Revision 4594
Added by Aaron Marcuse-Kubitza about 12 years ago
inputs/CTFS/SubplotObservation/unmapped_terms.csv | ||
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Veg+ |
inputs/CTFS/Plot/new_terms.csv | ||
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CTFS[Veg+] |
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CountryID |
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ReferenceX |
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ReferenceY |
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row_num |
inputs/SALVIAS/plotMetadata/unmapped_terms.csv | ||
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Veg+ |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"clay/_units:[default=""%"",to=]/value" |
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"silt/_units:[default=""%"",to=]/value" |
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"sand/_units:[default=""%"",to=]/value" |
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"nitrogen/_units:[default=""%"",to=]/value" |
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"phosphorus/_units:[default=""%"",to=]/value/_map:[""<1,5""=0,*=*]/value" |
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21 |
"carbon/_units:[default=""%"",to=]/value" |
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"potassium/_units:[default=""%"",to=]/value" |
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"magnesium/_units:[default=""%"",to=]/value" |
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"calcium/_units:[default=""%"",to=]/value" |
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"sodium/_units:[default=""%"",to=]/value" |
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"acidity/_units:[default=""%"",to=]/value/_map:[""<0.05""=0,*=*]/value" |
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"baseSaturation/_units:[default=""%"",to=]/value" |
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"organic/_units:[default=""%"",to=]/value" |
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"texture/_units:[default=""%"",to=]/value" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
inputs/SALVIAS/stems/unmapped_terms.csv | ||
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Veg+ |
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"" |
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"" |
inputs/SALVIAS/plotMetadata/new_terms.csv | ||
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SALVIAS |
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2 |
orig_filename |
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3 |
AccessCode |
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4 |
PrimOwnerID |
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5 |
SiteCode |
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6 |
SiteName |
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new_world |
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8 |
MajorGeo |
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9 |
PolDiv1 |
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10 |
pol1_type |
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11 |
pol2 |
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12 |
pol2_type |
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13 |
lat_string |
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14 |
long_string |
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15 |
LatDec |
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16 |
LongDec |
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17 |
lat_long_accuracy |
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18 |
Elev |
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19 |
elev_max_m |
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20 |
elev_min_m |
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21 |
Precip |
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22 |
ElevSource |
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23 |
Temp |
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24 |
PrecipSource |
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25 |
TempSource |
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26 |
bearing |
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27 |
clay_percent |
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28 |
silt_percent |
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29 |
sand_percent |
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30 |
soil_N |
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31 |
soil_P |
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32 |
soil_C |
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33 |
soil_K |
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34 |
soil_Mg |
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35 |
soil_Ca |
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36 |
soil_Na |
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37 |
soil_acidity |
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38 |
soil_base |
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39 |
soil_cation_cap |
