Revision 4574
Added by Aaron Marcuse-Kubitza about 12 years ago
| inputs/NY/Specimen/VegBIEN.csv | ||
|---|---|---|
| 22 | 22 |
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
| 23 | 23 |
Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_merge/1, |
| 24 | 24 |
PlantFungusDescription,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_merge/2/_label[label=""plant fungus""]/value", |
| 25 |
FieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/2,Usage inconsistent with DwC definition
|
|
| 25 |
FieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber,Usage inconsistent with DwC definition |
|
| 26 | 26 |
sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
| 27 | 27 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
| 28 | 28 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
| 29 | 29 |
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 30 | 30 |
UniqueNYInternalRecordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 31 |
FieldNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/2,Usage inconsistent with DwC definition
|
|
| 31 |
FieldNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1,Usage inconsistent with DwC definition |
|
| 32 | 32 |
scientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2, |
| 33 | 33 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first, |
| 34 | 34 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/middlename/_namePart/middle, |
| inputs/Madidi/Organism/VegBIEN.csv | ||
|---|---|---|
| 12 | 12 |
Inventory name,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/authorlocationcode", |
| 13 | 13 |
Inventory code,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode", |
| 14 | 14 |
Observations,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
| 15 |
Tree number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/2,
|
|
| 15 |
Tree number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber, |
|
| 16 | 16 |
Specimen,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
| 17 | 17 |
Trunk,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/authorstemcode, |
| 18 | 18 |
Liana presence,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tablerecord_id]/definedvalue", |
| ... | ... | |
| 21 | 21 |
Tag number,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[""""/iscurrent/_alt/2=true]/tag",Quotes sort it before tag2 |
| 22 | 22 |
Subplot X,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/xposition, |
| 23 | 23 |
Subplot Y,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition, |
| 24 |
Tree number,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/2,
|
|
| 24 |
Tree number,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1, |
|
| 25 | 25 |
Specie+autor,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2, |
| 26 | 26 |
habit,"/location/locationevent/taxonoccurrence/growthform/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=*]/value","According to <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.habit>, <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/SALVIAS#Habit>"
|
| 27 | 27 |
Determined by,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first, |
| inputs/UNCC/Specimen/VegBIEN.csv | ||
|---|---|---|
| 14 | 14 |
campus,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_merge/5/_label[label=""campus""]/value", |
| 15 | 15 |
loanto,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_merge/6/_label[label=""loaned to""]/value", |
| 16 | 16 |
inorout,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_merge/7/_label[label=""in or out""]/value", |
| 17 |
collectno,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/1,
|
|
| 17 |
collectno,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber, |
|
| 18 | 18 |
herbarium,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 19 | 19 |
accession,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 20 |
collectno,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/1,
|
|
| 20 |
collectno,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1, |
|
| 21 | 21 |
SciName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2, |
| 22 | 22 |
cultivated,/location/locationevent/taxonoccurrence/iscultivated/_alt/1,Ignore other values |
| 23 | 23 |
SciName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_simplifyPath:[next=parent_id]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname", |
| inputs/ACAD/Specimen/VegBIEN.csv | ||
|---|---|---|
| 13 | 13 |
continent,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename", |
| 14 | 14 |
eventDate,/location/locationevent/obsenddate/_*/date/_alt/2/_dateRangeEnd/value, |
| 15 | 15 |
eventDate,/location/locationevent/obsstartdate/_*/date/_alt/2/_dateRangeStart/value, |
| 16 |
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/2,
|
|
| 16 |
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber, |
|
| 17 | 17 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
| 18 | 18 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
| 19 | 19 |
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/2, |
| 20 | 20 |
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 21 | 21 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 22 |
recordNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/2,
|
|
| 22 |
recordNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1, |
|
| 23 | 23 |
scientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2, |
| 24 | 24 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first, |
| 25 | 25 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/middlename/_namePart/middle, |
| inputs/SALVIAS-CSV/Organism/VegBIEN.csv | ||
|---|---|---|
| 32 | 32 |
cover_percent,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover, |
| 33 | 33 |
census_no,"/location/locationevent/taxonoccurrence/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue","Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not." |
| 34 | 34 |
