Revision 4594
Added by Aaron Marcuse-Kubitza over 12 years ago
| inputs/CTFS/SubplotObservation/unmapped_terms.csv | ||
|---|---|---|
| 1 |
Veg+ |
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| inputs/CTFS/Plot/new_terms.csv | ||
|---|---|---|
| 1 |
CTFS[Veg+] |
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| 2 |
CountryID |
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| 3 |
ReferenceX |
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| 4 |
ReferenceY |
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| 5 |
row_num |
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| inputs/SALVIAS/plotMetadata/unmapped_terms.csv | ||
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| 1 |
Veg+ |
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| 2 |
"" |
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| 3 |
"" |
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| 4 |
"" |
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| 5 |
"" |
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| 6 |
"" |
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"" |
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"" |
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"" |
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"" |
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"" |
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| 12 |
"" |
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"" |
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| 14 |
"" |
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| 15 |
"" |
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| 16 |
"clay/_units:[default=""%"",to=]/value" |
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| 17 |
"silt/_units:[default=""%"",to=]/value" |
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| 18 |
"sand/_units:[default=""%"",to=]/value" |
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| 19 |
"nitrogen/_units:[default=""%"",to=]/value" |
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| 20 |
"phosphorus/_units:[default=""%"",to=]/value/_map:[""<1,5""=0,*=*]/value" |
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| 21 |
"carbon/_units:[default=""%"",to=]/value" |
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| 22 |
"potassium/_units:[default=""%"",to=]/value" |
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| 23 |
"magnesium/_units:[default=""%"",to=]/value" |
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| 24 |
"calcium/_units:[default=""%"",to=]/value" |
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| 25 |
"sodium/_units:[default=""%"",to=]/value" |
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| 26 |
"acidity/_units:[default=""%"",to=]/value/_map:[""<0.05""=0,*=*]/value" |
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| 27 |
"baseSaturation/_units:[default=""%"",to=]/value" |
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| 28 |
"organic/_units:[default=""%"",to=]/value" |
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| 29 |
"texture/_units:[default=""%"",to=]/value" |
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| 30 |
"" |
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| 31 |
"" |
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| 32 |
"" |
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| 33 |
"" |
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| 34 |
"" |
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| 35 |
"" |
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| 36 |
"" |
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| 37 |
"" |
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| 38 |
"" |
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| 39 |
"" |
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| inputs/SALVIAS/stems/unmapped_terms.csv | ||
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| 1 |
Veg+ |
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| 2 |
"" |
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| 3 |
"" |
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| inputs/SALVIAS/plotMetadata/new_terms.csv | ||
|---|---|---|
| 1 |
SALVIAS |
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| 2 |
orig_filename |
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| 3 |
AccessCode |
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| 4 |
PrimOwnerID |
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| 5 |
SiteCode |
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| 6 |
SiteName |
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| 7 |
new_world |
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| 8 |
MajorGeo |
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| 9 |
PolDiv1 |
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| 10 |
pol1_type |
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| 11 |
pol2 |
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| 12 |
pol2_type |
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| 13 |
lat_string |
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| 14 |
long_string |
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| 15 |
LatDec |
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| 16 |
LongDec |
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| 17 |
lat_long_accuracy |
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| 18 |
Elev |
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| 19 |
elev_max_m |
