Revision 4562
Added by Aaron Marcuse-Kubitza about 12 years ago
| mappings/for_review/VegCore-VegBIEN.csv | ||
|---|---|---|
| 50 | 50 |
communityName,//commconcept/commdescription, |
| 51 | 51 |
endDate,//locationevent/obsenddate/_*/date, |
| 52 | 52 |
eventDate,//locationevent/obsenddate/_*/date, |
| 53 |
dateCollected,//locationevent/obsenddate/_*/date, |
|
| 54 | 53 |
startDate,//locationevent/obsstartdate/_*/date, |
| 55 | 54 |
eventDate,//locationevent/obsstartdate/_*/date, |
| 56 |
dateCollected,//locationevent/obsstartdate/_*/date, |
|
| 57 | 55 |
precipitation,//locationevent/precipitation, |
| 58 | 56 |
acidity,//soilobs/acidity, |
| 59 | 57 |
baseSaturation,//soilobs/basesaturation, |
| inputs/XAL/Specimen/VegBIEN.csv | ||
|---|---|---|
| 14 | 14 |
stateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename", |
| 15 | 15 |
country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename", |
| 16 | 16 |
continentOcean,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename", |
| 17 |
dayCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 18 |
monthCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 19 |
yearCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 20 |
dayCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 21 |
monthCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 22 |
yearCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 23 | 17 |
dayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
| 24 | 18 |
monthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
| 25 | 19 |
yearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
| inputs/NY/Specimen/VegBIEN.csv | ||
|---|---|---|
| 16 | 16 |
stateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename", |
| 17 | 17 |
country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename", |
| 18 | 18 |
continentOcean,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename", |
| 19 |
dayCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 20 |
monthCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 21 |
yearCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 22 |
dayCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 23 |
monthCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 24 |
yearCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 25 | 19 |
dayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
| 26 | 20 |
monthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
| 27 | 21 |
yearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
| inputs/NY/Specimen/test.xml.ref | ||
|---|---|---|
| 159 | 159 |
</namedplace_id> |
| 160 | 160 |
</locationdetermination> |
| 161 | 161 |
<locationevent> |
| 162 |
<obsenddate> |
|
| 163 |
<_date> |
|
| 164 |
<date> |
|
| 165 |
<_dateRangeEnd> |
|
| 166 |
<value> |
|
| 167 |
<_date> |
|
| 168 |
<day> |
|
| 169 |
<_nullIf> |
|
| 170 |
<null>0</null> |
|
| 171 |
<type>float</type> |
|
| 172 |
<value>$DayCollected</value> |
|
| 173 |
</_nullIf> |
|
| 174 |
</day> |
|
| 175 |
<month> |
|
| 176 |
<_nullIf> |
|
| 177 |
<null>0</null> |
|
| 178 |
<type>float</type> |
|
| 179 |
<value>$MonthCollected</value> |
|
| 180 |
</_nullIf> |
|
| 181 |
</month> |
|
| 182 |
<year> |
|
| 183 |
<_nullIf> |
|
| 184 |
<null>0</null> |
|
| 185 |
<type>float</type> |
|
| 186 |
<value>$YearCollected</value> |
|
| 187 |
</_nullIf> |
|
| 188 |
</year> |
|
| 189 |
</_date> |
|
| 190 |
</value> |
|
| 191 |
</_dateRangeEnd> |
|
| 192 |
</date> |
|
| 193 |
</_date> |
|
| 194 |
</obsenddate> |
|
| 195 |
<obsstartdate> |
|
| 196 |
<_date> |
|
| 197 |
<date> |
|
| 198 |
<_dateRangeStart> |
|
| 199 |
<value> |
|
| 200 |
<_date> |
|
| 201 |
<day> |
|
| 202 |
<_nullIf> |
|
| 203 |
<null>0</null> |
|
| 204 |
<type>float</type> |
|
| 205 |
<value>$DayCollected</value> |
|
| 206 |
</_nullIf> |
|
| 207 |
</day> |
|
| 208 |
<month> |
|
| 209 |
<_nullIf> |
|
| 210 |
<null>0</null> |
|
| 211 |
<type>float</type> |
|
| 212 |
<value>$MonthCollected</value> |