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40 |
soil_conductivity |
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41 |
organic_percent |
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42 |
soil_texture |
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43 |
RevisionComments |
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44 |
Locality_Description |
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45 |
topography_desc |
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46 |
vegetation_1 |
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47 |
vegetation_2 |
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48 |
life_zone_code |
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49 |
life_zone |
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50 |
PlotMethod |
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51 |
MethodCode |
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52 |
plot_area_ha |
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53 |
recensused |
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54 |
date_start |
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55 |
date_finish |
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56 |
plot_administrator |
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57 |
tmp_del |
inputs/REMIB/Specimen/new_terms.csv | ||
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1 |
REMIB[Veg+] |
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2 |
acronym |
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3 |
accession_number |
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4 |
long_deg |
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5 |
long_min |
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6 |
long_sec |
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7 |
lat_deg |
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8 |
lat_min |
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9 |
lat_sec |
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10 |
coll_day |
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11 |
coll_month |
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12 |
coll_year |
inputs/CTFS/StemObservation/unmapped_terms.csv | ||
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1 |
Veg+ |
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2 |
"" |
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3 |
"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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26 |
"" |
inputs/CTFS/Subplot/new_terms.csv | ||
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1 |
CTFS[Veg+] |
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2 |
DimX |
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3 |
DimY |
inputs/CTFS/PlotObservation/new_terms.csv | ||
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1 |
CTFS[Veg+] |
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2 |
Description |
inputs/CTFS/TaxonOccurrence/new_terms.csv | ||
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1 |
CTFS[Veg+] |
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2 |
FamilyID |
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3 |
GenusID |
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4 |
SpeciesID |
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5 |
SubSpeciesID |
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6 |
SubSpeciesCurrentTaxonFlag |
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7 |
SubSpeciesObsoleteTaxonFlag |
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8 |
SubSpeciesMnemonic |
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9 |
SubSpeciesAuthority |
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10 |
InfraSpecificLevel |
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11 |
SpeciesCurrentTaxonFlag |
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12 |
SpeciesObsoleteTaxonFlag |
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13 |
SpeciesReferenceID |
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14 |
SpeciesMnemonic |
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15 |
SpeciesAuthority |
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16 |
IDLevel |
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17 |
FieldFamily |
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18 |
Description |
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19 |
GenusReferenceID |
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20 |
GenusAuthority |
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21 |
ReferenceID |
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22 |
row_num |
inputs/CTFS/Plot/unmapped_terms.csv | ||
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1 |
Veg+ |
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2 |
"" |
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3 |
"" |
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4 |
"" |
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5 |
"" |
inputs/FIA/Organism/unmapped_terms.csv | ||