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| 20 |
elev_min_m |
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| 21 |
Precip |
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| 22 |
ElevSource |
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| 23 |
Temp |
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| 24 |
PrecipSource |
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| 25 |
TempSource |
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| 26 |
bearing |
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| 27 |
clay_percent |
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| 28 |
silt_percent |
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| 29 |
sand_percent |
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| 30 |
soil_N |
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| 31 |
soil_P |
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| 32 |
soil_C |
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| 33 |
soil_K |
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| 34 |
soil_Mg |
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| 35 |
soil_Ca |
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| 36 |
soil_Na |
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| 37 |
soil_acidity |
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| 38 |
soil_base |
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| 39 |
soil_cation_cap |
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| 40 |
soil_conductivity |
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| 41 |
organic_percent |
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| 42 |
soil_texture |
|
| 43 |
RevisionComments |
|
| 44 |
Locality_Description |
|
| 45 |
topography_desc |
|
| 46 |
vegetation_1 |
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| 47 |
vegetation_2 |
|
| 48 |
life_zone_code |
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| 49 |
life_zone |
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| 50 |
PlotMethod |
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| 51 |
MethodCode |
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| 52 |
plot_area_ha |
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| 53 |
recensused |
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| 54 |
date_start |
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| 55 |
date_finish |
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| 56 |
plot_administrator |
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| 57 |
tmp_del |
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| inputs/MT/Specimen/unmapped_terms.csv | ||
|---|---|---|
| 1 |
Veg+ |
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| inputs/MT/Specimen/new_terms.csv | ||
|---|---|---|
| 1 |
MT[Veg+] |
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| inputs/XAL/Specimen/unmapped_terms.csv | ||
|---|---|---|
| 1 |
Veg+ |
|
| 2 |
recordNumber/_alt/1 |
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| 3 |
recordNumber/_alt/2 |
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| inputs/XAL/Specimen/new_terms.csv | ||
|---|---|---|
| 1 |
"XAL[Veg+,darwin:]:/content/record/" |
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| inputs/TEAM/VL/new_terms.csv | ||
|---|---|---|
| 1 |
TEAM[Veg+] |
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| 2 |
SiteName |
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| 3 |
1haPlotCode |
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| 4 |
ObservationDate |
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| 5 |
Collectors |
|
| 6 |
max_diam |
|
| 7 |
max_diam_pom |
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| 8 |
ConditionCodes |
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| 9 |
LocationCodes |
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| 10 |
SamplingPeriod |
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| 11 |
Comments |
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| 12 |
SamplingUnitName |
|
| 13 |
Method |
|
| 14 |
X_1haPlot |
|
| 15 |
Y_1haPlot |
|
| 16 |
TreeNumber |
|
| 17 |
ProtocolVersion |
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| 18 |
ResponsibleInstitution |
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| 19 |
ProtocolLeadScientist |
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| 20 |
ProtocolLeadScientistInstitution |
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| inputs/TEAM/VL/unmapped_terms.csv | ||
|---|---|---|
| 1 |
Veg+ |
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| 2 |
"" |
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| 3 |
"" |
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| 4 |
"" |
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| 5 |
"" |
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| 6 |
"" |
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| 7 |
"" |
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| 8 |
"" |
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| 9 |
"" |
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| 10 |
"" |
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| 11 |
"" |
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| 12 |
"" |
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| inputs/SALVIAS/stems/new_terms.csv | ||
|---|---|---|
| 1 |
SALVIAS |
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| 2 |
origrecord_id_stems |
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| 3 |
PlotObsID |