|
| 213 |
</_nullIf> |
|
| 214 |
</month> |
|
| 215 |
<year> |
|
| 216 |
<_nullIf> |
|
| 217 |
<null>0</null> |
|
| 218 |
<type>float</type> |
|
| 219 |
<value>$YearCollected</value> |
|
| 220 |
</_nullIf> |
|
| 221 |
</year> |
|
| 222 |
</_date> |
|
| 223 |
</value> |
|
| 224 |
</_dateRangeStart> |
|
| 225 |
</date> |
|
| 226 |
</_date> |
|
| 227 |
</obsstartdate> |
|
| 228 | 162 |
<taxonoccurrence> |
| 229 | 163 |
<aggregateoccurrence> |
| 230 | 164 |
<collectiondate> |
| inputs/UNCC/Specimen/VegBIEN.csv | ||
|---|---|---|
| 4 | 4 |
county,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename", |
| 5 | 5 |
state,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename", |
| 6 | 6 |
country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename", |
| 7 |
collday,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 8 |
collmonth,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 9 |
collyear,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 10 |
collday,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 11 |
collmonth,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 12 |
collyear,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 13 | 7 |
collday,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
| 14 | 8 |
collmonth,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
| 15 | 9 |
collyear,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
| inputs/UNCC/Specimen/test.xml.ref | ||
|---|---|---|
| 34 | 34 |
</namedplace_id> |
| 35 | 35 |
</locationdetermination> |
| 36 | 36 |
<locationevent> |
| 37 |
<obsenddate> |
|
| 38 |
<_date> |
|
| 39 |
<date> |
|
| 40 |
<_dateRangeEnd> |
|
| 41 |
<value> |
|
| 42 |
<_date> |
|
| 43 |
<day> |
|
| 44 |
<_nullIf> |
|
| 45 |
<null>0</null> |
|
| 46 |
<type>float</type> |
|
| 47 |
<value>$collday</value> |
|
| 48 |
</_nullIf> |
|
| 49 |
</day> |
|
| 50 |
<month> |
|
| 51 |
<_nullIf> |
|
| 52 |
<null>0</null> |
|
| 53 |
<type>float</type> |
|
| 54 |
<value>$collmonth</value> |
|
| 55 |
</_nullIf> |
|
| 56 |
</month> |
|
| 57 |
<year> |
|
| 58 |
<_nullIf> |
|
| 59 |
<null>0</null> |
|
| 60 |
<type>float</type> |
|
| 61 |
<value>$collyear</value> |
|
| 62 |
</_nullIf> |
|
| 63 |
</year> |
|
| 64 |
</_date> |
|
| 65 |
</value> |
|
| 66 |
</_dateRangeEnd> |
|
| 67 |
</date> |
|
| 68 |
</_date> |
|
| 69 |
</obsenddate> |
|
| 70 |
<obsstartdate> |
|
| 71 |
<_date> |
|
| 72 |
<date> |
|
| 73 |
<_dateRangeStart> |
|
| 74 |
<value> |
|
| 75 |
<_date> |
|
| 76 |
<day> |
|
| 77 |
<_nullIf> |
|
| 78 |
<null>0</null> |
|
| 79 |
<type>float</type> |
|
| 80 |
<value>$collday</value> |
|
| 81 |
</_nullIf> |
|
| 82 |
</day> |
|
| 83 |
<month> |
|
| 84 |
<_nullIf> |
|
| 85 |
<null>0</null> |
|
| 86 |
<type>float</type> |
|
| 87 |
<value>$collmonth</value> |
|
| 88 |
</_nullIf> |
|
| 89 |
</month> |
|
| 90 |
<year> |
|
| 91 |
<_nullIf> |
|
| 92 |
<null>0</null> |
|
| 93 |
<type>float</type> |
|
| 94 |
<value>$collyear</value> |
|
| 95 |
</_nullIf> |
|
| 96 |
</year> |
|
| 97 |
</_date> |
|
| 98 |
</value> |
|
| 99 |
</_dateRangeStart> |
|
| 100 |
</date> |
|
| 101 |
</_date> |
|
| 102 |
</obsstartdate> |
|
| 103 | 37 |
<taxonoccurrence> |
| 104 | 38 |
<aggregateoccurrence> |
| 105 | 39 |
<collectiondate> |
| inputs/REMIB/Specimen/VegBIEN.csv | ||
|---|---|---|
| 6 | 6 |
county,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename", |
| 7 | 7 |
state,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename", |
| 8 | 8 |
country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename", |
| 9 |
coll_day,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 10 |
coll_month,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 11 |
coll_year,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 12 |
coll_day,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 13 |
coll_month,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 14 |
coll_year,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 15 | 9 |