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1 |
Veg+ |
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2 |
"" |
inputs/SALVIAS/projects/new_terms.csv | ||
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1 |
SALVIAS[Veg+] |
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2 |
project_pi |
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3 |
allow_download_all |
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4 |
ipr_specific |
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5 |
ipr_specific_updated |
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6 |
project_name_index |
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7 |
on_project_list_index |
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8 |
project_distinct_index |
inputs/MT/Specimen/unmapped_terms.csv | ||
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1 |
Veg+ |
inputs/MT/Specimen/new_terms.csv | ||
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1 |
MT[Veg+] |
inputs/XAL/Specimen/unmapped_terms.csv | ||
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1 |
Veg+ |
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2 |
recordNumber/_alt/1 |
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3 |
recordNumber/_alt/2 |
inputs/XAL/Specimen/new_terms.csv | ||
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"XAL[Veg+,darwin:]:/content/record/" |
inputs/TEAM/VL/new_terms.csv | ||
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1 |
TEAM[Veg+] |
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2 |
SiteName |
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3 |
1haPlotCode |
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4 |
ObservationDate |
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5 |
Collectors |
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6 |
max_diam |
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7 |
max_diam_pom |
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8 |
ConditionCodes |
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9 |
LocationCodes |
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10 |
SamplingPeriod |
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11 |
Comments |
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12 |
SamplingUnitName |
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13 |
Method |
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14 |
X_1haPlot |
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15 |
Y_1haPlot |
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16 |
TreeNumber |
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17 |
ProtocolVersion |
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18 |
ResponsibleInstitution |
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19 |
ProtocolLeadScientist |
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20 |
ProtocolLeadScientistInstitution |
inputs/TEAM/VL/unmapped_terms.csv | ||
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1 |
Veg+ |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
inputs/TEAM/VT/new_terms.csv | ||
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1 |
TEAM[Veg+] |
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2 |
ObservationDate |
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3 |
Collectors |
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4 |
dbh_pom |
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5 |
dbh_new |
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6 |
dbh_new_pom |
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7 |
ConditionCodes |
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8 |
SamplingPeriod |
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9 |
Comments |
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10 |
SamplingUnitName |
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11 |
Method |
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12 |
X_1haPlot |
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13 |
Y_1haPlot |
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14 |
TreeNumber |
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15 |
SiteName |
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16 |
1haPlotCode |
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17 |
ProtocolVersion |
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18 |
ResponsibleInstitution |
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19 |
ProtocolLeadScientist |
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20 |
ProtocolLeadScientistInstitution |
inputs/TEAM/VT/unmapped_terms.csv | ||
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1 |
Veg+ |
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2 |
"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
inputs/NY/Specimen/unmapped_terms.csv | ||
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1 |
Veg+ |
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2 |
"" |
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3 |
OMIT |
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4 |
Locality/_merge/1 |
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5 |