intercept_cm,/location/locationevent/taxonoccurrence/aggregateoccurrence/linecover,"Brad: This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance." |
| 35 |
individual_code,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/2,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
|
|
| 35 |
individual_code,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot." |
|
| 36 | 36 |
OBSERVATION_ID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later." |
| 37 | 37 |
det_type,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen." |
| 38 | 38 |
coll_number,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else/_alt/1",Brad: Map instead as for voucher_string |
| ... | ... | |
| 53 | 53 |
stem_tag2,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[iscurrent=true]:[../stemtag?[iscurrent/_alt/2=true]/iscurrent/_alt/1=false]/tag/_alt/2,Brad: see above |
| 54 | 54 |
x_position,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/xposition,"Brad: These are important, fundamental values of many tree plots" |
| 55 | 55 |
y_position,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition,Brad: See comment above for x_position |
| 56 |
individual_code,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/2,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
|
|
| 56 |
individual_code,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot." |
|
| 57 | 57 |
habit,"/location/locationevent/taxonoccurrence/growthform/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=*]/value","Brad: This is growth form (tree, shrub, herb, etc.). It is an observation of a trait.; According to <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.habit>, <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/SALVIAS#Habit>"
|
| 58 | 58 |
OBSERVATION_ID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later." |
| 59 | 59 |
specific_authority,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_simplifyPath:[next=parent_id]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",Brad: This is the author of the scientificName. |
| inputs/SALVIAS/plotObservations/VegBIEN.csv | ||
|---|---|---|
| 33 | 33 |
census_no,"/location/locationevent/taxonoccurrence/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue","Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not." |
| 34 | 34 |
intercept_cm,/location/locationevent/taxonoccurrence/aggregateoccurrence/linecover,"Brad: This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance." |
| 35 | 35 |
Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
| 36 |
Ind,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/2,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
|
|
| 36 |
Ind,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot." |
|
| 37 | 37 |
PlotObsID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later." |
| 38 | 38 |
DetType,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen." |
| 39 | 39 |
coll_number,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else/_alt/1",Brad: Map instead as for voucher_string |
| ... | ... | |
| 48 | 48 |
tag2,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[iscurrent=true]:[../stemtag?[iscurrent/_alt/2=true]/iscurrent/_alt/1=false]/tag,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other." |
| 49 | 49 |
x_position,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/xposition,"Brad: These are important, fundamental values of many tree plots" |
| 50 | 50 |
y_position,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition,Brad: See comment above for x_position |
| 51 |
Ind,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/2,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
|
|
| 51 |
Ind,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot." |
|
| 52 | 52 |
Habit,"/location/locationevent/taxonoccurrence/growthform/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=*]/value","Brad: This is growth form (tree, shrub, herb, etc.). It is an observation of a trait.; According to <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.habit>, <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/SALVIAS#Habit>"
|
| 53 | 53 |
PlotObsID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later." |
| 54 | 54 |
auth,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_simplifyPath:[next=parent_id]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",Brad: This is the author of the scientificName. |
| inputs/U/Specimen/VegBIEN.csv | ||
|---|---|---|
| 8 | 8 |
Collmm,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
| 9 | 9 |
Collyy,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
| 10 | 10 |
notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
| 11 |
Number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/2,
|
|
| 11 |
Number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber, |
|
| 12 | 12 |
Barcode,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
| 13 | 13 |
ID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 14 |
Number,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/2,
|
|
| 14 |
Number,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1, |
|
| 15 | 15 |
Detby,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first, |
| 16 | 16 |
Detby,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/middlename/_namePart/middle, |
| 17 | 17 |
Detby,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/surname/_namePart/last, |
| inputs/ARIZ/Specimen/VegBIEN.csv | ||
|---|---|---|
| 26 | 26 |
yearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
| 27 | 27 |
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
| 28 | 28 |
fieldNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
| 29 |
collectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/1,
|
|
| 29 |
collectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber, |
|
| 30 | 30 |
sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
| 31 | 31 |