coll_day,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
| 16 | 10 |
coll_month,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
| 17 | 11 |
coll_year,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
| inputs/REMIB/Specimen/test.xml.ref | ||
|---|---|---|
| 48 | 48 |
</namedplace_id> |
| 49 | 49 |
</locationdetermination> |
| 50 | 50 |
<locationevent> |
| 51 |
<obsenddate> |
|
| 52 |
<_date> |
|
| 53 |
<date> |
|
| 54 |
<_dateRangeEnd> |
|
| 55 |
<value> |
|
| 56 |
<_date> |
|
| 57 |
<day> |
|
| 58 |
<_nullIf> |
|
| 59 |
<null>0</null> |
|
| 60 |
<type>float</type> |
|
| 61 |
<value>$coll_day</value> |
|
| 62 |
</_nullIf> |
|
| 63 |
</day> |
|
| 64 |
<month> |
|
| 65 |
<_nullIf> |
|
| 66 |
<null>0</null> |
|
| 67 |
<type>float</type> |
|
| 68 |
<value>$coll_month</value> |
|
| 69 |
</_nullIf> |
|
| 70 |
</month> |
|
| 71 |
<year> |
|
| 72 |
<_nullIf> |
|
| 73 |
<null>0</null> |
|
| 74 |
<type>float</type> |
|
| 75 |
<value>$coll_year</value> |
|
| 76 |
</_nullIf> |
|
| 77 |
</year> |
|
| 78 |
</_date> |
|
| 79 |
</value> |
|
| 80 |
</_dateRangeEnd> |
|
| 81 |
</date> |
|
| 82 |
</_date> |
|
| 83 |
</obsenddate> |
|
| 84 |
<obsstartdate> |
|
| 85 |
<_date> |
|
| 86 |
<date> |
|
| 87 |
<_dateRangeStart> |
|
| 88 |
<value> |
|
| 89 |
<_date> |
|
| 90 |
<day> |
|
| 91 |
<_nullIf> |
|
| 92 |
<null>0</null> |
|
| 93 |
<type>float</type> |
|
| 94 |
<value>$coll_day</value> |
|
| 95 |
</_nullIf> |
|
| 96 |
</day> |
|
| 97 |
<month> |
|
| 98 |
<_nullIf> |
|
| 99 |
<null>0</null> |
|
| 100 |
<type>float</type> |
|
| 101 |
<value>$coll_month</value> |
|
| 102 |
</_nullIf> |
|
| 103 |
</month> |
|
| 104 |
<year> |
|
| 105 |
<_nullIf> |
|
| 106 |
<null>0</null> |
|
| 107 |
<type>float</type> |
|
| 108 |
<value>$coll_year</value> |
|
| 109 |
</_nullIf> |
|
| 110 |
</year> |
|
| 111 |
</_date> |
|
| 112 |
</value> |
|
| 113 |
</_dateRangeStart> |
|
| 114 |
</date> |
|
| 115 |
</_date> |
|
| 116 |
</obsstartdate> |
|
| 117 | 51 |
<taxonoccurrence> |
| 118 | 52 |
<aggregateoccurrence> |
| 119 | 53 |
<collectiondate> |
| inputs/FIA/Organism/VegBIEN.csv | ||
|---|---|---|
| 7 | 7 |
county,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename", |
| 8 | 8 |
stateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename", |
| 9 | 9 |
PlotCD,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode", |
| 10 |
MeasDay,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 11 |
MeasMon,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 12 |
MeasYear,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 13 |
MeasDay,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 14 |
MeasMon,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 15 |
MeasYear,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 16 | 10 |
MeasDay,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
| 17 | 11 |
MeasMon,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
| 18 | 12 |
MeasYear,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
| inputs/FIA/Organism/test.xml.ref | ||
|---|---|---|
| 37 | 37 |
</namedplace_id> |
| 38 | 38 |
</locationdetermination> |
| 39 | 39 |
<locationevent> |
| 40 |
<obsenddate> |
|
| 41 |
<_date> |
|
| 42 |
<date> |
|
| 43 |
<_dateRangeEnd> |
|
| 44 |
<value> |
|
| 45 |
<_date> |
|
| 46 |
<day> |
|
| 47 |
<_nullIf> |
|
| 48 |
<null>0</null> |
|
| 49 |
<type>float</type> |
|
| 50 |
<value>$MeasDay</value> |
|
| 51 |
</_nullIf> |
|
| 52 |
</day> |
|
| 53 |
<month> |
|
| 54 |
<_nullIf> |
|
| 55 |
<null>0</null> |
|
| 56 |
<type>float</type> |
|
| 57 |
<value>$MeasMon</value> |
|
| 58 |
</_nullIf> |
|
| 59 |
</month> |
|
| 60 |
<year> |
|
| 61 |
<_nullIf> |
|
| 62 |
<null>0</null> |
|
| 63 |
<type>float</type> |
|
| 64 |
<value>$MeasYear</value> |
|
| 65 |
</_nullIf> |
|
| 66 |
</year> |
|
| 67 |
</_date> |
|
| 68 |
</value> |
|
| 69 |
</_dateRangeEnd> |
|
| 70 |
</date> |
|
| 71 |
</_date> |
|
| 72 |
</obsenddate> |
|
| 73 |
<obsstartdate> |