MinimumElevation/_nullIf:[null=.]/value |
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6 |
Notes/_merge/1 |
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7 |
"Notes/_merge/2/_label[label=""plant fungus""]/value" |
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8 |
"Locality/_merge/2/_label[label=""substrate""]/value" |
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9 |
"Locality/_merge/3/_label[label=""vegetation""]/value" |
inputs/NY/Specimen/new_terms.csv | ||
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1 |
NY[Veg+] |
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2 |
key |
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3 |
PlantFungusDescription |
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4 |
Substrate |
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5 |
Vegetation |
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6 |
UniqueNYInternalRecordNumber |
inputs/Madidi/Organism/new_terms.csv | ||
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1 |
Madidi[Veg+] |
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2 |
Expedition |
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3 |
Inventory name |
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4 |
Number of inventory (general) |
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5 |
Number of inventory (expedition) |
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6 |
"Type Inventory (C, PP, TP)" |
|
7 |
Inventory code |
|
8 |
Tag number |
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9 |
Tree number |
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10 |
Number of subplot |
|
11 |
Index collector |
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12 |
Specimen |
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13 |
Similar specimen |
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14 |
Plot specimen |
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15 |
Expedition specimen |
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16 |
Project specimen |
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17 |
Field family |
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18 |
Field name |
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19 |
Family (revised) |
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20 |
Specie+autor |
|
21 |
Genera |
|
22 |
Species and morphotypes |
|
23 |
Autor (revised) |
|
24 |
Determined by |
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25 |
Qualifier |
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26 |
Common name |
|
27 |
Circumference |
|
28 |
Diameter |
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29 |
Trunk |
|
30 |
Total height |
|
31 |
Bole height |
|
32 |
Phenology |
|
33 |
Crown position |
|
34 |
Crown shape |
|
35 |
Liana presence |
|
36 |
Basal area |
|
37 |
Plot X |
|
38 |
Plot Y |
|
39 |
Observations |
inputs/Madidi/Organism/unmapped_terms.csv | ||
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1 |
Veg+ |
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2 |
"" |
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3 |
"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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14 |
"" |
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"" |
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"" |
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17 |
"" |
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18 |
"" |
inputs/Madidi/Plot/unmapped_terms.csv | ||
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1 |
Veg+ |
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2 |
"" |
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3 |
"" |
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4 |
"" |
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5 |
"" |
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"" |
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"" |
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"" |
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9 |
"" |
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10 |
slopeAspect/_alt/1 |
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11 |
"" |
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12 |
slopeAspect/_alt/2 |
inputs/Madidi/Plot/new_terms.csv | ||
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1 |
Madidi[Veg+] |
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2 |
Inventory number |
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3 |
Expedition number |
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4 |
Expedition name |
|
5 |
Number of inventory (expedition) |
|
6 |
Inventory name |
|
7 |
Inventory code |
|
8 |
First evaluation |
|
9 |
Installed and evaluated by |
|
10 |
Collaborators |
|
11 |
Related Epilocs |
|
12 |
Area |
|
13 |
Number of stems |
|
14 |
Number of trees |
|
15 |
Coordinates |
|
16 |
Latitude (DMS) |
|
17 |
Longitude (DMS) |
|
18 |
Altitude |
|
19 |
Minimum altitude |
|
20 |
Locality description |
|
21 |
Direction |
|
22 |
Vegetation type |
|
23 |
Topographical situation |