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| 4 |
NoInd |
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| 5 |
basal_diam |
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| 6 |
stem_dbh |
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| 7 |
gentry_dbh |
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| 8 |
stem_tag1 |
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| 9 |
stem_tag2 |
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| 10 |
stem_height_m |
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| 11 |
stem_height_first_branch_m |
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| 12 |
stem_canopy_form |
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| 13 |
stem_canopy_position |
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| 14 |
stem_liana_infestation |
|
| 15 |
tmp_del |
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| inputs/U/Specimen/unmapped_terms.csv | ||
|---|---|---|
| 1 |
Veg+ |
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| 2 |
Collector/_merge/1 |
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| 3 |
"" |
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| 4 |
"" |
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| 5 |
Collector/_merge/2 |
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| 6 |
"" |
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| 7 |
"VerbatimLocality/_merge/1/_label[label=""gazetteer""]/value/_merge/1" |
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| 8 |
"VerbatimLocality/_merge/1/_label[label=""gazetteer""]/value/_merge/2" |
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| 9 |
"" |
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| 10 |
VerbatimLocality/_merge/2 |
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| 11 |
"" |
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| 12 |
"" |
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| 13 |
"" |
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| 14 |
"" |
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| 15 |
"" |
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| 16 |
ReproductiveCondition |
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| inputs/U/Specimen/new_terms.csv | ||
|---|---|---|
| 1 |
U[Veg+] |
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| 2 |
Barcode |
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| 3 |
Prefix |
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| 4 |
Number |
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| 5 |
Suffix |
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| 6 |
Addcoll |
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| 7 |
Colldd |
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| 8 |
Collmm |
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| 9 |
Collyy |
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| 10 |
DateInfo |
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| 11 |
cf |
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| 12 |
Detby |
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| 13 |
Detyy |
|
| 14 |
Gazetteer |
|
| 15 |
Newgazett |
|
| 16 |
Majorarea |
|
| 17 |
Locnotes |
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| 18 |
Coorsyst |
|
| 19 |
Lat |
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| 20 |
NS |
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| 21 |
Long |
|
| 22 |
EW |
|
| 23 |
Alt |
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| 24 |
Alt2 |
|
| 25 |
Ecology |
|
| 26 |
Phenology |
|
| inputs/GBIF/Specimen/new_terms.csv | ||
|---|---|---|
| 1 |
GBIF[Veg+] |
|
| 2 |
LatestDateCollected |
|
| 3 |
InstitutionCD |
|
| 4 |
CollectionCD |
|
| 5 |
CatalogNO |
|
| 6 |
LastDateModified |
|
| 7 |
ScientificNameOriginal |
|
| 8 |
AuthorOfScientificName |
|
| 9 |
GBIFFamilyOriginal |
|
| 10 |
GBIFGenusOriginal |
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| 11 |
MinimumElevationInMeter |
|
| 12 |
MaximumElevationInMeter |
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| inputs/REMIB/Specimen/new_terms.csv | ||
|---|---|---|
| 1 |
REMIB[Veg+] |
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| 2 |
acronym |
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| 3 |
accession_number |
|
| 4 |
long_deg |
|
| 5 |
long_min |
|
| 6 |
long_sec |
|
| 7 |
lat_deg |
|
| 8 |
lat_min |
|
| 9 |
lat_sec |
|
| 10 |
coll_day |
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| 11 |
coll_month |
|
| 12 |
coll_year |
|
| inputs/CTFS/StemObservation/unmapped_terms.csv | ||
|---|---|---|
| 1 |
Veg+ |
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| 2 |
"" |
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| 3 |
"" |
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| 4 |
"" |
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| 5 |
"" |
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| 6 |
"" |
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| 7 |
"" |
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| 8 |
"" |
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| 9 |
"" |
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| 10 |
"" |
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| 11 |
"" |
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| 12 |
"" |
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| 13 |
"" |
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| 14 |
"" |
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| 15 |
"" |
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| 16 |
"" |