|
| 74 |
<_date> |
|
| 75 |
<date> |
|
| 76 |
<_dateRangeStart> |
|
| 77 |
<value> |
|
| 78 |
<_date> |
|
| 79 |
<day> |
|
| 80 |
<_nullIf> |
|
| 81 |
<null>0</null> |
|
| 82 |
<type>float</type> |
|
| 83 |
<value>$MeasDay</value> |
|
| 84 |
</_nullIf> |
|
| 85 |
</day> |
|
| 86 |
<month> |
|
| 87 |
<_nullIf> |
|
| 88 |
<null>0</null> |
|
| 89 |
<type>float</type> |
|
| 90 |
<value>$MeasMon</value> |
|
| 91 |
</_nullIf> |
|
| 92 |
</month> |
|
| 93 |
<year> |
|
| 94 |
<_nullIf> |
|
| 95 |
<null>0</null> |
|
| 96 |
<type>float</type> |
|
| 97 |
<value>$MeasYear</value> |
|
| 98 |
</_nullIf> |
|
| 99 |
</year> |
|
| 100 |
</_date> |
|
| 101 |
</value> |
|
| 102 |
</_dateRangeStart> |
|
| 103 |
</date> |
|
| 104 |
</_date> |
|
| 105 |
</obsstartdate> |
|
| 106 | 40 |
<taxonoccurrence> |
| 107 | 41 |
<aggregateoccurrence> |
| 108 | 42 |
<collectiondate> |
| inputs/U/Specimen/VegBIEN.csv | ||
|---|---|---|
| 4 | 4 |
Lat,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value", |
| 5 | 5 |
Long,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value", |
| 6 | 6 |
country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename", |
| 7 |
Colldd,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 8 |
Collmm,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 9 |
Collyy,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 10 |
Colldd,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 11 |
Collmm,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 12 |
Collyy,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 13 | 7 |
Colldd,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
| 14 | 8 |
Collmm,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
| 15 | 9 |
Collyy,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
| inputs/U/Specimen/test.xml.ref | ||
|---|---|---|
| 46 | 46 |
</namedplace_id> |
| 47 | 47 |
</locationdetermination> |
| 48 | 48 |
<locationevent> |
| 49 |
<obsenddate> |
|
| 50 |
<_date> |
|
| 51 |
<date> |
|
| 52 |
<_dateRangeEnd> |
|
| 53 |
<value> |
|
| 54 |
<_date> |
|
| 55 |
<day> |
|
| 56 |
<_nullIf> |
|
| 57 |
<null>0</null> |
|
| 58 |
<type>float</type> |
|
| 59 |
<value>$Colldd</value> |
|
| 60 |
</_nullIf> |
|
| 61 |
</day> |
|
| 62 |
<month> |
|
| 63 |
<_nullIf> |
|
| 64 |
<null>0</null> |
|
| 65 |
<type>float</type> |
|
| 66 |
<value>$Collmm</value> |
|
| 67 |
</_nullIf> |
|
| 68 |
</month> |
|
| 69 |
<year> |
|
| 70 |
<_nullIf> |
|
| 71 |
<null>0</null> |
|
| 72 |
<type>float</type> |
|
| 73 |
<value>$Collyy</value> |
|
| 74 |
</_nullIf> |
|
| 75 |
</year> |
|
| 76 |
</_date> |
|
| 77 |
</value> |
|
| 78 |
</_dateRangeEnd> |
|
| 79 |
</date> |
|
| 80 |
</_date> |
|
| 81 |
</obsenddate> |
|
| 82 |
<obsstartdate> |
|
| 83 |
<_date> |
|
| 84 |
<date> |
|
| 85 |
<_dateRangeStart> |
|
| 86 |
<value> |
|
| 87 |
<_date> |
|
| 88 |
<day> |
|
| 89 |
<_nullIf> |
|
| 90 |
<null>0</null> |
|
| 91 |
<type>float</type> |
|
| 92 |
<value>$Colldd</value> |
|
| 93 |
</_nullIf> |
|
| 94 |
</day> |
|
| 95 |
<month> |
|
| 96 |
<_nullIf> |
|
| 97 |
<null>0</null> |
|
| 98 |
<type>float</type> |
|
| 99 |
<value>$Collmm</value> |
|
| 100 |
</_nullIf> |
|
| 101 |
</month> |
|
| 102 |
<year> |
|
| 103 |
<_nullIf> |
|
| 104 |
<null>0</null> |
|
| 105 |
<type>float</type> |
|
| 106 |
<value>$Collyy</value> |
|
| 107 |
</_nullIf> |
|
| 108 |
</year> |
|
| 109 |
</_date> |
|
| 110 |
</value> |
|
| 111 |
</_dateRangeStart> |
|
| 112 |
</date> |
|
| 113 |
</_date> |
|
| 114 |
</obsstartdate> |
|
| 115 | 49 |
<taxonoccurrence> |
| 116 | 50 |
<aggregateoccurrence> |
| 117 | 51 |
<collectiondate> |
| inputs/ARIZ/Specimen/VegBIEN.csv | ||
|---|---|---|
| 20 | 20 |
stateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename", |
| 21 | 21 |
country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename", |
| 22 | 22 |
continentOcean,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename", |
| 23 |