|
24 |
Slope |
|
25 |
Soil sample |
|
26 |
pH acuoso (ISRIC 4–– 1 - 14) |
|
27 |
Conductividad electrica (ASPT 6–µS/cm– 1 - 10000) |
|
28 |
Nitrógeno total (ISRIC 6–%–0.0014) |
|
29 |
"Carbón Orgánico (WSP S-9,10–%–0.06)" |
|
30 |
"Materia Orgánica (WSP S-9,10–%–0.1)" |
|
31 |
Fósforo disponible (ISRIC 14-2–mg/Kg–1.5) |
|
32 |
"Sodio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)" |
|
33 |
"Potasio intercambiable (WSP S-5,10–cmolc/Kg–0.0053)" |
|
34 |
"Calcio intercambiable (WSP S-5,10–cmolc/Kg–0.016)" |
|
35 |
"Magnesio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)" |
|
36 |
Acidez intercambiable (ISRIC 11–cmolc/Kg–0.05) |
|
37 |
CIC (ISRIC 11–cmolc/Kg–0.05) |
|
38 |
Arena (DIN 18 123–%–2.5) |
|
39 |
Limo (DIN 18 123–%–1) |
|
40 |
Arcilla (DIN 18 123–%–1) |
|
41 |
Textural class |
|
42 |
Observaciones |
|
43 |
Orientación/exposicion |
inputs/UNCC/Specimen/unmapped_terms.csv | ||
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1 |
Veg+ |
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2 |
taxonRank/_alt/1 |
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3 |
taxonRank/_alt/2 |
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4 |
Collector/_merge/1 |
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5 |
Collector/_merge/2 |
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6 |
Collector/_merge/3 |
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7 |
Collector/_merge/4 |
|
8 |
"fieldNotes/_merge/5/_label[label=""campus""]/value" |
|
9 |
"reproductiveCondition/_map:[A=*,I=*,M=*]/value" |
|
10 |
"reproductiveCondition/_map:[A=*,I=*,M=*]/value" |
|
11 |
"reproductiveCondition/_map:[A=*,I=*,M=*]/value" |
|
12 |
"reproductiveCondition/_map:[A=*,I=*,M=*]/value" |
|
13 |
fieldNotes/_merge/1 |
|
14 |
fieldNotes/_merge/2 |
|
15 |
fieldNotes/_merge/3 |
|
16 |
fieldNotes/_merge/4 |
|
17 |
"fieldNotes/_merge/6/_label[label=""loaned to""]/value" |
|
18 |
"fieldNotes/_merge/7/_label[label=""in or out""]/value" |
|
19 |
associatedMedia |
|
20 |
"" |
inputs/UNCC/Specimen/new_terms.csv | ||
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1 |
UNCC[Veg+] |
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2 |
accession |
|
3 |
herbarium |
|
4 |
usdaRank |
|
5 |
infrarank |
|
6 |
infraname |
|
7 |
SciName |
|
8 |
authors |
|
9 |
collector1 |
|
10 |
collector2 |
|
11 |
collector3 |
|
12 |
collectno |
|
13 |
collmonth |
|
14 |
collday |
|
15 |
collyear |
|
16 |
campus |
|
17 |
leaves |
|
18 |
flower |
|
19 |
fruit |
|
20 |
root |
|
21 |
comment1 |
|
22 |
comment2 |
|
23 |
comment3 |
|
24 |
comment4 |
|
25 |
loanto |
|
26 |
inorout |
|
27 |
sheetno |
|
28 |
filler |
inputs/ACAD/Specimen/unmapped_terms.csv | ||
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1 |
Veg+ |
inputs/ACAD/Specimen/new_terms.csv | ||
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1 |
ACAD[Veg+] |
inputs/SALVIAS-CSV/Organism/new_terms.csv | ||
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1 |
SALVIAS-CSV |
|
2 |
OBSERVATION_ID |
|
3 |
plot_code |
|
4 |
census_no |
|
5 |
census_date |
|
6 |
individual_code |
|
7 |
ind_id |
|
8 |
tag1 |
|
9 |
tag2 |
|
10 |
x_position |
|
11 |
y_position |
|
12 |
voucher_string |
|
13 |
coll_number |
|
14 |
collector_code |
|
15 |
coll_lastname |
|
16 |
coll_firstname |
|
17 |
det_type |
|
18 |
fam_status |
|
19 |
gen_status |
|
20 |
species_status |
|
21 |
specific_authority |
|
22 |
infra_rank_1 |
|
23 |
infra_ep_1 |
|
24 |
cf_aff |
|
25 |
comments |
|
26 |
no_of_individuals |
|
27 |
intercept_cm |
|
28 |
height_m |
|
29 |
ht_first_branch_m |
|
30 |
stem_tag1 |
|
31 |
stem_tag2 |
|
32 |
stem_dbh |
|
33 |
basal_diam |
|
34 |
stem_height_m |
|
35 |
stem_height_first_branch_m |
|
36 |
stem_canopy_form |
|
37 |
stem_canopy_position |
|
38 |
stem_liana_infestation |
|
39 |
orig_family |
|
40 |
orig_species |
inputs/SALVIAS-CSV/Organism/unmapped_terms.csv | ||
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1 |
Veg+ |
|
2 |
"" |
|
3 |
tag/_alt/1 |
|
4 |
previousTag/_alt/1 |
|
5 |
catalogNumber/_alt/2 |
|
6 |
catalogNumber/_alt/1 |
|
7 |
"" |
|
8 |
"" |
|
9 |
"" |
|
10 |
"" |
|
11 |
"" |
|
12 |
height/_alt/2 |
|
13 |
tag/_alt/2 |
|
14 |
previousTag/_alt/2 |
|
15 |
height/_alt/1 |
inputs/SALVIAS-CSV/Plot/unmapped_terms.csv | ||
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1 |
Veg+ |
|
2 |
"clay/_units:[default=""%"",to=]/value" |
|
3 |
"silt/_units:[default=""%"",to=]/value" |
|
4 |
"sand/_units:[default=""%"",to=]/value" |
|
5 |
"organic/_units:[default=""%"",to=]/value" |
|
6 |
"nitrogen/_units:[default=""%"",to=]/value" |
|
7 |
"phosphorus/_units:[default=""%"",to=]/value/_map:[""<1,5""=0,*=*]/value" |
|
8 |
"carbon/_units:[default=""%"",to=]/value" |
|
9 |
"potassium/_units:[default=""%"",to=]/value" |
|
10 |
"magnesium/_units:[default=""%"",to=]/value" |
|
11 |
"calcium/_units:[default=""%"",to=]/value" |
|
12 |
"sodium/_units:[default=""%"",to=]/value" |
|
13 |
"acidity/_units:[default=""%"",to=]/value/_map:[""<0.05""=0,*=*]/value" |
|
14 |
"baseSaturation/_units:[default=""%"",to=]/value" |
|
15 |
"" |
|
16 |
"" |
inputs/SALVIAS-CSV/Plot/new_terms.csv | ||
