Revision 4621
Added by Aaron Marcuse-Kubitza over 12 years ago
| inputs/MT/Specimen/VegBIEN.csv | ||
|---|---|---|
| 1 |
MT[Veg+],VegBIEN:,Comments |
|
| 1 |
MT[Veg+],VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
|
|
| 2 | 2 |
id,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1", |
| 3 | 3 |
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1", |
| 4 | 4 |
collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1", |
| inputs/MT/Specimen/test.xml.ref | ||
|---|---|---|
| 1 | 1 |
Put template: |
| 2 | 2 |
<VegBIEN> |
| 3 |
<location id="-1">
|
|
| 4 |
<authorlocationcode>
|
|
| 5 |
<_alt>
|
|
| 6 |
<1>$id</1>
|
|
| 7 |
<2>
|
|
| 8 |
<_join>
|
|
| 9 |
<1>$institutionCode</1>
|
|
| 3 |
<_simplifyPath id="-1">
|
|
| 4 |
<next>parent_id</next>
|
|
| 5 |
<path>
|
|
| 6 |
<location>
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|
| 7 |
<authorlocationcode>
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|
| 8 |
<_alt>
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|
| 9 |
<1>$id</1>
|
|
| 10 | 10 |
<2> |
| 11 | 11 |
<_join> |
| 12 |
<1>$collectionCode</1> |
|
| 13 |
<2>$collectionID</2> |
|
| 12 |
<1>$institutionCode</1> |
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| 13 |
<2> |
|
| 14 |
<_join> |
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| 15 |
<1>$collectionCode</1> |
|
| 16 |
<2>$collectionID</2> |
|
| 17 |
</_join> |
|
| 18 |
</2> |
|
| 14 | 19 |
</_join> |
| 15 | 20 |
</2> |
| 16 |
</_join> |
|
| 17 |
</2> |
|
| 18 |
</_alt> |
|
| 19 |
</authorlocationcode> |
|
| 20 |
<locationdetermination> |
|
| 21 |
<namedplace_id> |
|
| 22 |
<_simplifyPath> |
|
| 23 |
<next>parent_id</next> |
|
| 24 |
<path> |
|
| 25 |
<namedplace> |
|
| 26 |
<rank>county</rank> |
|
| 27 |
<parent_id> |
|
| 21 |
</_alt> |
|
| 22 |
</authorlocationcode> |
|
| 23 |
<locationdetermination> |
|
| 24 |
<namedplace_id> |
|
| 25 |
<_simplifyPath> |
|
| 26 |
<next>parent_id</next> |
|
| 27 |
<path> |
|
| 28 | 28 |
<namedplace> |
| 29 |
<rank>stateProvince</rank>
|
|
| 29 |
<rank>county</rank>
|
|
| 30 | 30 |
<parent_id> |
| 31 | 31 |
<namedplace> |
| 32 |
<rank>country</rank>
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|
| 32 |
<rank>stateProvince</rank>
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|
| 33 | 33 |
<parent_id> |
| 34 | 34 |
<namedplace> |
| 35 |
<rank>continent</rank> |
|
| 36 |
<placename>$continent</placename> |
|
| 35 |
<rank>country</rank> |
|
| 36 |
<parent_id> |
|
| 37 |
<namedplace> |
|
| 38 |
<rank>continent</rank> |
|
| 39 |
<placename>$continent</placename> |
|
| 40 |
</namedplace> |
|
| 41 |
</parent_id> |
|
| 37 | 42 |
</namedplace> |
| 38 | 43 |
</parent_id> |
| 39 | 44 |
</namedplace> |
| 40 | 45 |
</parent_id> |
| 41 | 46 |
</namedplace> |
| 42 |
</parent_id> |
|
| 43 |
</namedplace> |
|
| 44 |
</path> |
|
| 45 |
</_simplifyPath> |
|
| 46 |
</namedplace_id> |
|
| 47 |
</locationdetermination> |
|
| 48 |
<locationevent> |
|
| 49 |
<taxonoccurrence> |
|
| 50 |
<aggregateoccurrence> |
|
| 51 |
<count>$individualCount</count> |
|
| 52 |
<plantobservation> |
|
| 53 |
<specimenreplicate> |
|
| 54 |
<collectioncode_dwc> |
|
| 55 |
<_join> |
|
| 56 |
<1>$collectionCode</1> |
|
| 57 |
<2>$collectionID</2> |
|
| 58 |
</_join> |
|
| 59 |
</collectioncode_dwc> |
|
| 60 |
<institution_id><party><organizationname>$institutionCode</organizationname></party></institution_id> |
|
| 61 |
<sourceaccessioncode>$id</sourceaccessioncode> |
|
| 62 |
</specimenreplicate> |
|
| 63 |
</plantobservation> |
|
| 64 |
</aggregateoccurrence> |
|
| 65 |
<iscultivated> |
|
| 66 |
<_map> |
|
| 67 |
<cultivated>t</cultivated> |
|
| 68 |
<wild>f</wild> |
|
| 69 |
<*></*> |
|
| 70 |
<value>$establishmentMeans</value> |
|
| 71 |
</_map> |
|
| 72 |
</iscultivated> |
|
| 73 |
<isnative> |
|
| 74 |
<_map> |
|
| 75 |
<native>t</native> |
|
| 76 |
<exotic>f</exotic> |
|
| 77 |
<*></*> |
|
| 78 |
<value>$establishmentMeans</value> |
|
| 79 |
</_map> |
|
| 80 |
</isnative> |
|
| 81 |
<taxondetermination> |
|
| 82 |
<plantconcept_id> |
|
| 83 |
<plantconcept> |
|
| 84 |
<plantname_id> |
|
| 85 |
<_simplifyPath> |
|
| 86 |
<next>parent_id</next> |
|
| 87 |
<path> |
|
| 88 |
<plantname> |
|
| 89 |
<rank>binomial</rank> |
|
| 90 |
<parent_id> |
|
| 47 |
</path> |
|
| 48 |
</_simplifyPath> |
|
| 49 |
</namedplace_id> |
|
| 50 |
</locationdetermination> |
|
| 51 |
<locationevent> |
|
| 52 |
<taxonoccurrence> |
|
| 53 |
<aggregateoccurrence> |
|
| 54 |
<count>$individualCount</count> |
|
| 55 |
<plantobservation> |
|
| 56 |
<specimenreplicate> |
|
| 57 |
<collectioncode_dwc> |
|
| 58 |
<_join> |
|
| 59 |
<1>$collectionCode</1> |
|
| 60 |
<2>$collectionID</2> |
|
| 61 |
</_join> |
|
| 62 |
</collectioncode_dwc> |
|
| 63 |
<institution_id><party><organizationname>$institutionCode</organizationname></party></institution_id> |
|
| 64 |
<sourceaccessioncode>$id</sourceaccessioncode> |
|
| 65 |
</specimenreplicate> |
|
| 66 |
</plantobservation> |
|
| 67 |
</aggregateoccurrence> |
|
| 68 |
<iscultivated> |
|
| 69 |
<_map> |
|
| 70 |
<cultivated>t</cultivated> |
|
| 71 |
<wild>f</wild> |
|
| 72 |
<*></*> |
|
| 73 |
<value>$establishmentMeans</value> |
|
| 74 |
</_map> |
|
| 75 |
</iscultivated> |
|
| 76 |
<isnative> |
|
| 77 |
<_map> |
|
| 78 |
<native>t</native> |
|
| 79 |
<exotic>f</exotic> |
|
| 80 |
<*></*> |
|
| 81 |
<value>$establishmentMeans</value> |
|
| 82 |
</_map> |