VerbatimCollectingDate,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/0, |
|
| 24 |
dayCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 25 |
monthCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 26 |
yearCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 27 |
VerbatimCollectingDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/0, |
|
| 28 |
dayCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 29 |
monthCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 30 |
yearCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 31 | 23 |
VerbatimCollectingDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/0, |
| 32 | 24 |
dayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
| 33 | 25 |
monthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
| inputs/ARIZ/Specimen/test.xml.ref | ||
|---|---|---|
| 181 | 181 |
</namedplace_id> |
| 182 | 182 |
</locationdetermination> |
| 183 | 183 |
<locationevent> |
| 184 |
<obsenddate> |
|
| 185 |
<_date> |
|
| 186 |
<date> |
|
| 187 |
<_dateRangeEnd> |
|
| 188 |
<value> |
|
| 189 |
<_alt> |
|
| 190 |
<0>$VerbatimCollectingDate</0> |
|
| 191 |
<1> |
|
| 192 |
<_date> |
|
| 193 |
<day> |
|
| 194 |
<_nullIf> |
|
| 195 |
<null>0</null> |
|
| 196 |
<type>float</type> |
|
| 197 |
<value>$DayCollected</value> |
|
| 198 |
</_nullIf> |
|
| 199 |
</day> |
|
| 200 |
<month> |
|
| 201 |
<_nullIf> |
|
| 202 |
<null>0</null> |
|
| 203 |
<type>float</type> |
|
| 204 |
<value>$MonthCollected</value> |
|
| 205 |
</_nullIf> |
|
| 206 |
</month> |
|
| 207 |
<year> |
|
| 208 |
<_nullIf> |
|
| 209 |
<null>0</null> |
|
| 210 |
<type>float</type> |
|
| 211 |
<value>$YearCollected</value> |
|
| 212 |
</_nullIf> |
|
| 213 |
</year> |
|
| 214 |
</_date> |
|
| 215 |
</1> |
|
| 216 |
</_alt> |
|
| 217 |
</value> |
|
| 218 |
</_dateRangeEnd> |
|
| 219 |
</date> |
|
| 220 |
</_date> |
|
| 221 |
</obsenddate> |
|
| 222 |
<obsstartdate> |
|
| 223 |
<_date> |
|
| 224 |
<date> |
|
| 225 |
<_dateRangeStart> |
|
| 226 |
<value> |
|
| 227 |
<_alt> |
|
| 228 |
<0>$VerbatimCollectingDate</0> |
|
| 229 |
<1> |
|
| 230 |
<_date> |
|
| 231 |
<day> |
|
| 232 |
<_nullIf> |
|
| 233 |
<null>0</null> |
|
| 234 |
<type>float</type> |
|
| 235 |
<value>$DayCollected</value> |
|
| 236 |
</_nullIf> |
|
| 237 |
</day> |
|
| 238 |
<month> |
|
| 239 |
<_nullIf> |
|
| 240 |
<null>0</null> |
|
| 241 |
<type>float</type> |
|
| 242 |
<value>$MonthCollected</value> |
|
| 243 |
</_nullIf> |
|
| 244 |
</month> |
|
| 245 |
<year> |
|
| 246 |
<_nullIf> |
|
| 247 |
<null>0</null> |
|
| 248 |
<type>float</type> |
|
| 249 |
<value>$YearCollected</value> |
|
| 250 |
</_nullIf> |
|
| 251 |
</year> |
|
| 252 |
</_date> |
|
| 253 |
</1> |
|
| 254 |
</_alt> |
|
| 255 |
</value> |
|
| 256 |
</_dateRangeStart> |
|
| 257 |
</date> |
|
| 258 |
</_date> |
|
| 259 |
</obsstartdate> |
|
| 260 | 184 |
<taxonoccurrence> |
| 261 | 185 |
<aggregateoccurrence> |
| 262 | 186 |
<collectiondate> |
| inputs/GBIF/Specimen/VegBIEN.csv | ||
|---|---|---|
| 14 | 14 |
county,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename", |
| 15 | 15 |
stateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename", |
| 16 | 16 |
country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename", |
| 17 |
LatestDateCollected,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/2, |
|
| 18 |
LatestDateCollected,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/2, |
|
| 19 | 17 |
LatestDateCollected,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/2, |
| 20 | 18 |
CatalogNO,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
| 21 | 19 |
CollectionCD,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
| inputs/GBIF/Specimen/test.xml.ref | ||
|---|---|---|
| 153 | 153 |
</namedplace_id> |
| 154 | 154 |
</locationdetermination> |
| 155 | 155 |
<locationevent> |
| 156 |
<obsenddate><_date><date><_dateRangeEnd><value>$LatestDateCollected</value></_dateRangeEnd></date></_date></obsenddate> |
|
| 157 |
