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Revision 4596

Added by Aaron Marcuse-Kubitza over 12 years ago

input.Makefile: Maps building: %/.map.csv.last_cleanup: $(newTerms): Remove the CSV header from the terms lists so that multiple terms lists can easily be appended together

View differences:

inputs/REMIB/Specimen/unmapped_terms.csv
1 
Veg+
2 1 
""
3 2 
""
4 3 
""
inputs/CTFS/StemObservation/unmapped_terms.csv
1 
Veg+
2 1 
""
3 2 
""
4 3 
""
inputs/CTFS/Subplot/unmapped_terms.csv
1 
Veg+
2 1 
OMIT
3 2 
""
4 3 
""
inputs/CTFS/PlotObservation/unmapped_terms.csv
1 
Veg+
2 1 
""
inputs/CTFS/TaxonOccurrence/unmapped_terms.csv
1 
Veg+
2 1 
""
3 2 
""
4 3 
""
inputs/CTFS/Plot/new_terms.csv
1 
CTFS[Veg+]
2 1 
CountryID
3 2 
ReferenceX
4 3 
ReferenceY
inputs/FIA/Organism/unmapped_terms.csv
1 
Veg+
2 1 
""
inputs/SALVIAS/projects/new_terms.csv
1 
SALVIAS[Veg+]
2 1 
project_pi
3 2 
allow_download_all
4 3 
ipr_specific
inputs/MT/Specimen/new_terms.csv
1 
MT[Veg+]
inputs/MT/Specimen/unmapped_terms.csv
1 
Veg+
inputs/XAL/Specimen/new_terms.csv
1 
"XAL[Veg+,darwin:]:/content/record/"
inputs/XAL/Specimen/unmapped_terms.csv
1 
Veg+
2 1 
recordNumber/_alt/1
3 2 
recordNumber/_alt/2
inputs/TEAM/VL/new_terms.csv
1 
TEAM[Veg+]
2 1 
SiteName
3 2 
1haPlotCode
4 3 
ObservationDate
inputs/TEAM/VL/unmapped_terms.csv
1 
Veg+
2 1 
""
3 2 
""
4 3 
""
inputs/TEAM/VT/new_terms.csv
1 
TEAM[Veg+]
2 1 
ObservationDate
3 2 
Collectors
4 3 
dbh_pom
inputs/TEAM/VT/unmapped_terms.csv
1 
Veg+
2 1 
""
3 2 
""
4 3 
""
inputs/NY/Specimen/new_terms.csv
1 
NY[Veg+]
2 1 
key
3 2 
PlantFungusDescription
4 3 
Substrate
inputs/NY/Specimen/unmapped_terms.csv
1 
Veg+
2 1 
""
3 2 
OMIT
4 3 
Locality/_merge/1
inputs/Madidi/Organism/new_terms.csv
1 
Madidi[Veg+]
2 1 
Expedition
3 2 
Inventory name
4 3 
Number of inventory (general)
inputs/Madidi/Organism/unmapped_terms.csv
1 
Veg+
2 1 
""
3 2 
""
4 3 
""
inputs/Madidi/Plot/new_terms.csv
1 
Madidi[Veg+]
2 1 
Inventory number
3 2 
Expedition number
4 3 
Expedition name
inputs/Madidi/Plot/unmapped_terms.csv
1 
Veg+
2 1 
""
3 2 
""
4 3 
""
inputs/UNCC/Specimen/new_terms.csv
1 
UNCC[Veg+]
2 1 
accession
3 2 
herbarium
4 3 
usdaRank
inputs/UNCC/Specimen/unmapped_terms.csv
1 
Veg+
2 1 
taxonRank/_alt/1
3 2 
taxonRank/_alt/2
4 3 
Collector/_merge/1
inputs/ACAD/Specimen/new_terms.csv
1 
ACAD[Veg+]
inputs/ACAD/Specimen/unmapped_terms.csv
1 
Veg+