|
| 83 |
</isnative> |
|
| 84 |
<taxondetermination> |
|
| 85 |
<plantconcept_id> |
|
| 86 |
<plantconcept> |
|
| 87 |
<plantname_id> |
|
| 88 |
<_simplifyPath> |
|
| 89 |
<next>parent_id</next> |
|
| 90 |
<path> |
|
| 91 | 91 |
<plantname> |
| 92 |
<rank>authority</rank>
|
|
| 92 |
<rank>binomial</rank>
|
|
| 93 | 93 |
<parent_id> |
| 94 | 94 |
<plantname> |
| 95 |
<rank>subspecies</rank>
|
|
| 95 |
<rank>authority</rank>
|
|
| 96 | 96 |
<parent_id> |
| 97 | 97 |
<plantname> |
| 98 |
<rank>species</rank> |
|
| 98 |
<rank>subspecies</rank>
|
|
| 99 | 99 |
<parent_id> |
| 100 | 100 |
<plantname> |
| 101 |
<rank>genus</rank> |
|
| 102 |
<plantname>$genus</plantname> |
|
| 101 |
<rank>species</rank> |
|
| 103 | 102 |
<parent_id> |
| 104 | 103 |
<plantname> |
| 105 |
<rank>family</rank> |
|
| 106 |
<plantname>$family</plantname> |
|
| 104 |
<rank>genus</rank> |
|
| 105 |
<plantname>$genus</plantname> |
|
| 106 |
<parent_id> |
|
| 107 |
<plantname> |
|
| 108 |
<rank>family</rank> |
|
| 109 |
<plantname>$family</plantname> |
|
| 110 |
</plantname> |
|
| 111 |
</parent_id> |
|
| 107 | 112 |
</plantname> |
| 108 | 113 |
</parent_id> |
| 109 | 114 |
</plantname> |
| ... | ... | |
| 113 | 118 |
</plantname> |
| 114 | 119 |
</parent_id> |
| 115 | 120 |
</plantname> |
| 116 |
</parent_id>
|
|
| 117 |
</plantname>
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|
| 118 |
</path>
|
|
| 119 |
</_simplifyPath>
|
|
| 120 |
</plantname_id>
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| 121 |
</plantconcept>
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| 122 |
</plantconcept_id>
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|
| 123 |
</taxondetermination>
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|
| 124 |
</taxonoccurrence>
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|
| 125 |
</locationevent>
|
|
| 126 |
<locationnarrative>$locality</locationnarrative>
|
|
| 127 |
</location>
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|
| 121 |
</path>
|
|
| 122 |
</_simplifyPath>
|
|
| 123 |
</plantname_id>
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| 124 |
</plantconcept>
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| 125 |
</plantconcept_id>
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| 126 |
</taxondetermination>
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| 127 |
</taxonoccurrence>
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|
| 128 |
</locationevent>
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|
| 129 |
<locationnarrative>$locality</locationnarrative>
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|
| 130 |
</location>
|
|
| 131 |
</path>
|
|
| 132 |
</_simplifyPath>
|
|
| 128 | 133 |
</VegBIEN> |
| 129 | 134 |
Inserted 22 new rows into database |
| inputs/XAL/Specimen/VegBIEN.csv | ||
|---|---|---|
| 1 |
"XAL[Veg+,darwin:]:/content/record/",VegBIEN:,Comments |
|
| 1 |
"XAL[Veg+,darwin:]:/content/record/",VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
|
|
| 2 | 2 |
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1", |
| 3 | 3 |
collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1", |
| 4 | 4 |
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else", |
| inputs/TEAM/VL/VegBIEN.csv | ||
|---|---|---|
| 1 |
TEAM[Veg+],VegBIEN:,Comments |
|
| 1 |
TEAM[Veg+],VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
|
|
| 2 | 2 |
subplot,"/location/_if[@name=""if subplot""]/cond/_exists/_first/2", |
| 3 | 3 |
1haPlotCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1", |
| 4 | 4 |
id,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1", |
| inputs/TEAM/VL/test.xml.ref | ||
|---|---|---|
| 1 | 1 |
Put template: |
| 2 | 2 |
<VegBIEN> |
| 3 |
<location id="-1">
|
|
| 4 |
<parent_id><location><authorlocationcode>$1haPlotCode</authorlocationcode></location></parent_id>
|
|
| 5 |
<authorlocationcode>$Subplot</authorlocationcode>
|
|
| 6 |
<locationdetermination>
|
|
| 7 |
<latitude>
|
|
| 8 |
<_nullIf>
|
|
| 9 |
<null>0</null>
|
|
| 10 |
<type>float</type>
|
|
| 11 |
<value>$Latitude</value>
|
|
| 12 |
</_nullIf>
|
|
| 13 |
</latitude>
|
|
| 14 |
<longitude>
|
|
| 15 |
<_nullIf>
|
|
| 16 |
<null>0</null>
|
|
| 17 |
<type>float</type>
|
|
| 18 |
<value>$Longitude</value>
|
|
| 19 |
</_nullIf>
|
|
| 20 |
</longitude>
|
|
| 21 |
</locationdetermination>
|
|
| 22 |
<locationevent>
|
|
| 23 |
<method_id><method><name>$Method</name></method></method_id>
|
|
| 24 |
<project_id><project><projectname>$SiteName</projectname></project></project_id>
|
|
| 25 |
<obsenddate><_date><date><_dateRangeEnd><value>$ObservationDate</value></_dateRangeEnd></date></_date></obsenddate>
|
|
| 26 |
<obsstartdate><_date><date><_dateRangeStart><value>$ObservationDate</value></_dateRangeStart></date></_date></obsstartdate>
|
|
| 27 |
<taxonoccurrence>
|
|
| 28 |
<aggregateoccurrence>
|
|
| 29 |
<plantobservation>
|
|
| 30 |
<specimenreplicate><sourceaccessioncode>$ID</sourceaccessioncode></specimenreplicate>
|
|
| 31 |
<stemobservation>
|
|
| 32 |
<diameterbreastheight>$dbh</diameterbreastheight>
|
|
| 33 |
<stemtag>
|
|
| 34 |
<iscurrent>true</iscurrent>
|
|
| 35 |
<tag>$TreeNumber</tag>
|
|
| 36 |
</stemtag>
|
|
| 37 |
<xposition>$X_1haPlot</xposition>
|
|
| 38 |
<yposition>$Y_1haPlot</yposition>
|
|
| 39 |
</stemobservation>
|
|
| 40 |
</plantobservation>
|
|
| 41 |
</aggregateoccurrence>
|
|
| 42 |