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| 17 |
"" |
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| 18 |
"" |
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| 19 |
"" |
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| 20 |
"" |
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| 21 |
"" |
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| 22 |
"" |
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| 23 |
"" |
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| 24 |
"" |
|
| 25 |
"" |
|
| 26 |
"" |
|
| inputs/CTFS/Subplot/new_terms.csv | ||
|---|---|---|
| 1 |
CTFS[Veg+] |
|
| 2 |
DimX |
|
| 3 |
DimY |
|
| inputs/CTFS/PlotObservation/new_terms.csv | ||
|---|---|---|
| 1 |
CTFS[Veg+] |
|
| 2 |
Description |
|
| inputs/CTFS/TaxonOccurrence/new_terms.csv | ||
|---|---|---|
| 1 |
CTFS[Veg+] |
|
| 2 |
FamilyID |
|
| 3 |
GenusID |
|
| 4 |
SpeciesID |
|
| 5 |
SubSpeciesID |
|
| 6 |
SubSpeciesCurrentTaxonFlag |
|
| 7 |
SubSpeciesObsoleteTaxonFlag |
|
| 8 |
SubSpeciesMnemonic |
|
| 9 |
SubSpeciesAuthority |
|
| 10 |
InfraSpecificLevel |
|
| 11 |
SpeciesCurrentTaxonFlag |
|
| 12 |
SpeciesObsoleteTaxonFlag |
|
| 13 |
SpeciesReferenceID |
|
| 14 |
SpeciesMnemonic |
|
| 15 |
SpeciesAuthority |
|
| 16 |
IDLevel |
|
| 17 |
FieldFamily |
|
| 18 |
Description |
|
| 19 |
GenusReferenceID |
|
| 20 |
GenusAuthority |
|
| 21 |
ReferenceID |
|
| 22 |
row_num |
|
| inputs/CTFS/Plot/unmapped_terms.csv | ||
|---|---|---|
| 1 |
Veg+ |
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| 2 |
"" |
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| 3 |
"" |
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| 4 |
"" |
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| 5 |
"" |
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| inputs/SpeciesLink/Specimen/unmapped_terms.csv | ||
|---|---|---|
| 1 |
Veg+ |
|
| 2 |
ScientificNameAuthor/_alt/3 |
|
| 3 |
ScientificNameAuthor/_alt/2 |
|
| 4 |
ScientificNameAuthor/_alt/1 |
|
| 5 |
JulianDay/_alt/2 |
|
| 6 |
JulianDay/_alt/1 |
|
| 7 |
recordNumber/_alt/3 |
|
| 8 |
recordNumber/_alt/2 |
|
| 9 |
recordNumber/_alt/1 |
|
| 10 |
recordNumber/_alt/2 |
|
| 11 |
dcterms:modified |
|
| inputs/FIA/Organism/unmapped_terms.csv | ||
|---|---|---|
| 1 |
Veg+ |
|
| 2 |
"" |
|
| inputs/SALVIAS/projects/new_terms.csv | ||
|---|---|---|
| 1 |
SALVIAS[Veg+] |
|
| 2 |
project_pi |
|
| 3 |
allow_download_all |
|
| 4 |
ipr_specific |
|
| 5 |
ipr_specific_updated |
|
| 6 |
project_name_index |
|
| 7 |
on_project_list_index |
|
| 8 |
project_distinct_index |
|
| inputs/SALVIAS/plotObservations/unmapped_terms.csv | ||
|---|---|---|
| 1 |
Veg+ |
|
| 2 |
"" |
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| 3 |
"" |
|
| 4 |
"" |
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| 5 |
"" |
|
| 6 |
catalogNumber/_alt/2 |
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| 7 |
catalogNumber/_alt/1 |
|
| 8 |
"" |
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| 9 |
"" |
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| 10 |
"" |
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| 11 |
"" |
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| 12 |
"" |
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| 13 |
"" |
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| 14 |
"" |
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| 15 |
"" |
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| 16 |
"" |
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| 17 |
"" |
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| 18 |
"" |
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| 19 |
"" |
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| 20 |
"" |
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| 21 |
"" |
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| 22 |
"" |
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| 23 |
"" |
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| 24 |
"" |
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| 25 |
"" |
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| 26 |
"" |
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| 27 |
"" |
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| 28 |
"" |
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| inputs/ARIZ/Specimen/unmapped_terms.csv | ||
|---|---|---|
| 1 |
Veg+ |
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| 2 |
CatalogNumber/_alt/2 |
|
| 3 |
CatalogNumber/_alt/1 |
|
| 4 |
OMIT |
|
| 5 |
eventTime |
|
| 6 |
dateCollected/_alt/0 |
|
| 7 |
"" |
|
| 8 |
verbatimSRS |
|
| 9 |
georeferenceProtocol |
|
| 10 |
georeferenceRemarks |
|
| 11 |
ScientificName/_alt/2 |
|
| 12 |
ScientificName/_alt/1 |
|
| 13 |
"" |
|
| 14 |
lifeStage |
|
| 15 |
"associatedSequences/_label[label=""GenBank""]/value" |
|
| 16 |
RelatedCatalogItem/_alt/1 |
|
| 17 |
RelatedCatalogItem/_alt/2 |
|
| inputs/NCU-NCSC/Specimen/unmapped_terms.csv | ||
|---|---|---|
| 1 |
Veg+ |
|
| 2 |
"Latitude/_replace:[""\?$""=]/value" |
|
| 3 |
"Longitude/_replace:[""\?$""=]/value" |
|
| 4 |
"" |
|
| 5 |
"" |
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| 6 |
"" |
|
| 7 |
preparations |
|
| 8 |
typeStatus |
|
| inputs/TEAM/VT/new_terms.csv | ||
|---|---|---|
| 1 |
TEAM[Veg+] |
|
| 2 |
ObservationDate |
|
| 3 |
Collectors |
|
| 4 |
dbh_pom |
|
| 5 |
dbh_new |
|
| 6 |
dbh_new_pom |
|
| 7 |
ConditionCodes |
|
| 8 |
SamplingPeriod |
|
| 9 |
Comments |
|
| 10 |
SamplingUnitName |
|
| 11 |
Method |
|
| 12 |
X_1haPlot |
|
| 13 |
Y_1haPlot |
|