<obsstartdate><_date><date><_dateRangeStart><value>$LatestDateCollected</value></_dateRangeStart></date></_date></obsstartdate> |
|
| 158 | 156 |
<taxonoccurrence> |
| 159 | 157 |
<aggregateoccurrence> |
| 160 | 158 |
<collectiondate><_date><date>$LatestDateCollected</date></_date></collectiondate> |
| inputs/NCU-NCSC/Specimen/VegBIEN.csv | ||
|---|---|---|
| 9 | 9 |
county,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename", |
| 10 | 10 |
state,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename", |
| 11 | 11 |
country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename", |
| 12 |
Collect Date,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/3, |
|
| 13 |
Collect Date,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/3, |
|
| 14 | 12 |
Collect Date,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/3, |
| 15 | 13 |
Barcode,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
| 16 | 14 |
SeriesName,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
| inputs/NCU-NCSC/Specimen/test.xml.ref | ||
|---|---|---|
| 70 | 70 |
</namedplace_id> |
| 71 | 71 |
</locationdetermination> |
| 72 | 72 |
<locationevent> |
| 73 |
<obsenddate><_date><date><_dateRangeEnd><value>$Collect Date</value></_dateRangeEnd></date></_date></obsenddate> |
|
| 74 |
<obsstartdate><_date><date><_dateRangeStart><value>$Collect Date</value></_dateRangeStart></date></_date></obsstartdate> |
|
| 75 | 73 |
<taxonoccurrence> |
| 76 | 74 |
<aggregateoccurrence> |
| 77 | 75 |
<collectiondate><_date><date>$Collect Date</date></_date></collectiondate> |
| inputs/SpeciesLink/Specimen/VegBIEN.csv | ||
|---|---|---|
| 28 | 28 |
country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename", |
| 29 | 29 |
continent,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename", |
| 30 | 30 |
continentOcean,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename", |
| 31 |
dayCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 32 |
monthCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 33 |
yearCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 34 |
dayCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 35 |
monthCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 36 |
yearCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 37 | 31 |
dayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
| 38 | 32 |
monthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
| 39 | 33 |
yearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
| inputs/SpeciesLink/Specimen/test.xml.ref | ||
|---|---|---|
| 274 | 274 |
</namedplace_id> |
| 275 | 275 |
</locationdetermination> |
| 276 | 276 |
<locationevent> |
| 277 |
<obsenddate> |
|
| 278 |
<_date> |
|
| 279 |
<date> |
|
| 280 |
<_dateRangeEnd> |
|
| 281 |
<value> |
|
| 282 |
<_date> |
|
| 283 |
<day> |
|
| 284 |
<_nullIf> |
|
| 285 |
<null>0</null> |
|
| 286 |
<type>float</type> |
|
| 287 |
<value>$conceptual_darwin_2003_1_0_DayCollected</value> |
|
| 288 |
</_nullIf> |
|
| 289 |
</day> |
|
| 290 |
<month> |
|
| 291 |
<_nullIf> |
|
| 292 |
<null>0</null> |
|
| 293 |
<type>float</type> |
|
| 294 |
<value>$conceptual_darwin_2003_1_0_MonthCollected</value> |
|
| 295 |
</_nullIf> |
|
| 296 |
</month> |
|
| 297 |
<year> |
|
| 298 |
<_nullIf> |
|
| 299 |
<null>0</null> |
|
| 300 |
<type>float</type> |
|
| 301 |
<value>$conceptual_darwin_2003_1_0_YearCollected</value> |
|
| 302 |
</_nullIf> |
|
| 303 |
</year> |
|
| 304 |
</_date> |
|
| 305 |
</value> |
|
| 306 |
</_dateRangeEnd> |
|
| 307 |
</date> |
|
| 308 |
</_date> |
|
| 309 |
</obsenddate> |
|
| 310 |
<obsstartdate> |
|
| 311 |
<_date> |
|
| 312 |
<date> |
|
| 313 |
<_dateRangeStart> |
|
| 314 |
<value> |
|
| 315 |
<_date> |
|
| 316 |
<day> |
|
| 317 |
<_nullIf> |
|
| 318 |
<null>0</null> |
|
| 319 |
<type>float</type> |
|
| 320 |
<value>$conceptual_darwin_2003_1_0_DayCollected</value> |
|
| 321 |
</_nullIf> |
|
| 322 |
</day> |
|
| 323 |
<month> |
|
| 324 |
<_nullIf> |