<taxondetermination>
|
|
| 43 |
<plantconcept_id>
|
|
| 44 |
<plantconcept>
|
|
| 45 |
<plantname_id>
|
|
| 46 |
<_simplifyPath>
|
|
| 47 |
<next>parent_id</next>
|
|
| 48 |
<path>
|
|
| 49 |
<plantname>
|
|
| 50 |
<rank>binomial</rank>
|
|
| 51 |
<parent_id>
|
|
| 3 |
<_simplifyPath id="-1">
|
|
| 4 |
<next>parent_id</next>
|
|
| 5 |
<path>
|
|
| 6 |
<location>
|
|
| 7 |
<parent_id><location><authorlocationcode>$1haPlotCode</authorlocationcode></location></parent_id>
|
|
| 8 |
<authorlocationcode>$Subplot</authorlocationcode>
|
|
| 9 |
<locationdetermination>
|
|
| 10 |
<latitude>
|
|
| 11 |
<_nullIf>
|
|
| 12 |
<null>0</null>
|
|
| 13 |
<type>float</type>
|
|
| 14 |
<value>$Latitude</value>
|
|
| 15 |
</_nullIf>
|
|
| 16 |
</latitude>
|
|
| 17 |
<longitude>
|
|
| 18 |
<_nullIf>
|
|
| 19 |
<null>0</null>
|
|
| 20 |
<type>float</type>
|
|
| 21 |
<value>$Longitude</value>
|
|
| 22 |
</_nullIf>
|
|
| 23 |
</longitude>
|
|
| 24 |
</locationdetermination>
|
|
| 25 |
<locationevent>
|
|
| 26 |
<method_id><method><name>$Method</name></method></method_id>
|
|
| 27 |
<project_id><project><projectname>$SiteName</projectname></project></project_id>
|
|
| 28 |
<obsenddate><_date><date><_dateRangeEnd><value>$ObservationDate</value></_dateRangeEnd></date></_date></obsenddate>
|
|
| 29 |
<obsstartdate><_date><date><_dateRangeStart><value>$ObservationDate</value></_dateRangeStart></date></_date></obsstartdate>
|
|
| 30 |
<taxonoccurrence>
|
|
| 31 |
<aggregateoccurrence>
|
|
| 32 |
<plantobservation>
|
|
| 33 |
<specimenreplicate><sourceaccessioncode>$ID</sourceaccessioncode></specimenreplicate>
|
|
| 34 |
<stemobservation>
|
|
| 35 |
<diameterbreastheight>$dbh</diameterbreastheight>
|
|
| 36 |
<stemtag>
|
|
| 37 |
<iscurrent>true</iscurrent>
|
|
| 38 |
<tag>$TreeNumber</tag>
|
|
| 39 |
</stemtag>
|
|
| 40 |
<xposition>$X_1haPlot</xposition>
|
|
| 41 |
<yposition>$Y_1haPlot</yposition>
|
|
| 42 |
</stemobservation>
|
|
| 43 |
</plantobservation>
|
|
| 44 |
</aggregateoccurrence>
|
|
| 45 |
<taxondetermination>
|
|
| 46 |
<plantconcept_id>
|
|
| 47 |
<plantconcept>
|
|
| 48 |
<plantname_id>
|
|
| 49 |
<_simplifyPath>
|
|
| 50 |
<next>parent_id</next>
|
|
| 51 |
<path>
|
|
| 52 | 52 |
<plantname> |
| 53 |
<rank>authority</rank>
|
|
| 53 |
<rank>binomial</rank>
|
|
| 54 | 54 |
<parent_id> |
| 55 | 55 |
<plantname> |
| 56 |
<rank>subspecies</rank>
|
|
| 56 |
<rank>authority</rank>
|
|
| 57 | 57 |
<parent_id> |
| 58 | 58 |
<plantname> |
| 59 |
<rank>species</rank> |
|
| 60 |
<plantname>$SpecificEpithet</plantname> |
|
| 59 |
<rank>subspecies</rank> |
|
| 61 | 60 |
<parent_id> |
| 62 | 61 |
<plantname> |
| 63 |
<rank>genus</rank>
|
|
| 64 |
<plantname>$Genus</plantname>
|
|
| 62 |
<rank>species</rank>
|
|
| 63 |
<plantname>$SpecificEpithet</plantname>
|
|
| 65 | 64 |
<parent_id> |
| 66 | 65 |
<plantname> |
| 67 |
<rank>family</rank> |
|
| 68 |
<plantname>$Family</plantname> |
|
| 66 |
<rank>genus</rank> |
|
| 67 |
<plantname>$Genus</plantname> |
|
| 68 |
<parent_id> |
|
| 69 |
<plantname> |
|
| 70 |
<rank>family</rank> |
|
| 71 |
<plantname>$Family</plantname> |
|
| 72 |
</plantname> |
|
| 73 |
</parent_id> |
|
| 69 | 74 |
</plantname> |
| 70 | 75 |
</parent_id> |
| 71 | 76 |
</plantname> |
| ... | ... | |
| 75 | 80 |
</plantname> |
| 76 | 81 |
</parent_id> |
| 77 | 82 |
</plantname> |
| 78 |
</parent_id>
|
|
| 79 |
</plantname>
|
|
| 80 |
</path>
|
|
| 81 |
</_simplifyPath>
|
|
| 82 |
</plantname_id>
|
|
| 83 |
</plantconcept>
|
|
| 84 |
</plantconcept_id>
|
|
| 85 |
</taxondetermination>
|
|
| 86 |
<verbatimcollectorname>$Collectors</verbatimcollectorname>
|
|
| 87 |
</taxonoccurrence>
|
|
| 88 |
</locationevent>
|
|
| 89 |
</location>
|
|
| 83 |
</path>
|
|
| 84 |
</_simplifyPath>
|
|
| 85 |
</plantname_id>
|
|
| 86 |
</plantconcept>
|
|
| 87 |
</plantconcept_id>
|
|
| 88 |
</taxondetermination>
|
|
| 89 |
<verbatimcollectorname>$Collectors</verbatimcollectorname>
|
|
| 90 |
</taxonoccurrence>
|
|
| 91 |
</locationevent>
|
|
| 92 |
</location>
|
|
| 93 |
</path>
|
|
| 94 |
</_simplifyPath>
|
|
| 90 | 95 |
</VegBIEN> |
| 91 | 96 |
Inserted 23 new rows into database |
| inputs/TEAM/VT/VegBIEN.csv | ||
|---|---|---|
| 1 |
TEAM[Veg+],VegBIEN:,Comments |
|
| 1 |
TEAM[Veg+],VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
|
|
| 2 | 2 |
subplot,"/location/_if[@name=""if subplot""]/cond/_exists/_first/2", |
| 3 | 3 |
1haPlotCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1", |
| 4 | 4 |
ID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1", |
| inputs/TEAM/VT/test.xml.ref | ||
|---|---|---|
| 1 | 1 |
Put template: |
| 2 | 2 |
<VegBIEN> |
| 3 |
<location id="-1">
|
|
| 4 |
<parent_id><location><authorlocationcode>$1haPlotCode</authorlocationcode></location></parent_id>
|
|
| 5 |
<authorlocationcode>$Subplot</authorlocationcode>
|
|
| 6 |
<locationdetermination>
|
|
| 7 |
<latitude>
|
|
| 8 |
<_nullIf>
|
|
| 9 |
<null>0</null>
|
|
| 10 |
<type>float</type>
|
|
| 11 |
<value>$Latitude</value>
|
|
| 12 |
</_nullIf>
|
|
| 13 |
</latitude>
|
|
| 14 |
<longitude>
|
|
| 15 |
<_nullIf>
|
|
| 16 |
<null>0</null>
|
|
| 17 |
<type>float</type>
|
|
| 18 |
<value>$Longitude</value>
|
|
| 19 |
</_nullIf>
|
|
| 20 |
</longitude>
|
|
| 21 |
</locationdetermination>
|
|
| 22 |
<locationevent>
|
|
| 23 |
<method_id><method><name>$Method</name></method></method_id>
|
|
| 24 |