| 14 |
TreeNumber |
|
| 15 |
SiteName |
|
| 16 |
1haPlotCode |
|
| 17 |
ProtocolVersion |
|
| 18 |
ResponsibleInstitution |
|
| 19 |
ProtocolLeadScientist |
|
| 20 |
ProtocolLeadScientistInstitution |
|
| inputs/TEAM/VT/unmapped_terms.csv | ||
|---|---|---|
| 1 |
Veg+ |
|
| 2 |
"" |
|
| 3 |
"" |
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| 4 |
"" |
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| 5 |
"" |
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| 6 |
"" |
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| 7 |
"" |
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| 8 |
"" |
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| 9 |
"" |
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| 10 |
"" |
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| 11 |
"" |
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| 12 |
"" |
|
| inputs/NY/Specimen/unmapped_terms.csv | ||
|---|---|---|
| 1 |
Veg+ |
|
| 2 |
"" |
|
| 3 |
OMIT |
|
| 4 |
Locality/_merge/1 |
|
| 5 |
MinimumElevation/_nullIf:[null=.]/value |
|
| 6 |
Notes/_merge/1 |
|
| 7 |
"Notes/_merge/2/_label[label=""plant fungus""]/value" |
|
| 8 |
"Locality/_merge/2/_label[label=""substrate""]/value" |
|
| 9 |
"Locality/_merge/3/_label[label=""vegetation""]/value" |
|
| inputs/NY/Specimen/new_terms.csv | ||
|---|---|---|
| 1 |
NY[Veg+] |
|
| 2 |
key |
|
| 3 |
PlantFungusDescription |
|
| 4 |
Substrate |
|
| 5 |
Vegetation |
|
| 6 |
UniqueNYInternalRecordNumber |
|
| inputs/Madidi/Organism/new_terms.csv | ||
|---|---|---|
| 1 |
Madidi[Veg+] |
|
| 2 |
Expedition |
|
| 3 |
Inventory name |
|
| 4 |
Number of inventory (general) |
|
| 5 |
Number of inventory (expedition) |
|
| 6 |
"Type Inventory (C, PP, TP)" |
|
| 7 |
Inventory code |
|
| 8 |
Tag number |
|
| 9 |
Tree number |
|
| 10 |
Number of subplot |
|
| 11 |
Index collector |
|
| 12 |
Specimen |
|
| 13 |
Similar specimen |
|
| 14 |
Plot specimen |
|
| 15 |
Expedition specimen |
|
| 16 |
Project specimen |
|
| 17 |
Field family |
|
| 18 |
Field name |
|
| 19 |
Family (revised) |
|
| 20 |
Specie+autor |
|
| 21 |
Genera |
|
| 22 |
Species and morphotypes |
|
| 23 |
Autor (revised) |
|
| 24 |
Determined by |
|
| 25 |
Qualifier |
|
| 26 |
Common name |
|
| 27 |
Circumference |
|
| 28 |
Diameter |
|
| 29 |
Trunk |
|
| 30 |
Total height |
|
| 31 |
Bole height |
|
| 32 |
Phenology |
|
| 33 |
Crown position |
|
| 34 |
Crown shape |
|
| 35 |
Liana presence |
|
| 36 |
Basal area |
|
| 37 |
Plot X |
|
| 38 |
Plot Y |
|
| 39 |
Observations |
|
| inputs/Madidi/Organism/unmapped_terms.csv | ||
|---|---|---|
| 1 |
Veg+ |
|
| 2 |
"" |
|
| 3 |
"" |
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| 4 |
"" |
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| 5 |
"" |
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| 6 |
"" |
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| 7 |
"" |
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| 8 |
"" |
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| 9 |
"" |
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| 10 |
"" |
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| 11 |
"" |
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| 12 |
"" |
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| 13 |
"" |
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| 14 |
"" |
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| 15 |
"" |
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| 16 |
"" |
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| 17 |
"" |
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| 18 |
"" |
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| inputs/Madidi/Plot/unmapped_terms.csv | ||
|---|---|---|
| 1 |
Veg+ |
|
| 2 |
"" |
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| 3 |
"" |
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| 4 |
"" |
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| 5 |
"" |
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| 6 |
"" |
|
| 7 |
"" |
|
| 8 |
"" |
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| 9 |
"" |
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| 10 |
slopeAspect/_alt/1 |
|
| 11 |
"" |
|
| 12 |
slopeAspect/_alt/2 |
|
| inputs/Madidi/Plot/new_terms.csv | ||
|---|---|---|
| 1 |
Madidi[Veg+] |
|
| 2 |
Inventory number |
|
| 3 |
Expedition number |
|
| 4 |
Expedition name |
|
| 5 |
Number of inventory (expedition) |
|
| 6 |
Inventory name |
|
| 7 |
Inventory code |
|
| 8 |
First evaluation |
|
| 9 |
Installed and evaluated by |
|
| 10 |
Collaborators |
|
| 11 |
Related Epilocs |
|
| 12 |
Area |
|
| 13 |
Number of stems |
|
| 14 |
Number of trees |
|
| 15 |
Coordinates |
|
| 16 |
Latitude (DMS) |
|
| 17 |
Longitude (DMS) |
|
| 18 |
Altitude |
|
| 19 |
Minimum altitude |
|
| 20 |
Locality description |
|
| 21 |
Direction |
|
| 22 |
Vegetation type |
|
| 23 |
Topographical situation |
|
| 24 |
Slope |
|
| 25 |
Soil sample |
|
| 26 |
pH acuoso (ISRIC 4–– 1 - 14) |
|
| 27 |
Conductividad electrica (ASPT 6–µS/cm– 1 - 10000) |
|
| 28 |
Nitrógeno total (ISRIC 6–%–0.0014) |
|
| 29 |
"Carbón Orgánico (WSP S-9,10–%–0.06)" |
|
| 30 |
"Materia Orgánica (WSP S-9,10–%–0.1)" |
|
| 31 |
Fósforo disponible (ISRIC 14-2–mg/Kg–1.5) |
|
| 32 |
"Sodio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)" |
|
| 33 |
"Potasio intercambiable (WSP S-5,10–cmolc/Kg–0.0053)" |
|
| 34 |
"Calcio intercambiable (WSP S-5,10–cmolc/Kg–0.016)" |
|
| 35 |
"Magnesio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)" |
|
| 36 |