inputs/SALVIAS-CSV/Organism/new_terms.csv
1 
SALVIAS-CSV
2 1 
OBSERVATION_ID
3 2 
plot_code
4 3 
census_no
inputs/SALVIAS-CSV/Organism/unmapped_terms.csv
1 
Veg+
2 1 
""
3 2 
tag/_alt/1
4 3 
previousTag/_alt/1
inputs/SALVIAS-CSV/Plot/new_terms.csv
1 
SALVIAS-CSV
2 1 
project
3 2 
plot_code
4 3 
major_geo
inputs/SALVIAS-CSV/Plot/unmapped_terms.csv
1 
Veg+
2 1 
"clay/_units:[default=""%"",to=]/value"
3 2 
"silt/_units:[default=""%"",to=]/value"
4 3 
"sand/_units:[default=""%"",to=]/value"
inputs/CVS/Organism/new_terms.csv
1 
CVS
2 1 
obsStartDate
3 2 
realLatitude
4 3 
realLongitude
inputs/CVS/Organism/unmapped_terms.csv
1 
Veg+
2 1 
OMIT
3 2 
OMIT
4 3 
""
inputs/REMIB/Specimen/new_terms.csv
1 
REMIB[Veg+]
2 1 
acronym
3 2 
accession_number
4 3 
long_deg
inputs/CTFS/StemObservation/new_terms.csv
1 
CTFS[Veg+]
2 1 
FamilyID
3 2 
GenusID
4 3 
SpeciesID
inputs/CTFS/Subplot/new_terms.csv
1 
CTFS[Veg+]
2 1 
DimX
3 2 
DimY
inputs/CTFS/PlotObservation/new_terms.csv
1 
CTFS[Veg+]
2 1 
Description
inputs/CTFS/TaxonOccurrence/new_terms.csv
1 
CTFS[Veg+]
2 1 
FamilyID
3 2 
GenusID
4 3 
SpeciesID
inputs/CTFS/SubplotObservation/unmapped_terms.csv
1 
Veg+
inputs/FIA/Organism/new_terms.csv
1 
FIA[Veg+]
2 1 
TreeTag
3 2 
MeasYear
4 3 
MeasMon
inputs/SALVIAS/plotMetadata/unmapped_terms.csv
1 
Veg+
2 1 
""
3 2 
""
4 3 
""
inputs/SALVIAS/stems/new_terms.csv
1 
SALVIAS
2 1 
origrecord_id_stems
3 2 
PlotObsID
4 3 
NoInd
inputs/CTFS/SubplotObservation/new_terms.csv
1 
CTFS[Veg+]
inputs/CTFS/Plot/unmapped_terms.csv
1 
Veg+
2 1 
""
3 2 
""
4 3 
""
inputs/SALVIAS/plotMetadata/new_terms.csv
1 
SALVIAS
2 1 
orig_filename
3 2 
AccessCode
4 3 
PrimOwnerID
inputs/SALVIAS/projects/unmapped_terms.csv
1 
Veg+
2 1 
""
3 2 
""
4 3 
""
inputs/SALVIAS/plotObservations/new_terms.csv
1 
SALVIAS
2 1 
PlotObsID
3 2 
PlotCode
4 3 
census_no
inputs/ARIZ/Specimen/new_terms.csv
1 
ARIZ[Veg+]
2 1 
CatalogNumberNumeric
3 2 
TimeCollected
4 3 
VerbatimCollectingDate
inputs/NCU-NCSC/Specimen/new_terms.csv
1 
NCU-NCSC[Veg+]
2 1 
Accession Number
3 2 
SeriesName
4 3 
Barcode
inputs/SALVIAS/plotObservations/unmapped_terms.csv
1 
Veg+
2 1 
""
3 2 
""
4 3 
""
inputs/ARIZ/Specimen/unmapped_terms.csv
1 
Veg+
2 1 
CatalogNumber/_alt/2
3 2 
CatalogNumber/_alt/1
4 3 
OMIT
inputs/NCU-NCSC/Specimen/unmapped_terms.csv
1 
Veg+
2 1 
"Latitude/_replace:[""\?$""=]/value"
3 2 
"Longitude/_replace:[""\?$""=]/value"
4 3 
""
inputs/MO/Specimen/unmapped_terms.csv