<project_id><project><projectname>$SiteName</projectname></project></project_id>
|
|
| 25 |
<obsenddate><_date><date><_dateRangeEnd><value>$ObservationDate</value></_dateRangeEnd></date></_date></obsenddate>
|
|
| 26 |
<obsstartdate><_date><date><_dateRangeStart><value>$ObservationDate</value></_dateRangeStart></date></_date></obsstartdate>
|
|
| 27 |
<taxonoccurrence>
|
|
| 28 |
<aggregateoccurrence>
|
|
| 29 |
<plantobservation>
|
|
| 30 |
<specimenreplicate><sourceaccessioncode>$ID</sourceaccessioncode></specimenreplicate>
|
|
| 31 |
<stemobservation>
|
|
| 32 |
<diameterbreastheight>$dbh</diameterbreastheight>
|
|
| 33 |
<stemtag>
|
|
| 34 |
<iscurrent>true</iscurrent>
|
|
| 35 |
<tag>$TreeNumber</tag>
|
|
| 36 |
</stemtag>
|
|
| 37 |
<xposition>$X_1haPlot</xposition>
|
|
| 38 |
<yposition>$Y_1haPlot</yposition>
|
|
| 39 |
</stemobservation>
|
|
| 40 |
</plantobservation>
|
|
| 41 |
</aggregateoccurrence>
|
|
| 42 |
<taxondetermination>
|
|
| 43 |
<plantconcept_id>
|
|
| 44 |
<plantconcept>
|
|
| 45 |
<plantname_id>
|
|
| 46 |
<_simplifyPath>
|
|
| 47 |
<next>parent_id</next>
|
|
| 48 |
<path>
|
|
| 49 |
<plantname>
|
|
| 50 |
<rank>binomial</rank>
|
|
| 51 |
<parent_id>
|
|
| 3 |
<_simplifyPath id="-1">
|
|
| 4 |
<next>parent_id</next>
|
|
| 5 |
<path>
|
|
| 6 |
<location>
|
|
| 7 |
<parent_id><location><authorlocationcode>$1haPlotCode</authorlocationcode></location></parent_id>
|
|
| 8 |
<authorlocationcode>$Subplot</authorlocationcode>
|
|
| 9 |
<locationdetermination>
|
|
| 10 |
<latitude>
|
|
| 11 |
<_nullIf>
|
|
| 12 |
<null>0</null>
|
|
| 13 |
<type>float</type>
|
|
| 14 |
<value>$Latitude</value>
|
|
| 15 |
</_nullIf>
|
|
| 16 |
</latitude>
|
|
| 17 |
<longitude>
|
|
| 18 |
<_nullIf>
|
|
| 19 |
<null>0</null>
|
|
| 20 |
<type>float</type>
|
|
| 21 |
<value>$Longitude</value>
|
|
| 22 |
</_nullIf>
|
|
| 23 |
</longitude>
|
|
| 24 |
</locationdetermination>
|
|
| 25 |
<locationevent>
|
|
| 26 |
<method_id><method><name>$Method</name></method></method_id>
|
|
| 27 |
<project_id><project><projectname>$SiteName</projectname></project></project_id>
|
|
| 28 |
<obsenddate><_date><date><_dateRangeEnd><value>$ObservationDate</value></_dateRangeEnd></date></_date></obsenddate>
|
|
| 29 |
<obsstartdate><_date><date><_dateRangeStart><value>$ObservationDate</value></_dateRangeStart></date></_date></obsstartdate>
|
|
| 30 |
<taxonoccurrence>
|
|
| 31 |
<aggregateoccurrence>
|
|
| 32 |
<plantobservation>
|
|
| 33 |
<specimenreplicate><sourceaccessioncode>$ID</sourceaccessioncode></specimenreplicate>
|
|
| 34 |
<stemobservation>
|
|
| 35 |
<diameterbreastheight>$dbh</diameterbreastheight>
|
|
| 36 |
<stemtag>
|
|
| 37 |
<iscurrent>true</iscurrent>
|
|
| 38 |
<tag>$TreeNumber</tag>
|
|
| 39 |
</stemtag>
|
|
| 40 |
<xposition>$X_1haPlot</xposition>
|
|
| 41 |
<yposition>$Y_1haPlot</yposition>
|
|
| 42 |
</stemobservation>
|
|
| 43 |
</plantobservation>
|
|
| 44 |
</aggregateoccurrence>
|
|
| 45 |
<taxondetermination>
|
|
| 46 |
<plantconcept_id>
|
|
| 47 |
<plantconcept>
|
|
| 48 |
<plantname_id>
|
|
| 49 |
<_simplifyPath>
|
|
| 50 |
<next>parent_id</next>
|
|
| 51 |
<path>
|
|
| 52 | 52 |
<plantname> |
| 53 |
<rank>authority</rank>
|
|
| 53 |
<rank>binomial</rank>
|
|
| 54 | 54 |
<parent_id> |
| 55 | 55 |
<plantname> |
| 56 |
<rank>subspecies</rank>
|
|
| 56 |
<rank>authority</rank>
|
|
| 57 | 57 |
<parent_id> |
| 58 | 58 |
<plantname> |
| 59 |
<rank>species</rank> |
|
| 60 |
<plantname>$SpecificEpithet</plantname> |
|
| 59 |
<rank>subspecies</rank> |
|
| 61 | 60 |
<parent_id> |
| 62 | 61 |
<plantname> |
| 63 |
<rank>genus</rank>
|
|
| 64 |
<plantname>$Genus</plantname>
|
|
| 62 |
<rank>species</rank>
|
|
| 63 |
<plantname>$SpecificEpithet</plantname>
|
|
| 65 | 64 |
<parent_id> |
| 66 | 65 |
<plantname> |
| 67 |
<rank>family</rank> |
|
| 68 |
<plantname>$Family</plantname> |
|
| 66 |
<rank>genus</rank> |
|
| 67 |
<plantname>$Genus</plantname> |
|
| 68 |
<parent_id> |
|
| 69 |
<plantname> |
|
| 70 |
<rank>family</rank> |
|
| 71 |
<plantname>$Family</plantname> |
|
| 72 |
</plantname> |
|
| 73 |
</parent_id> |
|
| 69 | 74 |
</plantname> |
| 70 | 75 |
</parent_id> |
| 71 | 76 |
</plantname> |
| ... | ... | |
| 75 | 80 |
</plantname> |
| 76 | 81 |
</parent_id> |
| 77 | 82 |
</plantname> |
| 78 |
</parent_id>
|
|
| 79 |
</plantname>
|
|
| 80 |
</path>
|
|
| 81 |
</_simplifyPath>
|
|
| 82 |
</plantname_id>
|
|
| 83 |
</plantconcept>
|
|
| 84 |
</plantconcept_id>
|
|
| 85 |
</taxondetermination>
|
|
| 86 |
<verbatimcollectorname>$Collectors</verbatimcollectorname>
|
|
| 87 |
</taxonoccurrence>
|
|
| 88 |
</locationevent>
|
|
| 89 |
</location>
|
|
| 83 |
</path>
|
|
| 84 |
</_simplifyPath>
|
|
| 85 |
</plantname_id>
|
|
| 86 |
</plantconcept>
|
|
| 87 |
</plantconcept_id>
|
|
| 88 |
</taxondetermination>
|
|
| 89 |
<verbatimcollectorname>$Collectors</verbatimcollectorname>
|
|
| 90 |
</taxonoccurrence>
|
|
| 91 |
</locationevent>
|
|
| 92 |
</location>
|
|
| 93 |
</path>
|
|
| 94 |
</_simplifyPath>
|
|
| 90 | 95 |
</VegBIEN> |
| 91 | 96 |
Inserted 23 new rows into database |
| inputs/NY/Specimen/VegBIEN.csv | ||
|---|---|---|
| 1 |
NY[Veg+],VegBIEN:,Comments |
|
| 1 |
NY[Veg+],VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
|
|
| 2 | 2 |
UniqueNYInternalRecordNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1", |
| 3 | 3 |
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1", |
| 4 | 4 |
collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1", |
| inputs/NY/Specimen/test.xml.ref | ||
|---|---|---|
| 1 | 1 |
Put template: |
| 2 | 2 |
<VegBIEN> |
| 3 |
<location id="-1"> |
|
| 4 |
<authorlocationcode> |
|
| 5 |
<_alt> |
|
| 6 |
<1>$UniqueNYInternalRecordNumber</1> |
|
| 7 |
<2> |
|
| 8 |
<_join> |
|
| 9 |
<1>$InstitutionCode</1> |
|
| 10 |
<2>$CollectionCode</2> |
|
| 11 |
<3>$CatalogNumber</3> |
|
| 12 |
</_join> |
|
| 13 |
</2> |
|
| 14 |
</_alt> |
|
| 15 |
</authorlocationcode> |
|
| 16 |
<elevation> |
|
| 17 |
<_avg> |
|
| 18 |
<max> |
|
| 19 |
<_units> |
|
| 20 |
<default>m</default> |
|
| 21 |
<to>m</to> |
|
| 22 |
<to></to> |
|
| 23 |
<value> |
|
| 24 |
<_replace> |
|
| 25 |
<\bca\.?></\bca\.?> |
|
| 26 |
<value>$MaximumElevation</value> |
|
| 27 |
</_replace> |
|
| 28 |
</value> |
|
| 29 |
</_units> |
|
| 30 |
</max> |
|
| 31 |
<min> |
|
| 32 |
<_units> |
|
| 33 |
<default>m</default> |
|
| 34 |
<to>m</to> |
|
| 35 |
<to></to> |
|
| 36 |
<value> |
|
| 37 |
<_rangeStart> |
|
| 3 |
<_simplifyPath id="-1"> |
|
| 4 |
<next>parent_id</next> |
|
| 5 |
<path> |
|
| 6 |
<location> |
|
| 7 |
<authorlocationcode> |
|
| 8 |
<_alt> |
|
| 9 |
<1>$UniqueNYInternalRecordNumber</1> |
|
| 10 |
<2> |
|
| 11 |
<_join> |
|
| 12 |
<1>$InstitutionCode</1> |
|
| 13 |
<2>$CollectionCode</2> |
|
| 14 |
<3>$CatalogNumber</3> |
|
| 15 |
</_join> |
|
| 16 |
</2> |
|
| 17 |
</_alt> |
|
| 18 |
</authorlocationcode> |
|
| 19 |
<elevation> |
|
| 20 |
<_avg> |
|
| 21 |
<max> |
|
| 22 |
<_units> |
|
| 23 |
<default>m</default> |
|
| 24 |
<to>m</to> |
|
| 25 |
<to></to> |
|
| 38 | 26 |
<value> |
| 39 | 27 |
<_replace> |
| 40 | 28 |
<\bca\.?></\bca\.?> |
| 41 |
<value> |
|
| 42 |
<_nullIf> |
|
| 43 |
<null>.</null> |
|
| 44 |
<value>$MinimumElevation</value> |
|
| 45 |
</_nullIf> |
|
| 46 |
</value> |
|
| 29 |
<value>$MaximumElevation</value> |
|
| 47 | 30 |
</_replace> |
| 48 | 31 |
</value> |
| 49 |
</_rangeStart> |
|
| 50 |
</value> |
|
| 51 |
</_units> |
|
| 52 |
</min> |
|
| 53 |
</_avg> |
|
| 54 |
</elevation> |
|
| 55 |
<elevationrange> |
|
| 56 |
<_range> |
|
| 57 |
<from> |
|
| 58 |
<_units> |
|
| 59 |
<default>m</default> |
|
| 60 |
<to>m</to> |
|
| 61 |
<to></to> |
|
| 62 |
<value> |
|
| 63 |
<_rangeStart> |
|
| 32 |
</_units> |
|
| 33 |
</max> |
|
| 34 |
<min> |
|
| 35 |
<_units> |
|
| 36 |
<default>m</default> |
|
| 37 |
<to>m</to> |
|
| 38 |
<to></to> |
|
| 64 | 39 |
<value> |
| 65 |
<_replace> |
|
| 66 |
<\bca\.?></\bca\.?> |
|
| 40 |
<_rangeStart> |
|
| 67 | 41 |
<value> |
| 68 |
<_nullIf> |
|
| 69 |
<null>.</null> |
|
| 70 |
<value>$MinimumElevation</value> |
|
| 71 |
</_nullIf> |
|
| 42 |
<_replace> |
|
| 43 |
<\bca\.?></\bca\.?> |
|
| 44 |
<value> |
|
| 45 |
<_nullIf> |
|
| 46 |
<null>.</null> |
|
| 47 |
<value>$MinimumElevation</value> |
|
| 48 |
</_nullIf> |
|
| 49 |
</value> |
|
| 50 |
</_replace> |
|
| 72 | 51 |
</value> |
| 73 |
</_replace>
|
|
| 52 |
</_rangeStart>
|
|
| 74 | 53 |
</value> |
| 75 |
</_rangeStart> |
|
| 76 |
</value> |
|
| 77 |
</_units> |
|
| 78 |
</from> |
|
| 79 |
<to> |
|
| 80 |
<_units> |
|
| 81 |
<default>m</default> |
|
| 82 |
<to>m</to> |
|
| 83 |
<to></to> |
|
| 84 |
<value> |
|
| 85 |
<_alt> |
|
| 86 |
<1> |
|
| 87 |
<_replace> |
|
| 88 |
<\bca\.?></\bca\.?> |
|
| 89 |
<value>$MaximumElevation</value> |
|
| 90 |
</_replace> |
|
| 91 |
</1> |
|
| 92 |
<2> |
|
| 93 |
<_rangeEnd> |
|
| 54 |
</_units> |
|
| 55 |
</min> |
|
| 56 |
</_avg> |
|
| 57 |
</elevation> |
|
| 58 |
<elevationrange> |
|
| 59 |
<_range> |
|
| 60 |
<from> |
|
| 61 |
<_units> |
|
| 62 |
<default>m</default> |
|
| 63 |
<to>m</to> |
|
| 64 |
<to></to> |
|
| 65 |
<value> |
|
| 66 |
<_rangeStart> |
|
| 94 | 67 |
<value> |
| 95 | 68 |
<_replace> |
| 96 | 69 |
<\bca\.?></\bca\.?> |
| ... | ... | |
| 102 | 75 |
</value> |
| 103 | 76 |
</_replace> |
| 104 | 77 |
</value> |
| 105 |
</_rangeEnd> |
|
| 106 |
</2> |
|
| 107 |
</_alt> |
|
| 108 |
</value> |
|
| 109 |
</_units> |
|
| 110 |
</to> |
|
| 111 |
</_range> |
|
| 112 |
</elevationrange> |
|
| 113 |
<locationdetermination> |
|
| 114 |
<coordsaccuracy><_noCV><value>$CoordinatePrecision</value></_noCV></coordsaccuracy> |
|
| 115 |
<footprintgeometry_dwc>$BoundingBox</footprintgeometry_dwc> |
|
| 116 |
<latitude> |
|
| 117 |
<_nullIf> |
|
| 118 |
<null>0</null> |
|
| 119 |
<type>float</type> |
|
| 120 |
<value>$Latitude</value> |
|
| 121 |
</_nullIf> |
|
| 122 |
</latitude> |
|
| 123 |
<longitude> |
|
| 124 |
<_nullIf> |
|
| 125 |
<null>0</null> |
|
| 126 |
<type>float</type> |
|
| 127 |
<value>$Longitude</value> |
|
| 128 |
</_nullIf> |
|
| 129 |
</longitude> |
|
| 130 |
<namedplace_id> |
|
| 131 |
<_simplifyPath> |
|
| 132 |
<next>parent_id</next> |
|
| 133 |
<path> |
|
| 134 |
<namedplace> |
|
| 135 |
<rank>county</rank> |
|
| 136 |
<placename>$County</placename> |
|
| 137 |
<parent_id> |
|
| 78 |
</_rangeStart> |
|
| 79 |
</value> |
|
| 80 |
</_units> |
|
| 81 |
</from> |
|
| 82 |
<to> |
|
| 83 |
<_units> |
|
| 84 |
<default>m</default> |
|
| 85 |
<to>m</to> |
|
| 86 |
<to></to> |
|
| 87 |
<value> |
|
| 88 |
<_alt> |
|
| 89 |
<1> |
|
| 90 |
<_replace> |
|
| 91 |
<\bca\.?></\bca\.?> |
|
| 92 |
<value>$MaximumElevation</value> |
|
| 93 |
</_replace> |
|
| 94 |
</1> |
|
| 95 |
<2> |
|
| 96 |
<_rangeEnd> |
|
| 97 |
<value> |
|
| 98 |
<_replace> |
|
| 99 |
<\bca\.?></\bca\.?> |
|
| 100 |
<value> |
|
| 101 |
<_nullIf> |
|
| 102 |
<null>.</null> |