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1 |
SALVIAS-CSV |
|
2 |
project |
|
3 |
plot_code |
|
4 |
major_geo |
|
5 |
pol1 |
|
6 |
pol2 |
|
7 |
locality_description |
|
8 |
lat_decimal |
|
9 |
long_decimal |
|
10 |
elev_m |
|
11 |
elev_max_m |
|
12 |
elev_min_m |
|
13 |
temp_c |
|
14 |
precip_mm |
|
15 |
clay_percent |
|
16 |
silt_percent |
|
17 |
sand_percent |
|
18 |
organic_percent |
|
19 |
soil_N |
|
20 |
soil_P |
|
21 |
soil_C |
|
22 |
soil_K |
|
23 |
soil_Mg |
|
24 |
soil_Ca |
|
25 |
soil_Na |
|
26 |
soil_acidity |
|
27 |
soil_base |
|
28 |
soil_cation_cap |
|
29 |
soil_conductivity |
|
30 |
soil_texture |
|
31 |
holdridge_life_zone |
|
32 |
life_zone_code |
|
33 |
observation_type |
|
34 |
plot_methodology |
|
35 |
plot_area_ha |
|
36 |
recensused |
|
37 |
date_start |
|
38 |
date_finish |
inputs/CVS/Organism/new_terms.csv | ||
---|---|---|
1 |
CVS |
|
2 |
obsStartDate |
|
3 |
realLatitude |
|
4 |
realLongitude |
|
5 |
locationAccuracy-m |
|
6 |
publicLatitude |
|
7 |
publicLongitude |
|
8 |
confidentialityStatus |
|
9 |
currentTaxonName sec Weakley 2006 |
|
10 |
%cover |
inputs/CVS/Organism/unmapped_terms.csv | ||
---|---|---|
1 |
Veg+ |
|
2 |
OMIT |
|
3 |
OMIT |
|
4 |
"" |
inputs/U/Specimen/new_terms.csv | ||
---|---|---|
1 |
U[Veg+] |
|
2 |
Barcode |
|
3 |
Prefix |
|
4 |
Number |
|
5 |
Suffix |
|
6 |
Addcoll |
|
7 |
Colldd |
|
8 |
Collmm |
|
9 |
Collyy |
|
10 |
DateInfo |
|
11 |
cf |
|
12 |
Detby |
|
13 |
Detyy |
|
14 |
Gazetteer |
|
15 |
Newgazett |
|
16 |
Majorarea |
|
17 |
Locnotes |
|
18 |
Coorsyst |
|
19 |
Lat |
|
20 |
NS |
|
21 |
Long |
|
22 |
EW |
|
23 |
Alt |
|
24 |
Alt2 |
|
25 |
Ecology |
|
26 |
Phenology |
inputs/GBIF/Specimen/new_terms.csv | ||
---|---|---|
1 |
GBIF[Veg+] |
|
2 |
LatestDateCollected |
|
3 |
InstitutionCD |
|
4 |
CollectionCD |
|
5 |
CatalogNO |
|
6 |
LastDateModified |
|
7 |
ScientificNameOriginal |
|
8 |
AuthorOfScientificName |
|
9 |
GBIFFamilyOriginal |
|
10 |
GBIFGenusOriginal |
|
11 |
MinimumElevationInMeter |
|
12 |
MaximumElevationInMeter |
inputs/SALVIAS/plotObservations/unmapped_terms.csv | ||
---|---|---|
1 |
Veg+ |
|
2 |
"" |
|
3 |
"" |
|
4 |
"" |
|
5 |
"" |
|
6 |
catalogNumber/_alt/2 |
|
7 |
catalogNumber/_alt/1 |
|
8 |
"" |
|
9 |
"" |
|
10 |
"" |
|
11 |
"" |
|
12 |
"" |
|
13 |
"" |
|
14 |
"" |
|
15 |
"" |
|
16 |
"" |
|
17 |
"" |
|
18 |
"" |
|
19 |
"" |
|
20 |
"" |
|
21 |
"" |
|
22 |
"" |
|
23 |
"" |
|
24 |
"" |
|
25 |
"" |
|
26 |
"" |
|
27 |
"" |
|
28 |
"" |
inputs/ARIZ/Specimen/unmapped_terms.csv | ||
---|---|---|
1 |
Veg+ |
|
2 |
CatalogNumber/_alt/2 |
|
3 |
CatalogNumber/_alt/1 |
|
4 |
OMIT |
|
5 |
eventTime |
|
6 |
dateCollected/_alt/0 |
|
7 |
"" |
|
8 |
verbatimSRS |
|
9 |
georeferenceProtocol |
|
10 |
georeferenceRemarks |
|
11 |
ScientificName/_alt/2 |
|
12 |
ScientificName/_alt/1 |
|
13 |
"" |
|
14 |
lifeStage |
|
15 |
"associatedSequences/_label[label=""GenBank""]/value" |
|
16 |
RelatedCatalogItem/_alt/1 |
|
17 |
RelatedCatalogItem/_alt/2 |
inputs/REMIB/Specimen/unmapped_terms.csv | ||
---|---|---|
1 |
Veg+ |
|
2 |
"" |
|
3 |
"" |
|
4 |
"" |
|
5 |
"" |
inputs/CTFS/StemObservation/new_terms.csv | ||
---|---|---|
1 |
CTFS[Veg+] |
|
2 |
FamilyID |
|
3 |
GenusID |
|
4 |
SpeciesID |
|
5 |
SubSpeciesID |
|
6 |
TreeID |
|
7 |
MeasureID |
|
8 |
HOM |
|
9 |
PrimaryStem |
|
10 |
ExactDate |
|
11 |
StemDescription |
|
12 |
x |
|
13 |
y |
|
14 |
SubSpeciesCurrentTaxonFlag |
|
15 |
SubSpeciesObsoleteTaxonFlag |
|
16 |
SubSpeciesMnemonic |
|
17 |
SubSpeciesAuthority |
|
18 |
InfraSpecificLevel |
|
19 |
SpeciesCurrentTaxonFlag |
|
20 |
SpeciesObsoleteTaxonFlag |
|
21 |
SpeciesReferenceID |
|
22 |
SpeciesMnemonic |
|
23 |
SpeciesAuthority |
|
24 |
IDLevel |
|
25 |
FieldFamily |
|
26 |
Description |
|
27 |
GenusReferenceID |
|
28 |
GenusAuthority |
|
29 |
ReferenceID |
|
30 |
row_num |
inputs/CTFS/Subplot/unmapped_terms.csv | ||
---|---|---|
1 |
Veg+ |
|
2 |
OMIT |
|
3 |
"" |
|
4 |
"" |
inputs/CTFS/PlotObservation/unmapped_terms.csv | ||
---|---|---|
1 |
Veg+ |
|
2 |
"" |
inputs/CTFS/TaxonOccurrence/unmapped_terms.csv | ||
---|---|---|
1 |
Veg+ |
|
2 |
"" |
|
3 |
"" |
|
4 |
"" |
|
5 |
"" |
|
6 |
"" |
|
7 |
"" |
|
8 |
"" |
|
9 |
"" |
|
10 |
"" |
|
11 |
"" |
|
12 |
"" |
|
13 |
"" |
|
14 |
"" |
|
15 |
"" |
|
16 |
"" |
|
17 |
"" |
|
18 |
"" |
|
19 |
"" |
|
20 |
"" |
|
21 |
"" |
|
22 |
"" |
inputs/CTFS/SubplotObservation/new_terms.csv | ||
---|---|---|
1 |
CTFS[Veg+] |
inputs/FIA/Organism/new_terms.csv | ||
---|---|---|
1 |
FIA[Veg+] |
|
2 |
TreeTag |
|
3 |
MeasYear |
|
4 |
MeasMon |
|
5 |
MeasDay |
|
6 |
PlotCD |
|
7 |
HOM |
inputs/SALVIAS/projects/unmapped_terms.csv | ||
---|---|---|
1 |
Veg+ |
|
2 |
"" |
|
3 |
"" |
|
4 |
"" |
|
5 |
"" |
|
6 |
"" |
|
7 |
"" |
|
8 |
"" |
inputs/SALVIAS/plotObservations/new_terms.csv | ||
---|---|---|
1 |
SALVIAS |
|
2 |
PlotObsID |
|
3 |
PlotCode |
|
4 |
census_no |
|
5 |
census_date |
|
6 |
OrigRecordID |
|
7 |
Line |
|
8 |
Ind |
|
9 |
ind_id |
|
10 |
tag1 |
|
11 |
tag2 |
|
12 |
x_position |
|
13 |
y_position |
|
14 |
dist |
|
15 |
perp_dist |
|
16 |
SourceVoucher |
|
17 |
coll_number |
|
18 |
collector_code |
|
19 |