Acidez intercambiable (ISRIC 11–cmolc/Kg–0.05) |
|
| 37 |
CIC (ISRIC 11–cmolc/Kg–0.05) |
|
| 38 |
Arena (DIN 18 123–%–2.5) |
|
| 39 |
Limo (DIN 18 123–%–1) |
|
| 40 |
Arcilla (DIN 18 123–%–1) |
|
| 41 |
Textural class |
|
| 42 |
Observaciones |
|
| 43 |
Orientación/exposicion |
|
| inputs/UNCC/Specimen/unmapped_terms.csv | ||
|---|---|---|
| 1 |
Veg+ |
|
| 2 |
taxonRank/_alt/1 |
|
| 3 |
taxonRank/_alt/2 |
|
| 4 |
Collector/_merge/1 |
|
| 5 |
Collector/_merge/2 |
|
| 6 |
Collector/_merge/3 |
|
| 7 |
Collector/_merge/4 |
|
| 8 |
"fieldNotes/_merge/5/_label[label=""campus""]/value" |
|
| 9 |
"reproductiveCondition/_map:[A=*,I=*,M=*]/value" |
|
| 10 |
"reproductiveCondition/_map:[A=*,I=*,M=*]/value" |
|
| 11 |
"reproductiveCondition/_map:[A=*,I=*,M=*]/value" |
|
| 12 |
"reproductiveCondition/_map:[A=*,I=*,M=*]/value" |
|
| 13 |
fieldNotes/_merge/1 |
|
| 14 |
fieldNotes/_merge/2 |
|
| 15 |
fieldNotes/_merge/3 |
|
| 16 |
fieldNotes/_merge/4 |
|
| 17 |
"fieldNotes/_merge/6/_label[label=""loaned to""]/value" |
|
| 18 |
"fieldNotes/_merge/7/_label[label=""in or out""]/value" |
|
| 19 |
associatedMedia |
|
| 20 |
"" |
|
| inputs/UNCC/Specimen/new_terms.csv | ||
|---|---|---|
| 1 |
UNCC[Veg+] |
|
| 2 |
accession |
|
| 3 |
herbarium |
|
| 4 |
usdaRank |
|
| 5 |
infrarank |
|
| 6 |
infraname |
|
| 7 |
SciName |
|
| 8 |
authors |
|
| 9 |
collector1 |
|
| 10 |
collector2 |
|
| 11 |
collector3 |
|
| 12 |
collectno |
|
| 13 |
collmonth |
|
| 14 |
collday |
|
| 15 |
collyear |
|
| 16 |
campus |
|
| 17 |
leaves |
|
| 18 |
flower |
|
| 19 |
fruit |
|
| 20 |
root |
|
| 21 |
comment1 |
|
| 22 |
comment2 |
|
| 23 |
comment3 |
|
| 24 |
comment4 |
|
| 25 |
loanto |
|
| 26 |
inorout |
|
| 27 |
sheetno |
|
| 28 |
filler |
|
| inputs/ACAD/Specimen/unmapped_terms.csv | ||
|---|---|---|
| 1 |
Veg+ |
|
| inputs/ACAD/Specimen/new_terms.csv | ||
|---|---|---|
| 1 |
ACAD[Veg+] |
|
| inputs/SALVIAS-CSV/Organism/new_terms.csv | ||
|---|---|---|
| 1 |
SALVIAS-CSV |
|
| 2 |
OBSERVATION_ID |
|
| 3 |
plot_code |
|
| 4 |
census_no |
|
| 5 |
census_date |
|
| 6 |
individual_code |
|
| 7 |
ind_id |
|
| 8 |
tag1 |
|
| 9 |
tag2 |
|
| 10 |
x_position |
|
| 11 |
y_position |
|
| 12 |
voucher_string |
|
| 13 |
coll_number |
|
| 14 |
collector_code |
|
| 15 |
coll_lastname |
|
| 16 |
coll_firstname |
|
| 17 |
det_type |
|
| 18 |
fam_status |
|
| 19 |
gen_status |
|
| 20 |
species_status |
|
| 21 |
specific_authority |
|
| 22 |
infra_rank_1 |
|
| 23 |
infra_ep_1 |
|
| 24 |
cf_aff |
|
| 25 |
comments |
|
| 26 |
no_of_individuals |
|
| 27 |
intercept_cm |
|
| 28 |
height_m |
|
| 29 |
ht_first_branch_m |
|
| 30 |
stem_tag1 |
|
| 31 |
stem_tag2 |
|
| 32 |
stem_dbh |
|
| 33 |
basal_diam |
|
| 34 |
stem_height_m |
|
| 35 |
stem_height_first_branch_m |
|
| 36 |
stem_canopy_form |
|
| 37 |
stem_canopy_position |
|
| 38 |
stem_liana_infestation |
|
| 39 |
orig_family |
|
| 40 |
orig_species |
|
| inputs/SALVIAS-CSV/Organism/unmapped_terms.csv | ||
|---|---|---|
| 1 |
Veg+ |
|
| 2 |
"" |
|
| 3 |
tag/_alt/1 |
|
| 4 |
previousTag/_alt/1 |
|
| 5 |
catalogNumber/_alt/2 |
|
| 6 |
catalogNumber/_alt/1 |
|
| 7 |
"" |
|
| 8 |
"" |
|
| 9 |
"" |
|
| 10 |
"" |
|
| 11 |
"" |
|
| 12 |
height/_alt/2 |
|
| 13 |
tag/_alt/2 |
|
| 14 |
previousTag/_alt/2 |
|
| 15 |
height/_alt/1 |
|
| inputs/SALVIAS-CSV/Plot/unmapped_terms.csv | ||
|---|---|---|
| 1 |
Veg+ |
|
| 2 |
"clay/_units:[default=""%"",to=]/value" |
|
| 3 |
"silt/_units:[default=""%"",to=]/value" |
|
| 4 |
"sand/_units:[default=""%"",to=]/value" |
|
| 5 |
"organic/_units:[default=""%"",to=]/value" |
|
| 6 |
"nitrogen/_units:[default=""%"",to=]/value" |
|
| 7 |
"phosphorus/_units:[default=""%"",to=]/value/_map:[""<1,5""=0,*=*]/value" |
|
| 8 |
"carbon/_units:[default=""%"",to=]/value" |
|
| 9 |
"potassium/_units:[default=""%"",to=]/value" |
|
| 10 |
"magnesium/_units:[default=""%"",to=]/value" |
|
| 11 |
"calcium/_units:[default=""%"",to=]/value" |
|
| 12 |
"sodium/_units:[default=""%"",to=]/value" |
|
| 13 |
"acidity/_units:[default=""%"",to=]/value/_map:[""<0.05""=0,*=*]/value" |
|
| 14 |
"baseSaturation/_units:[default=""%"",to=]/value" |
|
| 15 |
"" |
|
| 16 |
"" |
|
| inputs/SALVIAS-CSV/Plot/new_terms.csv | ||
|---|---|---|
| 1 |
SALVIAS-CSV |
|
| 2 |
project |
|
| 3 |
plot_code |
|
| 4 |
major_geo |
|
| 5 |
pol1 |
|
| 6 |
pol2 |
|
| 7 |
locality_description |
|
| 8 |
lat_decimal |
|
| 9 |
long_decimal |
|
| 10 |
elev_m |
|
| 11 |
elev_max_m |
|
| 12 |
elev_min_m |
|
| 13 |
temp_c |
|
| 14 |
precip_mm |
|
| 15 |
clay_percent |
|
| 16 |
silt_percent |
|
| 17 |
sand_percent |
|
| 18 |
organic_percent |
|
| 19 |
soil_N |
|
| 20 |
soil_P |
|
| 21 |
soil_C |
|
| 22 |
soil_K |
|
| 23 |
soil_Mg |
|
| 24 |
soil_Ca |
|
| 25 |
soil_Na |
|
| 26 |
soil_acidity |
|
| 27 |
soil_base |
|
| 28 |
soil_cation_cap |
|
| 29 |
soil_conductivity |
|
| 30 |
soil_texture |
|
| 31 |
holdridge_life_zone |
|
| 32 |
life_zone_code |
|
| 33 |
observation_type |
|
| 34 |
plot_methodology |
|
| 35 |
plot_area_ha |
|
| 36 |
recensused |
|
| 37 |
date_start |
|
| 38 |
date_finish |
|
| inputs/CVS/Organism/new_terms.csv | ||
|---|---|---|
| 1 |
CVS |
|
| 2 |
obsStartDate |
|
| 3 |
realLatitude |
|
| 4 |
realLongitude |
|
| 5 |
locationAccuracy-m |
|
| 6 |
publicLatitude |
|
| 7 |
publicLongitude |
|
| 8 |
confidentialityStatus |
|
| 9 |
currentTaxonName sec Weakley 2006 |
|
| 10 |
%cover |
|
| inputs/CVS/Organism/unmapped_terms.csv | ||
|---|---|---|
| 1 |
Veg+ |
|
| 2 |
OMIT |
|
| 3 |
OMIT |
|
| 4 |
"" |
|
| inputs/REMIB/Specimen/unmapped_terms.csv | ||
|---|---|---|