|
| 325 |
<null>0</null> |
|
| 326 |
<type>float</type> |
|
| 327 |
<value>$conceptual_darwin_2003_1_0_MonthCollected</value> |
|
| 328 |
</_nullIf> |
|
| 329 |
</month> |
|
| 330 |
<year> |
|
| 331 |
<_nullIf> |
|
| 332 |
<null>0</null> |
|
| 333 |
<type>float</type> |
|
| 334 |
<value>$conceptual_darwin_2003_1_0_YearCollected</value> |
|
| 335 |
</_nullIf> |
|
| 336 |
</year> |
|
| 337 |
</_date> |
|
| 338 |
</value> |
|
| 339 |
</_dateRangeStart> |
|
| 340 |
</date> |
|
| 341 |
</_date> |
|
| 342 |
</obsstartdate> |
|
| 343 | 277 |
<taxonoccurrence> |
| 344 | 278 |
<aggregateoccurrence> |
| 345 | 279 |
<collectiondate> |
| inputs/MO/Specimen/VegBIEN.csv | ||
|---|---|---|
| 13 | 13 |
stateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename", |
| 14 | 14 |
country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename", |
| 15 | 15 |
continentOcean,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename", |
| 16 |
dayCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 17 |
monthCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 18 |
yearCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 19 |
dayCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 20 |
monthCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 21 |
yearCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 22 | 16 |
dayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
| 23 | 17 |
monthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
| 24 | 18 |
yearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
| inputs/MO/Specimen/test.xml.ref | ||
|---|---|---|
| 137 | 137 |
</namedplace_id> |
| 138 | 138 |
</locationdetermination> |
| 139 | 139 |
<locationevent> |
| 140 |
<obsenddate> |
|
| 141 |
<_date> |
|
| 142 |
<date> |
|
| 143 |
<_dateRangeEnd> |
|
| 144 |
<value> |
|
| 145 |
<_date> |
|
| 146 |
<day> |
|
| 147 |
<_nullIf> |
|
| 148 |
<null>0</null> |
|
| 149 |
<type>float</type> |
|
| 150 |
<value>$DayCollected</value> |
|
| 151 |
</_nullIf> |
|
| 152 |
</day> |
|
| 153 |
<month> |
|
| 154 |
<_nullIf> |
|
| 155 |
<null>0</null> |
|
| 156 |
<type>float</type> |
|
| 157 |
<value>$MonthCollected</value> |
|
| 158 |
</_nullIf> |
|
| 159 |
</month> |
|
| 160 |
<year> |
|
| 161 |
<_nullIf> |
|
| 162 |
<null>0</null> |
|
| 163 |
<type>float</type> |
|
| 164 |
<value>$YearCollected</value> |
|
| 165 |
</_nullIf> |
|
| 166 |
</year> |
|
| 167 |
</_date> |
|
| 168 |
</value> |
|
| 169 |
</_dateRangeEnd> |
|
| 170 |
</date> |
|
| 171 |
</_date> |
|
| 172 |
</obsenddate> |
|
| 173 |
<obsstartdate> |
|
| 174 |
<_date> |
|
| 175 |
<date> |
|
| 176 |
<_dateRangeStart> |
|
| 177 |
<value> |
|
| 178 |
<_date> |
|
| 179 |
<day> |
|
| 180 |
<_nullIf> |
|
| 181 |
<null>0</null> |
|
| 182 |
<type>float</type> |
|
| 183 |
<value>$DayCollected</value> |
|
| 184 |
</_nullIf> |
|
| 185 |
</day> |
|
| 186 |
<month> |
|
| 187 |
<_nullIf> |
|
| 188 |
<null>0</null> |
|
| 189 |
<type>float</type> |
|
| 190 |
<value>$MonthCollected</value> |
|
| 191 |
</_nullIf> |
|
| 192 |
</month> |
|
| 193 |
<year> |
|
| 194 |
<_nullIf> |
|
| 195 |
<null>0</null> |
|
| 196 |
<type>float</type> |
|
| 197 |
<value>$YearCollected</value> |
|
| 198 |
</_nullIf> |
|
| 199 |
</year> |
|
| 200 |
</_date> |
|
| 201 |
</value> |
|
| 202 |
</_dateRangeStart> |
|
| 203 |
</date> |
|
| 204 |
</_date> |
|
| 205 |
</obsstartdate> |
|
| 206 | 140 |
<taxonoccurrence> |
| 207 | 141 |
<aggregateoccurrence> |
| 208 | 142 |
<collectiondate> |
| inputs/VegBank/taxonobservation_/VegBIEN.csv | ||
|---|---|---|
| 3 | 3 |
observation_id,"/location/locationevent/_if[@name=""if subplot""]/else/sourceaccessioncode", |
| 4 | 4 |
observation_id,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/cond/_exists/_first/1", |
| 5 | 5 |
observation_id,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/sourceaccessioncode", |
| 6 |
collectiondate,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/3, |
|
| 7 |