coll_inits |
|
20 |
coll_lastname |
|
21 |
coll_firstname |
|
22 |
DetType |
|
23 |
det_by |
|
24 |
fam_status |
|
25 |
gen_status |
|
26 |
name_status |
|
27 |
SpAuthStatus |
|
28 |
GenAuth |
|
29 |
auth |
|
30 |
infra_rank_1 |
|
31 |
infra_ep_1 |
|
32 |
infra_auth_1 |
|
33 |
common_name |
|
34 |
morphoname |
|
35 |
species_code |
|
36 |
height_class |
|
37 |
height_m |
|
38 |
height_m_commercial |
|
39 |
ht_first_branch_m |
|
40 |
NoInd |
|
41 |
intercept_cm |
|
42 |
cfaff |
|
43 |
other_annotations |
|
44 |
morphocf |
|
45 |
IsMorpho |
|
46 |
OrigFamily |
|
47 |
OrigGenus |
|
48 |
OrigSpecies |
|
49 |
OrigAuth |
|
50 |
phenology |
|
51 |
temp_dbh |
|
52 |
temp_liandbh |
|
53 |
tmp_del |
inputs/ARIZ/Specimen/new_terms.csv | ||
---|---|---|
1 |
ARIZ[Veg+] |
|
2 |
CatalogNumberNumeric |
|
3 |
TimeCollected |
|
4 |
VerbatimCollectingDate |
|
5 |
HorizontalDatum |
|
6 |
OriginalCoordinateSystem |
|
7 |
GeorefMethod |
|
8 |
LatLongComments |
|
9 |
IdentificationModifier |
|
10 |
Tissues |
|
11 |
AgeClass |
|
12 |
GenBankNum |
|
13 |
OtherCatalogNumbers |
|
14 |
RelatedCatalogedItems |
inputs/SALVIAS/stems/new_terms.csv | ||
---|---|---|
1 |
SALVIAS |
|
2 |
origrecord_id_stems |
|
3 |
PlotObsID |
|
4 |
NoInd |
|
5 |
basal_diam |
|
6 |
stem_dbh |
|
7 |
gentry_dbh |
|
8 |
stem_tag1 |
|
9 |
stem_tag2 |
|
10 |
stem_height_m |
|
11 |
stem_height_first_branch_m |
|
12 |
stem_canopy_form |
|
13 |
stem_canopy_position |
|
14 |
stem_liana_infestation |
|
15 |
tmp_del |
inputs/U/Specimen/unmapped_terms.csv | ||
---|---|---|
1 |
Veg+ |
|
2 |
Collector/_merge/1 |
|
3 |
"" |
|
4 |
"" |
|
5 |
Collector/_merge/2 |
|
6 |
"" |
|
7 |
"VerbatimLocality/_merge/1/_label[label=""gazetteer""]/value/_merge/1" |
|
8 |
"VerbatimLocality/_merge/1/_label[label=""gazetteer""]/value/_merge/2" |
|
9 |
"" |
|
10 |
VerbatimLocality/_merge/2 |
|
11 |
"" |
|
12 |
"" |
|
13 |
"" |
|
14 |
"" |
|
15 |
"" |
|
16 |
ReproductiveCondition |
inputs/SpeciesLink/Specimen/unmapped_terms.csv | ||
---|---|---|
1 |
Veg+ |
|
2 |
ScientificNameAuthor/_alt/3 |
|
3 |
ScientificNameAuthor/_alt/2 |
|
4 |
ScientificNameAuthor/_alt/1 |
|
5 |
JulianDay/_alt/2 |
|
6 |
JulianDay/_alt/1 |
|
7 |
recordNumber/_alt/3 |
|
8 |
recordNumber/_alt/2 |
|
9 |
recordNumber/_alt/1 |
|
10 |
recordNumber/_alt/2 |
|
11 |
dcterms:modified |
inputs/input.Makefile | ||
---|---|---|
282 | 282 |
|
283 | 283 |
# Via maps cleanup |
284 | 284 |
ifneq ($(filter %/.map.csv.last_cleanup,$(MAKECMDGOALS)),) |
285 |
%/.map.csv.last_cleanup: %/map.csv $(coreMap) $(vocab) $(dict) |
|
285 |
%/.map.csv.last_cleanup %/unmapped_terms.csv %/new_terms.csv: %/map.csv\ |
|
286 |
$(coreMap) $(vocab) $(dict) |
|
286 | 287 |
$(bin)/in_place $< $(bin)/canon 1 $(word 3,$+) |
287 | 288 |
$(bin)/in_place $< $(bin)/translate 1 $(word 4,$+) |
288 | 289 |
$(bin)/in_place $< env ignore=1 $(bin)/subtract $(word 2,$+) 0 1 2 |
290 |
$(bin)/filter_out_ci 1 $(word 3,$+) <$<|$(bin)/cols 1 >$*/unmapped_terms.csv |
|
291 |
$(bin)/filter_out_ci 0 $(word 3,$+) <$<|$(bin)/cols 0 >$*/new_terms.csv |
|
289 | 292 |
touch $@ |
290 | 293 |
# Include comment column so commented mappings are never removed |
291 | 294 |
else |
inputs/VegBank/observation_/unmapped_terms.csv | ||
---|---|---|
1 |
Veg+ |
|
2 |
"" |
|
3 |
"" |
|
4 |
"" |
|
5 |
"" |
|
6 |
"" |
|
7 |
"" |
|
8 |
"" |
|
9 |
"" |
|
10 |
"" |
|
11 |
"" |
|
12 |
"" |
|
13 |
"" |
|
14 |
"" |
|
15 |
"" |
|
16 |
"" |
|
17 |
"" |
|
18 |
"" |
|
19 |
"" |
|
20 |
"" |
|
21 |
"" |
|
22 |
"" |
|
23 |
"" |
|
24 |
"" |
|
25 |
"" |
|
26 |
"" |
|
27 |
"" |
|
28 |
"" |
|
29 |
"" |
|
30 |
"" |
|
31 |
"" |
|
32 |
"" |
|
33 |
"" |
|
34 |
"" |
|
35 |
"" |
|
36 |
"" |
|
37 |
"" |
|
38 |
"" |
|
39 |
"" |
|
40 |
"" |
|
41 |
"" |
|
42 |
"" |
|
43 |
"" |
|
44 |
"" |
|
45 |
"" |
|
46 |
"" |
|
47 |
"" |
|
48 |
"" |
|
49 |
"" |
|
50 |
"" |
|
51 |
"" |
|
52 |
"" |
|
53 |
"" |
|
54 |
"" |
|
55 |
"" |
|
56 |
"" |
|
57 |
"" |
|
58 |
"" |
|
59 |
"" |
|
60 |
"" |
|
61 |
"" |
|
62 |
"" |
|
63 |
"" |
|
64 |
"" |
|
65 |
"" |
|
66 |
"" |
|
67 |
"" |
|
68 |
"" |
|
69 |
"" |
|
70 |
"" |
|
71 |
"" |
|
72 |
"" |
|
73 |
"" |
|
74 |
"" |
|
75 |
"" |
|
76 |
"" |
|
77 |
"" |
|
78 |
"" |
|
79 |
"" |
|
80 |
"" |
|
81 |
"" |
|
82 |
"" |
|
83 |
"" |
|
84 |
"" |
|
85 |
"" |
|
86 |
"" |
|
87 |
"" |
|
88 |
"" |
|
89 |
"" |
|
90 |
"" |
|
91 |
"" |
|
92 |
"" |
|
93 |
"" |
|
94 |
"" |
|
95 |
"" |
|
96 |
"" |
|
97 |
"" |
|
98 |
"" |
|
99 |
"" |
|
100 |
"" |
|
101 |
"" |
inputs/QMOR/Specimen/new_terms.csv | ||
---|---|---|
1 |
QMOR[Veg+] |
inputs/NCU-NCSC/Specimen/unmapped_terms.csv | ||
---|---|---|
1 |
Veg+ |
|
2 |
"Latitude/_replace:[""\?$""=]/value" |
|
3 |
"Longitude/_replace:[""\?$""=]/value" |
|
4 |
"" |
|
5 |
"" |
|
6 |
"" |
|
7 |
preparations |
|
8 |
typeStatus |
inputs/MO/Specimen/unmapped_terms.csv | ||
---|---|---|
1 |
Veg+ |
inputs/VegBank/observation_/new_terms.csv | ||
---|---|---|
1 |
VegBank[Veg+] |
|
2 |
observation_id |
|
3 |
previousobs_id |
|
4 |
dateaccuracy |
|
5 |
covermethod_id |
|
6 |
coverdispersion |
|
7 |
autotaxoncover |
|
8 |
stratummethod_id |
|
9 |
methodnarrative |
|
10 |
taxonobservationarea |
|
11 |
stemsizelimit |