| 1 |
Veg+ |
|
| 2 |
"" |
|
| 3 |
"" |
|
| 4 |
"" |
|
| 5 |
"" |
|
| inputs/CTFS/StemObservation/new_terms.csv | ||
|---|---|---|
| 1 |
CTFS[Veg+] |
|
| 2 |
FamilyID |
|
| 3 |
GenusID |
|
| 4 |
SpeciesID |
|
| 5 |
SubSpeciesID |
|
| 6 |
TreeID |
|
| 7 |
MeasureID |
|
| 8 |
HOM |
|
| 9 |
PrimaryStem |
|
| 10 |
ExactDate |
|
| 11 |
StemDescription |
|
| 12 |
x |
|
| 13 |
y |
|
| 14 |
SubSpeciesCurrentTaxonFlag |
|
| 15 |
SubSpeciesObsoleteTaxonFlag |
|
| 16 |
SubSpeciesMnemonic |
|
| 17 |
SubSpeciesAuthority |
|
| 18 |
InfraSpecificLevel |
|
| 19 |
SpeciesCurrentTaxonFlag |
|
| 20 |
SpeciesObsoleteTaxonFlag |
|
| 21 |
SpeciesReferenceID |
|
| 22 |
SpeciesMnemonic |
|
| 23 |
SpeciesAuthority |
|
| 24 |
IDLevel |
|
| 25 |
FieldFamily |
|
| 26 |
Description |
|
| 27 |
GenusReferenceID |
|
| 28 |
GenusAuthority |
|
| 29 |
ReferenceID |
|
| 30 |
row_num |
|
| inputs/CTFS/Subplot/unmapped_terms.csv | ||
|---|---|---|
| 1 |
Veg+ |
|
| 2 |
OMIT |
|
| 3 |
"" |
|
| 4 |
"" |
|
| inputs/CTFS/PlotObservation/unmapped_terms.csv | ||
|---|---|---|
| 1 |
Veg+ |
|
| 2 |
"" |
|
| inputs/CTFS/TaxonOccurrence/unmapped_terms.csv | ||
|---|---|---|
| 1 |
Veg+ |
|
| 2 |
"" |
|
| 3 |
"" |
|
| 4 |
"" |
|
| 5 |
"" |
|
| 6 |
"" |
|
| 7 |
"" |
|
| 8 |
"" |
|
| 9 |
"" |
|
| 10 |
"" |
|
| 11 |
"" |
|
| 12 |
"" |
|
| 13 |
"" |
|
| 14 |
"" |
|
| 15 |
"" |
|
| 16 |
"" |
|
| 17 |
"" |
|
| 18 |
"" |
|
| 19 |
"" |
|
| 20 |
"" |
|
| 21 |
"" |
|
| 22 |
"" |
|
| inputs/CTFS/SubplotObservation/new_terms.csv | ||
|---|---|---|
| 1 |
CTFS[Veg+] |
|
| inputs/FIA/Organism/new_terms.csv | ||
|---|---|---|
| 1 |
FIA[Veg+] |
|
| 2 |
TreeTag |
|
| 3 |
MeasYear |
|
| 4 |
MeasMon |
|
| 5 |
MeasDay |
|
| 6 |
PlotCD |
|
| 7 |
HOM |
|
| inputs/SALVIAS/projects/unmapped_terms.csv | ||
|---|---|---|
| 1 |
Veg+ |
|
| 2 |
"" |
|
| 3 |
"" |
|
| 4 |
"" |
|
| 5 |
"" |
|
| 6 |
"" |
|
| 7 |
"" |
|
| 8 |
"" |
|
| inputs/SALVIAS/plotObservations/new_terms.csv | ||
|---|---|---|
| 1 |
SALVIAS |
|
| 2 |
PlotObsID |
|
| 3 |
PlotCode |
|
| 4 |
census_no |
|
| 5 |
census_date |
|
| 6 |
OrigRecordID |
|
| 7 |
Line |
|
| 8 |
Ind |
|
| 9 |
ind_id |
|
| 10 |
tag1 |
|
| 11 |
tag2 |
|
| 12 |
x_position |
|
| 13 |
y_position |
|
| 14 |
dist |
|
| 15 |
perp_dist |
|
| 16 |
SourceVoucher |
|
| 17 |
coll_number |
|
| 18 |
collector_code |
|
| 19 |
coll_inits |
|
| 20 |
coll_lastname |
|
| 21 |
coll_firstname |
|
| 22 |
DetType |
|
| 23 |
det_by |
|
| 24 |
fam_status |
|
| 25 |
gen_status |
|
| 26 |
name_status |
|
| 27 |
SpAuthStatus |
|
| 28 |
GenAuth |
|
| 29 |
auth |
|
| 30 |
infra_rank_1 |
|
| 31 |
infra_ep_1 |
|
| 32 |
infra_auth_1 |
|
| 33 |
common_name |
|
| 34 |
morphoname |
|
| 35 |
species_code |
|
| 36 |
height_class |
|
| 37 |
height_m |
|
| 38 |
height_m_commercial |
|
| 39 |
ht_first_branch_m |
|
| 40 |
NoInd |
|
| 41 |
intercept_cm |
|
| 42 |
cfaff |
|
| 43 |
other_annotations |
|
| 44 |
morphocf |
|
| 45 |
IsMorpho |
|
| 46 |
OrigFamily |
|
| 47 |
OrigGenus |
|
| 48 |
OrigSpecies |
|
| 49 |
OrigAuth |
|
| 50 |
phenology |
|
| 51 |
temp_dbh |
|
| 52 |
temp_liandbh |
|
| 53 |
tmp_del |
|
| inputs/ARIZ/Specimen/new_terms.csv | ||
|---|---|---|
| 1 |
ARIZ[Veg+] |
|
| 2 |
CatalogNumberNumeric |
|
| 3 |
TimeCollected |
|
| 4 |
VerbatimCollectingDate |
|
| 5 |
HorizontalDatum |
|
| 6 |
OriginalCoordinateSystem |
|
| 7 |
GeorefMethod |
|
| 8 |
LatLongComments |
|
| 9 |
IdentificationModifier |
|
| 10 |
Tissues |
|
| 11 |
AgeClass |
|
| 12 |
GenBankNum |
|
| 13 |
OtherCatalogNumbers |
|
| 14 |
RelatedCatalogedItems |
|
| inputs/NCU-NCSC/Specimen/new_terms.csv | ||
|---|---|---|
| 1 |
NCU-NCSC[Veg+] |
|
| 2 |
Accession Number |
|
| 3 |
SeriesName |
|
| 4 |
Barcode |
|
| 5 |
Full Taxon Name |
|
| 6 |
Collect Date |
|
| 7 |
Lat (-=S) |
|
| 8 |
Long (-=W) |
|
| 9 |
Accuracy |
|
| 10 |
FIPS |
|
| 11 |
Alt N/S |
|
| 12 |
Alt E/W |
|
| 13 |
Format |
|
| 14 |
Typology |
|
| inputs/GBIF/Specimen/unmapped_terms.csv | ||
|---|---|---|
| 1 |
Veg+ |
|
| 2 |
dcterms:modified |
|
| inputs/input.Makefile | ||
|---|---|---|
| 282 | 282 |
|
| 283 | 283 |
# Via maps cleanup |
| 284 | 284 |
ifneq ($(filter %/.map.csv.last_cleanup,$(MAKECMDGOALS)),) |
| 285 |
%/.map.csv.last_cleanup: %/map.csv $(coreMap) $(vocab) $(dict) |
|
| 285 |
%/.map.csv.last_cleanup %/unmapped_terms.csv %/new_terms.csv: %/map.csv\ |
|
| 286 |
$(coreMap) $(vocab) $(dict) |
|
| 286 | 287 |
$(bin)/in_place $< $(bin)/canon 1 $(word 3,$+) |
| 287 | 288 |
$(bin)/in_place $< $(bin)/translate 1 $(word 4,$+) |
| 288 | 289 |
$(bin)/in_place $< env ignore=1 $(bin)/subtract $(word 2,$+) 0 1 2 |
| 290 |
$(bin)/filter_out_ci 1 $(word 3,$+) <$<|$(bin)/cols 1 >$*/unmapped_terms.csv |
|
| 291 |
$(bin)/filter_out_ci 0 $(word 3,$+) <$<|$(bin)/cols 0 >$*/new_terms.csv |
|
| 289 | 292 |
touch $@ |
| 290 | 293 |
# Include comment column so commented mappings are never removed |
| 291 | 294 |
else |
| inputs/MO/Specimen/unmapped_terms.csv | ||
|---|---|---|
| 1 |
Veg+ |
|
| inputs/MO/Specimen/new_terms.csv | ||
|---|---|---|
| 1 |
MO[Veg+] |
|
| 2 |
convertednotes |
|
| inputs/SpeciesLink/Specimen/new_terms.csv | ||
|---|---|---|
| 1 |
"SpeciesLink[Veg+,dwc_dwcore_,dwc_curatorial_,dwc_geospatial_,http__purl_org_,dwc_terms_,conceptual_darwin_2003_1_0_]" |
|
| 2 |
AuthorYearOfScientificName |
|
| 3 |
DayOfYear |
|
| 4 |
dc_terms_modified |
|
| inputs/VegBank/observation_/unmapped_terms.csv | ||
|---|---|---|
| 1 |
Veg+ |
|
| 2 |
"" |
|
| 3 |
"" |
|
| 4 |
"" |
|
| 5 |
"" |
|
| 6 |
"" |
|
| 7 |
"" |
|
| 8 |
"" |
|
| 9 |
"" |
|
| 10 |
"" |
|