collectiondate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/3, |
|
| 8 | 6 |
collectiondate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/3, |
| 9 | 7 |
notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
| 10 | 8 |
museumaccessionnumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
| inputs/VegBank/taxonobservation_/test.xml.ref | ||
|---|---|---|
| 4 | 4 |
<authorlocationcode>$museumaccessionnumber</authorlocationcode> |
| 5 | 5 |
<locationevent> |
| 6 | 6 |
<sourceaccessioncode>$observation_id</sourceaccessioncode> |
| 7 |
<obsenddate><_date><date><_dateRangeEnd><value>$collectiondate</value></_dateRangeEnd></date></_date></obsenddate> |
|
| 8 |
<obsstartdate><_date><date><_dateRangeStart><value>$collectiondate</value></_dateRangeStart></date></_date></obsstartdate> |
|
| 9 | 7 |
<taxonoccurrence> |
| 10 | 8 |
<aggregateoccurrence> |
| 11 | 9 |
<collectiondate><_date><date>$collectiondate</date></_date></collectiondate> |
| mappings/VegCore-VegBIEN.csv | ||
|---|---|---|
| 50 | 50 |
communityName,/location/locationevent/commclass/commdetermination/*_id/commconcept/commdescription, |
| 51 | 51 |
endDate,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value, |
| 52 | 52 |
eventDate,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1, |
| 53 |
dateCollected,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2, |
|
| 54 | 53 |
startDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value, |
| 55 | 54 |
eventDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1, |
| 56 |
dateCollected,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2, |
|
| 57 | 55 |
precipitation,/location/locationevent/precipitation, |
| 58 | 56 |
acidity,/location/locationevent/soilobs/acidity, |
| 59 | 57 |
baseSaturation,/location/locationevent/soilobs/basesaturation, |
| mappings/Veg+-VegBIEN.csv | ||
|---|---|---|
| 91 | 91 |
endDate,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value, |
| 92 | 92 |
plotEventEndDate,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value, |
| 93 | 93 |
eventDate,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1, |
| 94 |
dateCollected/_alt,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt, |
|
| 95 |
dayCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 96 |
monthCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 97 |
yearCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 98 |
dateCollected,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/2, |
|
| 99 |
collectedDate,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/3, |
|
| 100 | 94 |
plotEventStartDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value, |
| 101 | 95 |
startDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value, |
| 102 | 96 |
eventDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1, |
| 103 |
dateCollected/_alt,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt, |
|
| 104 |
dayCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 105 |
monthCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 106 |
yearCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 107 |
dateCollected,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/2, |
|
| 108 |
collectedDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/3, |
|
| 109 | 97 |
precipitation,/location/locationevent/precipitation, |
| 110 | 98 |
acidity,/location/locationevent/soilobs/acidity, |
| 111 | 99 |
baseSaturation,/location/locationevent/soilobs/basesaturation, |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Don't map dateCollected to locationevent.obsstartdate/obsenddate because this is the date the specimen was collected, not the date (range) of the entire collection event. This distinction may not be meaningful for specimens data, but VegBIEN should reflect what the data provider designated. This also reduces the number of dateCollected-related mappings needed for any dateCollected-related field, such as year/month/dayCollected.