|
| 103 |
<value>$MinimumElevation</value> |
|
| 104 |
</_nullIf> |
|
| 105 |
</value> |
|
| 106 |
</_replace> |
|
| 107 |
</value> |
|
| 108 |
</_rangeEnd> |
|
| 109 |
</2> |
|
| 110 |
</_alt> |
|
| 111 |
</value> |
|
| 112 |
</_units> |
|
| 113 |
</to> |
|
| 114 |
</_range> |
|
| 115 |
</elevationrange> |
|
| 116 |
<locationdetermination> |
|
| 117 |
<coordsaccuracy><_noCV><value>$CoordinatePrecision</value></_noCV></coordsaccuracy> |
|
| 118 |
<footprintgeometry_dwc>$BoundingBox</footprintgeometry_dwc> |
|
| 119 |
<latitude> |
|
| 120 |
<_nullIf> |
|
| 121 |
<null>0</null> |
|
| 122 |
<type>float</type> |
|
| 123 |
<value>$Latitude</value> |
|
| 124 |
</_nullIf> |
|
| 125 |
</latitude> |
|
| 126 |
<longitude> |
|
| 127 |
<_nullIf> |
|
| 128 |
<null>0</null> |
|
| 129 |
<type>float</type> |
|
| 130 |
<value>$Longitude</value> |
|
| 131 |
</_nullIf> |
|
| 132 |
</longitude> |
|
| 133 |
<namedplace_id> |
|
| 134 |
<_simplifyPath> |
|
| 135 |
<next>parent_id</next> |
|
| 136 |
<path> |
|
| 138 | 137 |
<namedplace> |
| 139 |
<rank>stateProvince</rank>
|
|
| 140 |
<placename>$StateProvince</placename>
|
|
| 138 |
<rank>county</rank>
|
|
| 139 |
<placename>$County</placename>
|
|
| 141 | 140 |
<parent_id> |
| 142 | 141 |
<namedplace> |
| 143 |
<rank>country</rank>
|
|
| 144 |
<placename>$Country</placename>
|
|
| 142 |
<rank>stateProvince</rank>
|
|
| 143 |
<placename>$StateProvince</placename>
|
|
| 145 | 144 |
<parent_id> |
| 146 | 145 |
<namedplace> |
| 147 |
<rank>continent</rank> |
|
| 148 |
<placename>$ContinentOcean</placename> |
|
| 146 |
<rank>country</rank> |
|
| 147 |
<placename>$Country</placename> |
|
| 148 |
<parent_id> |
|
| 149 |
<namedplace> |
|
| 150 |
<rank>continent</rank> |
|
| 151 |
<placename>$ContinentOcean</placename> |
|
| 152 |
</namedplace> |
|
| 153 |
</parent_id> |
|
| 149 | 154 |
</namedplace> |
| 150 | 155 |
</parent_id> |
| 151 | 156 |
</namedplace> |
| 152 | 157 |
</parent_id> |
| 153 | 158 |
</namedplace> |
| 154 |
</parent_id> |
|
| 155 |
</namedplace> |
|
| 156 |
</path> |
|
| 157 |
</_simplifyPath> |
|
| 158 |
</namedplace_id> |
|
| 159 |
</locationdetermination> |
|
| 160 |
<locationevent> |
|
| 161 |
<taxonoccurrence> |
|
| 162 |
<aggregateoccurrence> |
|
| 163 |
<collectiondate> |
|
| 164 |
<_date> |
|
| 165 |
<day> |
|
| 166 |
<_nullIf> |
|
| 167 |
<null>0</null> |
|
| 168 |
<type>float</type> |
|
| 169 |
<value>$DayCollected</value> |
|
| 170 |
</_nullIf> |
|
| 171 |
</day> |
|
| 172 |
<month> |
|
| 173 |
<_nullIf> |
|
| 174 |
<null>0</null> |
|
| 175 |
<type>float</type> |
|
| 176 |
<value>$MonthCollected</value> |
|
| 177 |
</_nullIf> |
|
| 178 |
</month> |
|
| 179 |
<year> |
|
| 180 |
<_nullIf> |
|
| 181 |
<null>0</null> |
|
| 182 |
<type>float</type> |
|
| 183 |
<value>$YearCollected</value> |
|
| 184 |
</_nullIf> |
|
| 185 |
</year> |
|
| 186 |
</_date> |
|
| 187 |
</collectiondate> |
|
| 188 |
<count>$IndividualCount</count> |
|
| 189 |
<notes> |
|
| 190 |
<_merge> |
|
| 191 |
<1>$Notes</1> |
|
| 192 |
<2> |
|
| 193 |
<_label> |
|
| 194 |
<label>plant fungus</label> |
|
| 195 |
<value>$PlantFungusDescription</value> |
|
| 196 |
</_label> |
|
| 197 |
</2> |
|
| 198 |
</_merge> |
|
| 199 |
</notes> |
|
| 200 |
<plantobservation> |
|
| 201 |
<collectionnumber>$FieldNumber</collectionnumber> |
|
| 202 |
<definedvalue fkey="tablerecord_id"> |
|
| 203 |
<userdefined_id> |
|
| 204 |
<userdefined> |
|
| 205 |
<tablename>plantobservation</tablename> |
|
| 206 |
<userdefinedname>sex</userdefinedname> |
|
| 207 |
</userdefined> |
|
| 208 |
</userdefined_id> |
|
| 209 |
<definedvalue>$Sex</definedvalue> |
|
| 210 |
</definedvalue> |
|
| 211 |
<specimenreplicate> |
|
| 212 |
<catalognumber_dwc>$CatalogNumber</catalognumber_dwc> |
|
| 213 |
<collectioncode_dwc>$CollectionCode</collectioncode_dwc> |
|
| 214 |
<institution_id><party><organizationname>$InstitutionCode</organizationname></party></institution_id> |
|
| 215 |
<sourceaccessioncode>$UniqueNYInternalRecordNumber</sourceaccessioncode> |
|
| 216 |
</specimenreplicate> |
|
| 217 |
</plantobservation> |
|
| 218 |
</aggregateoccurrence> |
|
| 219 |
<authortaxoncode> |
|
| 220 |
<_alt> |
|
| 221 |
<1>$FieldNumber</1> |
|
| 222 |
<2>$ScientificName</2> |
|
| 223 |
</_alt> |
|
| 224 |
</authortaxoncode> |
|
| 225 |
<taxondetermination> |
|
| 226 |
<party_id> |
|
| 227 |
<party> |
|
| 228 |
<givenname><_namePart><first>$IdentifiedBy</first></_namePart></givenname> |
|
| 229 |
<middlename><_namePart><middle>$IdentifiedBy</middle></_namePart></middlename> |
|
| 230 |
<surname><_namePart><last>$IdentifiedBy</last></_namePart></surname> |
|
| 231 |
</party> |
|
| 232 |
</party_id> |
|
| 233 |
<plantconcept_id> |
|
| 234 |
<plantconcept> |
|
| 235 |
<plantname_id> |
|
| 236 |
<_simplifyPath> |
|
| 237 |
<next>parent_id</next> |
|
| 238 |
<path> |
|
| 239 |
<plantname> |
|
| 240 |
<rank>binomial</rank> |
|
| 241 |
<plantname>$ScientificName</plantname> |
|
| 242 |
<parent_id> |
|
| 159 |
</path> |
|
| 160 |
</_simplifyPath> |
|
| 161 |
</namedplace_id> |
|
| 162 |
</locationdetermination> |
|
| 163 |
<locationevent> |
|
| 164 |
<taxonoccurrence> |
|
| 165 |
<aggregateoccurrence> |
|
| 166 |
<collectiondate> |
|
| 167 |
<_date> |
|
| 168 |
<day> |
|
| 169 |
<_nullIf> |
|
| 170 |
<null>0</null> |
|
| 171 |
<type>float</type> |
|
| 172 |
<value>$DayCollected</value> |
|
| 173 |
</_nullIf> |
|
| 174 |
</day> |