| 11 |
"" |
|
| 12 |
"" |
|
| 13 |
"" |
|
| 14 |
"" |
|
| 15 |
"" |
|
| 16 |
"" |
|
| 17 |
"" |
|
| 18 |
"" |
|
| 19 |
"" |
|
| 20 |
"" |
|
| 21 |
"" |
|
| 22 |
"" |
|
| 23 |
"" |
|
| 24 |
"" |
|
| 25 |
"" |
|
| 26 |
"" |
|
| 27 |
"" |
|
| 28 |
"" |
|
| 29 |
"" |
|
| 30 |
"" |
|
| 31 |
"" |
|
| 32 |
"" |
|
| 33 |
"" |
|
| 34 |
"" |
|
| 35 |
"" |
|
| 36 |
"" |
|
| 37 |
"" |
|
| 38 |
"" |
|
| 39 |
"" |
|
| 40 |
"" |
|
| 41 |
"" |
|
| 42 |
"" |
|
| 43 |
"" |
|
| 44 |
"" |
|
| 45 |
"" |
|
| 46 |
"" |
|
| 47 |
"" |
|
| 48 |
"" |
|
| 49 |
"" |
|
| 50 |
"" |
|
| 51 |
"" |
|
| 52 |
"" |
|
| 53 |
"" |
|
| 54 |
"" |
|
| 55 |
"" |
|
| 56 |
"" |
|
| 57 |
"" |
|
| 58 |
"" |
|
| 59 |
"" |
|
| 60 |
"" |
|
| 61 |
"" |
|
| 62 |
"" |
|
| 63 |
"" |
|
| 64 |
"" |
|
| 65 |
"" |
|
| 66 |
"" |
|
| 67 |
"" |
|
| 68 |
"" |
|
| 69 |
"" |
|
| 70 |
"" |
|
| 71 |
"" |
|
| 72 |
"" |
|
| 73 |
"" |
|
| 74 |
"" |
|
| 75 |
"" |
|
| 76 |
"" |
|
| 77 |
"" |
|
| 78 |
"" |
|
| 79 |
"" |
|
| 80 |
"" |
|
| 81 |
"" |
|
| 82 |
"" |
|
| 83 |
"" |
|
| 84 |
"" |
|
| 85 |
"" |
|
| 86 |
"" |
|
| 87 |
"" |
|
| 88 |
"" |
|
| 89 |
"" |
|
| 90 |
"" |
|
| 91 |
"" |
|
| 92 |
"" |
|
| 93 |
"" |
|
| 94 |
"" |
|
| 95 |
"" |
|
| 96 |
"" |
|
| 97 |
"" |
|
| 98 |
"" |
|
| 99 |
"" |
|
| 100 |
"" |
|
| 101 |
"" |
|
| inputs/QMOR/Specimen/new_terms.csv | ||
|---|---|---|
| 1 |
QMOR[Veg+] |
|
| inputs/VegBank/taxonobservation_/unmapped_terms.csv | ||
|---|---|---|
| 1 |
Veg+ |
|
| 2 |
"" |
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"" |
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| inputs/VegBank/plot_/new_terms.csv | ||
|---|---|---|
| 1 |
VegBank[Veg+] |
|
| 2 |
authorplotcode |
|
| 3 |
reference_id |
|
| 4 |
parent_id |
|
| 5 |
reallatitude |
|
| 6 |
reallongitude |
|
| 7 |
locationaccuracy |
|
| 8 |
confidentialitystatus |
|
| 9 |
confidentialityreason |
|
| 10 |
authore |
|
| 11 |
authorn |
|
| 12 |
authorzone |
|
| 13 |
authordatum |
|
| 14 |
authorlocation |
|
| 15 |
azimuth |
|
| 16 |
dsgpoly |
|
| 17 |
shape |
|
| 18 |
area |
|
| 19 |
standsize |
|
| 20 |
placementmethod |
|
| 21 |
permanence |
|
| 22 |
layoutnarrative |
|
| 23 |
elevationaccuracy |
|
| 24 |
elevationrange |
|
| 25 |
topoposition |
|
| 26 |
surficialdeposits |
|
| 27 |
rocktype |
|
| 28 |
submitter_surname |
|
| 29 |
submitter_givenname |
|
| 30 |
submitter_email |
|
| 31 |
notespublic |
|
| 32 |
notesmgt |
|
| 33 |
revisions |
|
| 34 |
dateentered |
|
| 35 |
emb_plot |
|
| 36 |
plotrationalenarrative |
|
| 37 |
accessioncode |
|
| 38 |
area|country|territory |
|
| 39 |
region|state|province |
|
| 40 |
quadrangle |
|
| 41 |
Geographic Name |
|
| 42 |
row_num |
|
| README.TXT | ||
|---|---|---|
| 94 | 94 |
Auto-create the map spreadsheets: |
| 95 | 95 |
make inputs/<datasrc>/; make inputs/<datasrc>/ |
| 96 | 96 |
Note: Must be run twice to properly bootstrap all maps. |
| 97 |
svn add inputs/<datasrc>/*/{,.}{header,src,map*,VegBIEN}.csv{,.*}
|
|
| 97 |
svn add inputs/<datasrc>/*/{,.}{header,src,map*,*terms,VegBIEN}.csv{,.*}
|
|
| 98 | 98 |
Install the staging tables: |
| 99 | 99 |
make inputs/<datasrc>/reinstall quiet=1 & |
| 100 | 100 |
To view progress: tail -f inputs/<datasrc>/<table>/logs/install.log.sql |
| inputs/VegBank/taxonobservation_/new_terms.csv | ||
|---|---|---|
| 1 |
VegBank[Veg+] |
|
| 2 |
plantconcept_id |
|
| 3 |
taxonobservation_id |
|
| 4 |
observation_id |
|
| 5 |
authorplantname |
|
| 6 |
taxonobservation_reference_id |
|
| 7 |
taxoninferencearea |
|
| 8 |
emb_taxonobservation |
|
| 9 |
int_origplantconcept_id |
|
| 10 |
int_origplantscifull |
|
| 11 |
int_origplantscinamenoauth |
|
| 12 |
int_origplantcommon |
|
| 13 |
int_origplantcode |
|
| 14 |
int_currplantconcept_id |
|
| 15 |
int_currplantscifull |
|
| 16 |
int_currplantscinamenoauth |
|
| 17 |
int_currplantcommon |
|
| 18 |
int_currplantcode |
|
| 19 |
taxonobservation_accessioncode |
|
| 20 |
taxoninterpretation_id |
|
| 21 |
stemlocation_id |
|
| 22 |
taxoninterpretation_plantname_id |
|
| 23 |
party_id |
|
| 24 |
role_id |
|
| 25 |
interpretationtype |
|
| 26 |
reference_id |
|
| 27 |
originalinterpretation |
|
| 28 |
currentinterpretation |
|
| 29 |
taxonconfidence |
|
| 30 |
collector_id |
|
| 31 |
collectionnumber |
|
| 32 |
museum_id |
|
| 33 |
museumaccessionnumber |
|
| 34 |
grouptype |
|
| 35 |
notespublic |
|
| 36 |
notesmgt |
|
| 37 |
revisions |
|
| 38 |
interpretationdate |
|
| 39 |
collectiondate |
|
| 40 |
emb_taxoninterpretation |
|
| 41 |
taxoninterpretation_accessioncode |
|
| 42 |
plantname_id |
|
| 43 |
plantconcept__reference_id |
|
| 44 |
plantname |
|
| 45 |
plantcode |
|
| 46 |
plantdescription |
|
| 47 |
d_obscount |
|
| 48 |
d_currentaccepted |
|
| 49 |
plantconcept__accessioncode |
|
| 50 |
Subkingdom |
|
| 51 |
Superdivision |
|
| 52 |
Division |
|
| 53 |
Subdivision |
|
| 54 |
Subclass |
|
| 55 |
Variety |
|
| 56 |
Forma |
|
| 57 |
row_num |
|
| inputs/VegBank/plot_/unmapped_terms.csv | ||
|---|---|---|
| 1 |
Veg+ |
|
| 2 |
"" |
|
| 3 |
parentPlotID |
|
| 4 |
OMIT |
|
| 5 |
OMIT |
|
| 6 |
"" |
|
| 7 |
"" |
|
| 8 |
"" |
|
| 9 |
"" |
|
| 10 |
"" |
|
| 11 |
"" |
|
| 12 |
"" |
|
| 13 |
"" |
|
| 14 |
"" |
|
| 15 |
"" |
|
| 16 |
"" |
|
| 17 |
"" |
|
| 18 |
"" |
|
| 19 |
"" |
|
| 20 |
"" |
|
| 21 |
"" |
|
| 22 |
"" |
|
| 23 |
"" |
|
| 24 |
"" |
|
| 25 |
"" |
|
| 26 |
"" |
|
| 27 |
"" |
|
| 28 |
"" |
|
| 29 |
"" |
|
| 30 |
"" |
|
Also available in: Unified diff
input.Makefile: Maps building: %/.map.csv.last_cleanup: Generate reports on new and unmapped terms in map.csv