs/UNCC/Specimen/VegBIEN.csv | ||
|---|---|---|
| 25 | 25 |
accession,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 26 | 26 |
collectno,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/1, |
| 27 | 27 |
SciName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2, |
| 28 |
cultivated,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values |
|
| 28 |
cultivated,"/location/locationevent/taxonoccurrence/iscultivated/_alt/2/_map:[cultivated=t,wild=f,*=]/value/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values
|
|
| 29 | 29 |
cultivated,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values |
| 30 | 30 |
SciName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_simplifyPath:[next=parent_id]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname", |
| 31 | 31 |
authors,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_simplifyPath:[next=parent_id]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname/_alt/1", |
| inputs/NCU-NCSC/Specimen/VegBIEN.csv | ||
|---|---|---|
| 16 | 16 |
SeriesName,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
| 17 | 17 |
Accession Number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 18 | 18 |
Full Taxon Name,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2, |
| 19 |
Cultivated?,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value/_map:[Yes=cultivated,No=wild]/value", |
|
| 19 |
Cultivated?,"/location/locationevent/taxonoccurrence/iscultivated/_alt/2/_map:[cultivated=t,wild=f,*=]/value/_map:[Yes=cultivated,No=wild]/value",
|
|
| 20 | 20 |
Cultivated?,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value/_map:[Yes=cultivated,No=wild]/value", |
| 21 | 21 |
Full Taxon Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_simplifyPath:[next=parent_id]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname", |
| 22 | 22 |
Barcode,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
| mappings/VegCore-VegBIEN.csv | ||
|---|---|---|
| 107 | 107 |
verbatimScientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/1, |
| 108 | 108 |
scientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2, |
| 109 | 109 |
growthForm,/location/locationevent/taxonoccurrence/growthform, |
| 110 |
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value", |
|
| 110 |
cultivated,/location/locationevent/taxonoccurrence/iscultivated/_alt/1, |
|
| 111 |
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_alt/2/_map:[cultivated=t,wild=f,*=]/value", |
|
| 111 | 112 |
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value", |
| 112 | 113 |
taxonOccurrenceID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/1, |
| 113 | 114 |
individualID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2, |
| mappings/Veg+-VegBIEN.csv | ||
|---|---|---|
| 179 | 179 |
growthForm,/location/locationevent/taxonoccurrence/growthform, |
| 180 | 180 |
habit,"/location/locationevent/taxonoccurrence/growthform/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=*]/value","According to <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.habit>, <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/SALVIAS#Habit>"
|
| 181 | 181 |
verbatimGrowthForm,"/location/locationevent/taxonoccurrence/growthform/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=*]/value","According to <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.habit>, <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/SALVIAS#Habit>"
|
| 182 |
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value", |
|
| 182 |
cultivated,/location/locationevent/taxonoccurrence/iscultivated/_alt/1, |
|
| 183 |
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_alt/2/_map:[cultivated=t,wild=f,*=]/value", |
|
| 183 | 184 |
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value", |
| 184 | 185 |
speciesInvID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/1, |
| 185 | 186 |
taxonOccurrenceID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/1, |
| mappings/for_review/VegCore-VegBIEN.csv | ||
|---|---|---|
| 107 | 107 |
verbatimScientificName,//taxonoccurrence/authortaxoncode, |
| 108 | 108 |
scientificName,//taxonoccurrence/authortaxoncode, |
| 109 | 109 |
growthForm,//taxonoccurrence/growthform, |
| 110 |
cultivated,//taxonoccurrence/iscultivated, |
|
| 110 | 111 |
establishmentMeans,//taxonoccurrence/iscultivated, |
| 111 | 112 |
establishmentMeans,//taxonoccurrence/isnative, |
| 112 | 113 |
taxonOccurrenceID,//taxonoccurrence/sourceaccessioncode, |
| mappings/VegCore.self.csv | ||
|---|---|---|
| 23 | 23 |
country,country |
| 24 | 24 |
county,county |
| 25 | 25 |
coverPercent,coverPercent |
| 26 |
cultivated,cultivated |
|
| 26 | 27 |
dateCollected,dateCollected |
| 27 | 28 |
dateIdentified,dateIdentified |
| 28 | 29 |
decimalLatitude,decimalLatitude |
| mappings/Veg+.self.csv | ||
|---|---|---|
| 45 | 45 |
country,country |
| 46 | 46 |
county,county |
| 47 | 47 |
coverPercent,coverPercent |
| 48 |
cultivated,cultivated |
|
| 48 | 49 |
dateCollected,dateCollected |
| 49 | 50 |
dateCollected/_alt,dateCollected/_alt |
| 50 | 51 |
dateIdentified,dateIdentified |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Mapped cultivated