CatalogNumberNumeric,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else/_alt/1", |
| 32 | 32 |
CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else/_alt/2",Don't overwrite CatalogNumberNumeric |
| 33 | 33 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
| 34 | 34 |
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 35 | 35 |
globalUniqueIdentifier,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 36 |
collectorNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/1,
|
|
| 36 |
collectorNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1, |
|
| 37 | 37 |
ScientificNameAuthor,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2/_alt/1,Contains the binomial in addition to the authority |
| 38 | 38 |
ScientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2/_alt/2, |
| 39 | 39 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first, |
| inputs/MO/Specimen/VegBIEN.csv | ||
|---|---|---|
| 19 | 19 |
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
| 20 | 20 |
convertednotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
| 21 | 21 |
notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
| 22 |
collectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/1,
|
|
| 22 |
collectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber, |
|
| 23 | 23 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
| 24 | 24 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
| 25 | 25 |
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 26 |
collectorNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/1,
|
|
| 26 |
collectorNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1, |
|
| 27 | 27 |
scientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2, |
| 28 | 28 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first, |
| 29 | 29 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/middlename/_namePart/middle, |
| mappings/Veg+-VegBIEN.csv | ||
|---|---|---|
| 123 | 123 |
volumeCanopy,/location/locationevent/taxonoccurrence/aggregateoccurrence/linecover, |
| 124 | 124 |
fieldNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
| 125 | 125 |
notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
| 126 |
recordNumber/_alt,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt, |
|
| 127 |
collectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/1, |
|
| 128 |
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/2, |
|
| 129 |
authorPlantCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/3, |
|
| 126 |
authorPlantCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber, |
|
| 127 |
collectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber, |
|
| 128 |
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber, |
|
| 130 | 129 |
sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
| 131 | 130 |
individualID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
| 132 | 131 |
voucherType,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left", |
| ... | ... | |
| 157 | 156 |
relativePlotX,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/xposition, |
| 158 | 157 |
organismY,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition, |
| 159 | 158 |
relativePlotY,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition, |
| 160 |
recordNumber/_alt,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt, |
|
| 161 |
collectorNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/1, |
|
| 162 |
recordNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/2, |
|
| 163 |
authorPlantCode,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/3, |
|
| 159 |
authorPlantCode,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1, |
|
| 160 |
collectorNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1, |
|
| 161 |
recordNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1, |
|
| 164 | 162 |
verbatimScientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/1, |
| 165 | 163 |
scientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2, |
| 166 | 164 |
growthForm,/location/locationevent/taxonoccurrence/growthform, |
| mappings/for_review/Veg+-VegCore.csv | ||
|---|---|---|
| 42 | 42 |
SizeOfSite,plotArea, |
| 43 | 43 |
preparation,preparations, |
| 44 | 44 |
preparationType,preparations, |
| 45 |
recordNumber/_alt,recordNumber/_alt,
|
|
| 45 |
authorPlantCode,recordNumber,
|
|
| 46 | 46 |
collectorNumber,recordNumber, |
| 47 |
recordNumber,recordNumber, |
|
| 48 |
authorPlantCode,recordNumber, |
|
| 49 | 47 |
collector,recordedBy, |
| 50 | 48 |
collector.givenName,recordedBy.givenName, |
| 51 | 49 |
collector.surName,recordedBy.surName, |
| mappings/Veg+.self.csv | ||
|---|---|---|
| 119 | 119 |
projectID,projectID |
| 120 | 120 |
projectName,projectName |
| 121 | 121 |
recordNumber,recordNumber |
| 122 |
recordNumber/_alt,recordNumber/_alt |
|
| 123 | 122 |
recordedBy,recordedBy |
| 124 | 123 |
recordedBy.givenName,recordedBy.givenName |
| 125 | 124 |
recordedBy.surName,recordedBy.surName |
| mappings/Veg+-VegCore.csv | ||
|---|---|---|
| 42 | 42 |
SizeOfSite,plotArea, |
| 43 | 43 |
preparation,preparations, |
| 44 | 44 |
preparationType,preparations, |
| 45 |
recordNumber/_alt,recordNumber/_alt, |
|
| 46 |
collectorNumber,recordNumber/_alt/1, |
|
| 47 |
recordNumber,recordNumber/_alt/2, |
|
| 48 |
authorPlantCode,recordNumber/_alt/3, |
|
| 45 |
authorPlantCode,recordNumber, |
|
| 46 |
collectorNumber,recordNumber, |
|
| 49 | 47 |
collector,recordedBy, |
| 50 | 48 |
collector.givenName,recordedBy.givenName, |
| 51 | 49 |
collector.surName,recordedBy.surName, |
Also available in: Unified diff
mappings/Veg+-VegCore.csv: Removed recordNumber/_alt and recordNumber redirection mappings so that Veg+-VegCore.csv contains only renamings, not business logic. Note that removing the global ordering of these fields does not affect the datasources which contain multiple recordNumber synonyms because they either have a custom ordering or one field is duplicated or unused.