1 
Veg+
inputs/VegBank/observation_/new_terms.csv
1 
VegBank[Veg+]
2 1 
observation_id
3 2 
previousobs_id
4 3 
dateaccuracy
inputs/QMOR/Specimen/new_terms.csv
1 
QMOR[Veg+]
inputs/MO/Specimen/new_terms.csv
1 
MO[Veg+]
2 1 
convertednotes
inputs/VegBank/taxonobservation_/unmapped_terms.csv
1 
Veg+
2 1 
""
3 2 
""
4 3 
""
inputs/VegBank/plot_/unmapped_terms.csv
1 
Veg+
2 1 
""
3 2 
parentPlotID
4 3 
OMIT
inputs/SALVIAS/stems/unmapped_terms.csv
1 
Veg+
2 1 
""
3 2 
""
inputs/U/Specimen/unmapped_terms.csv
1 
Veg+
2 1 
Collector/_merge/1
3 2 
""
4 3 
""
inputs/GBIF/Specimen/unmapped_terms.csv
1 
Veg+
2 1 
dcterms:modified
inputs/SpeciesLink/Specimen/unmapped_terms.csv
1 
Veg+
2 1 
ScientificNameAuthor/_alt/3
3 2 
ScientificNameAuthor/_alt/2
4 3 
ScientificNameAuthor/_alt/1
inputs/VegBank/taxonobservation_/new_terms.csv
1 
VegBank[Veg+]
2 1 
plantconcept_id
3 2 
taxonobservation_id
4 3 
observation_id
inputs/VegBank/plot_/new_terms.csv
1 
VegBank[Veg+]
2 1 
authorplotcode
3 2 
reference_id
4 3 
parent_id
inputs/U/Specimen/new_terms.csv
1 
U[Veg+]
2 1 
Barcode
3 2 
Prefix
4 3 
Number
inputs/GBIF/Specimen/new_terms.csv
1 
GBIF[Veg+]
2 1 
LatestDateCollected
3 2 
InstitutionCD
4 3 
CollectionCD
inputs/SpeciesLink/Specimen/new_terms.csv
1 
"SpeciesLink[Veg+,dwc_dwcore_,dwc_curatorial_,dwc_geospatial_,http__purl_org_,dwc_terms_,conceptual_darwin_2003_1_0_]"
2 1 
AuthorYearOfScientificName
3 2 
DayOfYear
4 3 
dc_terms_modified
inputs/input.Makefile
292 292 
	touch $@
293 293 
# Include comment column so commented mappings are never removed
294 294 

  		




  295
  
  
    
newTerms = $(bin)/filter_out_ci $(1) $(word 3,$+) <$<|$(bin)/cols $(1)


  		




  
  295
  
    
newTerms = $(bin)/filter_out_ci $(1) $(word 3,$+) <$<|$(bin)/cols $(1)|tail +2


  		




  296
  296
  
    
else


  		




  297
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%/map.csv: %/src.csv _always


  		




  298
  298
  
    
	$(if $(wildcard $@),,$(if $(wildcard $<),$(CP) $< $@))


  		












  

    
      inputs/VegBank/observation_/unmapped_terms.csv
    
  





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Veg+


  		




  2
  1
  
    
""


  		




  3
  2
  
    
""


  		




  4
  3
  
    
""


  		












  

    
      inputs/QMOR/Specimen/unmapped_terms.csv
    
  





  1
  
  
    
Veg+


  		












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