|
12 |
stemobservationarea |
|
13 |
stemsamplemethod |
|
14 |
originaldata |
|
15 |
effortlevel |
|
16 |
plotvalidationlevel |
|
17 |
floristicquality |
|
18 |
bryophytequality |
|
19 |
lichenquality |
|
20 |
observationnarrative |
|
21 |
landscapenarrative |
|
22 |
homogeneity |
|
23 |
phenologicaspect |
|
24 |
representativeness |
|
25 |
standmaturity |
|
26 |
successionalstatus |
|
27 |
basalarea |
|
28 |
hydrologicregime |
|
29 |
soilmoistureregime |
|
30 |
soildrainage |
|
31 |
watersalinity |
|
32 |
waterdepth |
|
33 |
shoredistance |
|
34 |
soildepth |
|
35 |
organicdepth |
|
36 |
soiltaxon_id |
|
37 |
soiltaxonsrc |
|
38 |
percentbedrock |
|
39 |
percentrockgravel |
|
40 |
percentwood |
|
41 |
percentlitter |
|
42 |
percentbaresoil |
|
43 |
percentwater |
|
44 |
percentother |
|
45 |
nameother |
|
46 |
treeht |
|
47 |
shrubht |
|
48 |
fieldht |
|
49 |
nonvascularht |
|
50 |
submergedht |
|
51 |
treecover |
|
52 |
shrubcover |
|
53 |
fieldcover |
|
54 |
nonvascularcover |
|
55 |
floatingcover |
|
56 |
submergedcover |
|
57 |
dominantstratum |
|
58 |
growthform1type |
|
59 |
growthform2type |
|
60 |
growthform3type |
|
61 |
growthform1cover |
|
62 |
growthform2cover |
|
63 |
growthform3cover |
|
64 |
totalcover |
|
65 |
notespublic |
|
66 |
notesmgt |
|
67 |
revisions |
|
68 |
obsstartdate |
|
69 |
obsenddate |
|
70 |
dateentered |
|
71 |
emb_observation |
|
72 |
interp_orig_ci_id |
|
73 |
interp_orig_cc_id |
|
74 |
interp_orig_sciname |
|
75 |
interp_orig_code |
|
76 |
interp_orig_party_id |
|
77 |
interp_orig_partyname |
|
78 |
interp_current_ci_id |
|
79 |
interp_current_cc_id |
|
80 |
interp_current_sciname |
|
81 |
interp_current_code |
|
82 |
interp_current_party_id |
|
83 |
interp_current_partyname |
|
84 |
interp_bestfit_ci_id |
|
85 |
interp_bestfit_cc_id |
|
86 |
interp_bestfit_sciname |
|
87 |
interp_bestfit_code |
|
88 |
interp_bestfit_party_id |
|
89 |
interp_bestfit_partyname |
|
90 |
toptaxon1name |
|
91 |
toptaxon2name |
|
92 |
toptaxon3name |
|
93 |
toptaxon4name |
|
94 |
toptaxon5name |
|
95 |
numberoftaxa |
|
96 |
accessioncode |
|
97 |
soilobs_id |
|
98 |
soilhorizon |
|
99 |
soildepthtop |
|
100 |
soildepthbottom |
|
101 |
soilcolor |
|
102 |
soilorganic |
|
103 |
soiltexture |
|
104 |
soilsand |
|
105 |
soilsilt |
|
106 |
soilclay |
|
107 |
soilcoarse |
|
108 |
soilph |
|
109 |
exchangecapacity |
|
110 |
soildescription |
|
111 |
emb_soilobs |
|
112 |
row_num |
inputs/QMOR/Specimen/unmapped_terms.csv | ||
---|---|---|
1 |
Veg+ |
inputs/NCU-NCSC/Specimen/new_terms.csv | ||
---|---|---|
1 |
NCU-NCSC[Veg+] |
|
2 |
Accession Number |
|
3 |
SeriesName |
|
4 |
Barcode |
|
5 |
Full Taxon Name |
|
6 |
Collect Date |
|
7 |
Lat (-=S) |
|
8 |
Long (-=W) |
|
9 |
Accuracy |
|
10 |
FIPS |
|
11 |
Alt N/S |
|
12 |
Alt E/W |
|
13 |
Format |
|
14 |
Typology |
inputs/MO/Specimen/new_terms.csv | ||
---|---|---|
1 |
MO[Veg+] |
|
2 |
convertednotes |
inputs/VegBank/taxonobservation_/new_terms.csv | ||
---|---|---|
1 |
VegBank[Veg+] |
|
2 |
plantconcept_id |
|
3 |
taxonobservation_id |
|
4 |
observation_id |
|
5 |
authorplantname |
|
6 |
taxonobservation_reference_id |
|
7 |
taxoninferencearea |
|
8 |
emb_taxonobservation |
|
9 |
int_origplantconcept_id |
|
10 |
int_origplantscifull |
|
11 |
int_origplantscinamenoauth |
|
12 |
int_origplantcommon |
|
13 |
int_origplantcode |
|
14 |
int_currplantconcept_id |
|
15 |
int_currplantscifull |
|
16 |
int_currplantscinamenoauth |
|
17 |
int_currplantcommon |
|
18 |
int_currplantcode |
|
19 |
taxonobservation_accessioncode |
|
20 |
taxoninterpretation_id |
|
21 |
stemlocation_id |
|
22 |
taxoninterpretation_plantname_id |
|
23 |
party_id |
|
24 |
role_id |
|
25 |
interpretationtype |
|
26 |
reference_id |
|
27 |
originalinterpretation |
|
28 |
currentinterpretation |
|
29 |
taxonconfidence |
|
30 |
collector_id |
|
31 |
collectionnumber |
|
32 |
museum_id |
|
33 |
museumaccessionnumber |
|
34 |
grouptype |
|
35 |
notespublic |
|
36 |
notesmgt |
|
37 |
revisions |
|
38 |
interpretationdate |
|
39 |
collectiondate |
|
40 |
emb_taxoninterpretation |
|
41 |
taxoninterpretation_accessioncode |
|
42 |
plantname_id |
|
43 |
plantconcept__reference_id |
|
44 |
plantname |
|
45 |
plantcode |
|
46 |
plantdescription |
|
47 |
d_obscount |
|
48 |
d_currentaccepted |
|
49 |
plantconcept__accessioncode |
|
50 |
Subkingdom |
|
51 |
Superdivision |
|
52 |
Division |
|
53 |
Subdivision |
|
54 |
Subclass |
|
55 |
Variety |
|
56 |
Forma |
|
57 |
row_num |
inputs/VegBank/plot_/unmapped_terms.csv | ||
---|---|---|
1 |
Veg+ |
|
2 |
"" |
|
3 |
parentPlotID |
|
4 |
OMIT |
|
5 |
OMIT |
|
6 |
"" |
|
7 |
"" |
|
8 |
"" |
|
9 |
"" |
|
10 |
"" |
|
11 |
"" |
|
12 |
"" |
|
13 |
"" |
|
14 |
"" |
|
15 |
"" |
|
16 |
"" |
|
17 |
"" |
|
18 |
"" |
|
19 |
"" |
|
20 |
"" |
|
21 |
"" |
|
22 |
"" |
|
23 |
"" |
|
24 |
"" |
|
25 |
"" |
|
26 |
"" |
|
27 |
"" |
|
28 |
"" |
|
29 |
"" |
|
30 |
"" |
|
31 |
"" |
|
32 |
"" |
|
33 |
"" |
|
34 |
"" |
|
35 |
"" |
|
36 |
"" |
Also available in: Unified diff
input.Makefile: Maps building: %/.map.csv.last_cleanup: Generate reports on new and unmapped terms in map.csv