|
| 175 |
<month> |
|
| 176 |
<_nullIf> |
|
| 177 |
<null>0</null> |
|
| 178 |
<type>float</type> |
|
| 179 |
<value>$MonthCollected</value> |
|
| 180 |
</_nullIf> |
|
| 181 |
</month> |
|
| 182 |
<year> |
|
| 183 |
<_nullIf> |
|
| 184 |
<null>0</null> |
|
| 185 |
<type>float</type> |
|
| 186 |
<value>$YearCollected</value> |
|
| 187 |
</_nullIf> |
|
| 188 |
</year> |
|
| 189 |
</_date> |
|
| 190 |
</collectiondate> |
|
| 191 |
<count>$IndividualCount</count> |
|
| 192 |
<notes> |
|
| 193 |
<_merge> |
|
| 194 |
<1>$Notes</1> |
|
| 195 |
<2> |
|
| 196 |
<_label> |
|
| 197 |
<label>plant fungus</label> |
|
| 198 |
<value>$PlantFungusDescription</value> |
|
| 199 |
</_label> |
|
| 200 |
</2> |
|
| 201 |
</_merge> |
|
| 202 |
</notes> |
|
| 203 |
<plantobservation> |
|
| 204 |
<collectionnumber>$FieldNumber</collectionnumber> |
|
| 205 |
<definedvalue fkey="tablerecord_id"> |
|
| 206 |
<userdefined_id> |
|
| 207 |
<userdefined> |
|
| 208 |
<tablename>plantobservation</tablename> |
|
| 209 |
<userdefinedname>sex</userdefinedname> |
|
| 210 |
</userdefined> |
|
| 211 |
</userdefined_id> |
|
| 212 |
<definedvalue>$Sex</definedvalue> |
|
| 213 |
</definedvalue> |
|
| 214 |
<specimenreplicate> |
|
| 215 |
<catalognumber_dwc>$CatalogNumber</catalognumber_dwc> |
|
| 216 |
<collectioncode_dwc>$CollectionCode</collectioncode_dwc> |
|
| 217 |
<institution_id><party><organizationname>$InstitutionCode</organizationname></party></institution_id> |
|
| 218 |
<sourceaccessioncode>$UniqueNYInternalRecordNumber</sourceaccessioncode> |
|
| 219 |
</specimenreplicate> |
|
| 220 |
</plantobservation> |
|
| 221 |
</aggregateoccurrence> |
|
| 222 |
<authortaxoncode> |
|
| 223 |
<_alt> |
|
| 224 |
<1>$FieldNumber</1> |
|
| 225 |
<2>$ScientificName</2> |
|
| 226 |
</_alt> |
|
| 227 |
</authortaxoncode> |
|
| 228 |
<taxondetermination> |
|
| 229 |
<party_id> |
|
| 230 |
<party> |
|
| 231 |
<givenname><_namePart><first>$IdentifiedBy</first></_namePart></givenname> |
|
| 232 |
<middlename><_namePart><middle>$IdentifiedBy</middle></_namePart></middlename> |
|
| 233 |
<surname><_namePart><last>$IdentifiedBy</last></_namePart></surname> |
|
| 234 |
</party> |
|
| 235 |
</party_id> |
|
| 236 |
<plantconcept_id> |
|
| 237 |
<plantconcept> |
|
| 238 |
<plantname_id> |
|
| 239 |
<_simplifyPath> |
|
| 240 |
<next>parent_id</next> |
|
| 241 |
<path> |
|
| 243 | 242 |
<plantname> |
| 244 |
<rank>authority</rank>
|
|
| 245 |
<plantname>$ScientificNameAuthor</plantname>
|
|
| 243 |
<rank>binomial</rank>
|
|
| 244 |
<plantname>$ScientificName</plantname> |
|
| 246 | 245 |
<parent_id> |
| 247 | 246 |
<plantname> |
| 248 |
<rank>subspecies</rank>
|
|
| 249 |
<plantname>$Subspecies</plantname>
|
|
| 247 |
<rank>authority</rank>
|
|
| 248 |
<plantname>$ScientificNameAuthor</plantname>
|
|
| 250 | 249 |
<parent_id> |
| 251 | 250 |
<plantname> |
| 252 |
<rank>species</rank> |
|
| 253 |
<plantname>$Species</plantname> |
|
| 251 |
<rank>subspecies</rank>
|
|
| 252 |
<plantname>$Subspecies</plantname>
|
|
| 254 | 253 |
<parent_id> |
| 255 | 254 |
<plantname> |
| 256 |
<rank>genus</rank>
|
|
| 257 |
<plantname>$Genus</plantname>
|
|
| 255 |
<rank>species</rank>
|
|
| 256 |
<plantname>$Species</plantname>
|
|
| 258 | 257 |
<parent_id> |
| 259 | 258 |
<plantname> |
| 260 |
<rank>family</rank>
|
|
| 261 |
<plantname>$Family</plantname>
|
|
| 259 |
<rank>genus</rank>
|
|
| 260 |
<plantname>$Genus</plantname>
|
|
| 262 | 261 |
<parent_id> |
| 263 | 262 |
<plantname> |
| 264 |
<rank>order</rank>
|
|
| 265 |
<plantname>$Order</plantname>
|
|
| 263 |
<rank>family</rank>
|
|
| 264 |
<plantname>$Family</plantname>
|
|
| 266 | 265 |
<parent_id> |
| 267 | 266 |
<plantname> |
| 268 |
<rank>class</rank>
|
|
| 269 |
<plantname>$Class</plantname>
|
|
| 267 |
<rank>order</rank>
|
|
| 268 |
<plantname>$Order</plantname>
|
|
| 270 | 269 |
<parent_id> |
| 271 | 270 |
<plantname> |
| 272 |
<rank>subkingdom</rank>
|
|
| 273 |
<plantname>$Phylum</plantname>
|
|
| 271 |
<rank>class</rank>
|
|
| 272 |
<plantname>$Class</plantname>
|
|
| 274 | 273 |
<parent_id> |
| 275 | 274 |
<plantname> |
| 276 |
<rank>kingdom</rank> |
|
| 277 |
<plantname>$Kingdom</plantname> |
|
| 275 |
<rank>subkingdom</rank> |
|
| 276 |
<plantname>$Phylum</plantname> |
|
| 277 |
<parent_id> |
|
| 278 |
<plantname> |
|
| 279 |
<rank>kingdom</rank> |
|
| 280 |
<plantname>$Kingdom</plantname> |
|
| 281 |
</plantname> |
|
| 282 |
</parent_id> |
|
| 278 | 283 |
</plantname> |
| 279 | 284 |
</parent_id> |
| 280 | 285 |
</plantname> |
| ... | ... | |
| 292 | 297 |
</plantname> |
| 293 | 298 |
</parent_id> |
| 294 | 299 |
</plantname> |
| 295 |
</parent_id> |
|
| 296 |
</plantname> |
|
| 297 |
</path> |
|
| 298 |
</_simplifyPath> |
|
| 299 |
</plantname_id> |
|
| 300 |
</plantconcept> |
|
| 301 |
</plantconcept_id> |
|
| 302 |
<determinationdate> |
|
| 303 |
<_date> |
|
| 304 |
<day> |
|
| 305 |
<_nullIf> |
|
| 306 |
<null>0</null> |
|
| 307 |
<type>float</type> |
|
| 308 |
<value>$DayIdentified</value> |
|
| 309 |
</_nullIf> |
|
| 310 |
</day> |
|
| 311 |
<month> |
|
| 312 |
<_nullIf> |
|
| 313 |
<null>0</null> |
|
| 314 |
<type>float</type> |
|
| 315 |
<value>$MonthIdentified</value> |
|
| 316 |
</_nullIf> |
|
| 317 |
</month> |
|
| 318 |
<year> |
|
| 319 |
<_nullIf> |
|
| 320 |
<null>0</null> |
|
| 321 |
<type>float</type> |
|
| 322 |
<value>$YearIdentified</value> |
|
| 323 |
</_nullIf> |
|
| 324 |
</year> |
|
| 325 |
</_date> |
|
| 326 |
</determinationdate> |
|
| 327 |
</taxondetermination> |
|
| 328 |
<verbatimcollectorname>$Collector</verbatimcollectorname> |
|
| 329 |
</taxonoccurrence> |
|
| 330 |
<waterdepth> |
|
| 331 |
<_avg> |
|
| 332 |
<max> |
|
| 333 |
<_units> |
|
| 334 |
<default>m</default> |
|
| 335 |
<to>m</to> |
|
| 336 |
<to></to> |
|
| 337 |
<value> |
|
| 338 |
<_replace> |
|
| 339 |
<\bca\.?></\bca\.?> |
|
| 340 |
<value>$MaximumDepth</value> |
|
| 341 |
</_replace> |
|
| 342 |
</value> |
|
| 343 |
</_units> |
|
| 344 |
</max> |
|
| 345 |
<min> |
|
| 346 |
<_units> |
|
| 347 |
<default>m</default> |
|
| 348 |
<to>m</to> |
|
| 349 |
<to></to> |
|
| 350 |
<value> |
|
| 351 |
<_replace> |
|
| 352 |
<\bca\.?></\bca\.?> |
|
| 353 |
<value>$MinimumDepth</value> |
|
| 354 |
</_replace> |
|
| 355 |
</value> |
|
| 356 |
</_units> |
|
| 357 |
</min> |
|
| 358 |
</_avg> |
|
| 359 |
</waterdepth> |
|
| 360 |
</locationevent> |
|
| 361 |
<locationnarrative> |
|
| 362 |
<_merge> |
|
| 363 |
<1> |
|
| 300 |
</path> |
|
| 301 |
</_simplifyPath> |
|
| 302 |
</plantname_id> |
|
| 303 |
</plantconcept> |
|
| 304 |
</plantconcept_id> |
|
| 305 |
<determinationdate> |
|
| 306 |
<_date> |
|
| 307 |
<day> |
|
| 308 |
<_nullIf> |
|
| 309 |
<null>0</null> |
|
| 310 |
<type>float</type> |
|
| 311 |
<value>$DayIdentified</value> |
|
| 312 |
</_nullIf> |
|
| 313 |
</day> |
|
| 314 |
<month> |
|
| 315 |
<_nullIf> |
|
| 316 |
<null>0</null> |
|
| 317 |
<type>float</type> |
|
| 318 |
<value>$MonthIdentified</value> |
|
| 319 |
</_nullIf> |
|
| 320 |
</month> |
|
| 321 |
<year> |
|
| 322 |
<_nullIf> |
|
| 323 |
<null>0</null> |
|
| 324 |
<type>float</type> |
|
| 325 |
<value>$YearIdentified</value> |
|
| 326 |
</_nullIf> |
|
| 327 |
</year> |
|
| 328 |
</_date> |
|
| 329 |
</determinationdate> |
|
| 330 |
</taxondetermination> |
|
| 331 |
<verbatimcollectorname>$Collector</verbatimcollectorname> |
|
| 332 |
</taxonoccurrence> |
|
| 333 |
<waterdepth> |
|
| 334 |
<_avg> |
|
| 335 |
<max> |
|
| 336 |
<_units> |
|
| 337 |
<default>m</default> |
|
| 338 |
<to>m</to> |
|
| 339 |
<to></to> |
|
| 340 |
<value> |
|
| 341 |
<_replace> |
|
| 342 |
<\bca\.?></\bca\.?> |
|
| 343 |
<value>$MaximumDepth</value> |
|
| 344 |
</_replace> |
|
| 345 |
</value> |
|
| 346 |
</_units> |
|
| 347 |
</max> |
|
| 348 |
<min> |
|
| 349 |
<_units> |
|
| 350 |
<default>m</default> |
|
| 351 |
<to>m</to> |
|
| 352 |
<to></to> |
|
| 353 |
<value> |
|
| 354 |
<_replace> |
|
| 355 |
<\bca\.?></\bca\.?> |
|
| 356 |
<value>$MinimumDepth</value> |
|
| 357 |
</_replace> |
|
| 358 |
</value> |
|
| 359 |
</_units> |
|
| 360 |
</min> |
|
| 361 |
</_avg> |
|
| 362 |
</waterdepth> |
|
| 363 |
</locationevent> |
|
| 364 |
<locationnarrative> |
|
| 364 | 365 |
<_merge> |
| 365 |
<1>$Locality</1> |
|
| 366 |
<2> |
|
| 367 |
<_label> |
|
| 368 |
<label>substrate</label> |
|
| 369 |
<value>$Substrate</value> |
|
| 370 |
</_label> |
|
| 371 |
</2> |
|
| 366 |
<1> |
|
| 367 |
<_merge> |
|
| 368 |
<1>$Locality</1> |
|
| 369 |
<2> |
|
| 370 |
<_label> |
|
| 371 |
<label>substrate</label> |
|
| 372 |
<value>$Substrate</value> |
|
| 373 |
</_label> |
|
| 374 |
</2> |
|
| 375 |
<3> |
|
| 376 |
<_label> |
|
| 377 |
<label>vegetation</label> |
|
| 378 |
<value>$Vegetation</value> |
|
| 379 |
</_label> |
|
| 380 |
</3> |
|
| 381 |
</_merge> |
|
| 382 |
</1> |
|
| 372 | 383 |
<3> |
| 373 | 384 |
<_label> |
| 374 |
<label>vegetation</label>
|
|
| 375 |
<value>$Vegetation</value>
|
|
| 385 |
<label>habitat</label>
|
|
| 386 |
<value>$Habitat</value>
|
|
| 376 | 387 |
</_label> |
| 377 | 388 |
</3> |
| 378 | 389 |
</_merge> |
| 379 |
</1> |
|
| 380 |
<3> |
|
| 381 |
<_label> |
|
| 382 |
<label>habitat</label> |
|
| 383 |
<value>$Habitat</value> |
|
| 384 |
</_label> |
|
| 385 |
</3> |
|
| 386 |
</_merge> |
|
| 387 |
</locationnarrative> |
|
| 388 |
</location> |
|
| 390 |
</locationnarrative> |
|
| 391 |
</location> |
|
| 392 |
</path> |
|
| 393 |
</_simplifyPath> |
|
| 389 | 394 |
</VegBIEN> |
| 390 | 395 |
Inserted 39 new rows into database |
| inputs/Madidi/Organism/VegBIEN.csv | ||
|---|---|---|
| 1 |
Madidi[Veg+],VegBIEN:,Comments |
|
| 1 |
Madidi[Veg+],VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
|
|
| 2 | 2 |
Number of subplot,"/location/_if[@name=""if subplot""]/cond/_exists/_first/2", |
| 3 | 3 |
Inventory name,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1", |
| 4 | 4 |
Inventory code,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists", |
| inputs/Madidi/Organism/test.xml.ref | ||
|---|---|---|
| 1 | 1 |
Put template: |
| 2 | 2 |
<VegBIEN> |
| 3 |
<location id="-1"> |
|
| 4 |
<parent_id> |
|
| 3 |
<_simplifyPath id="-1"> |
|
| 4 |
<next>parent_id</next> |
|
| 5 |
<path> |
|
| 5 | 6 |
<location> |
| 6 |
<authorlocationcode>$Inventory name</authorlocationcode> |
|
| 7 |
<sourceaccessioncode>$Inventory code</sourceaccessioncode> |
|
| 8 |
</location> |
|
| 9 |
</parent_id> |
|
| 10 |
<authorlocationcode>$Number of subplot</authorlocationcode> |
|
| 11 |
<locationevent> |
|
| 12 |
<project_id><project><projectname>$Expedition</projectname></project></project_id> |
|
| 13 |
<taxonoccurrence> |
|
| 14 |
<aggregateoccurrence> |
|
| 15 |
<notes>$Observations</notes> |
|
| 16 |
<plantobservation> |
|
| 17 |
<collectionnumber>$Tree number</collectionnumber> |
|
| 18 |
<specimenreplicate><catalognumber_dwc>$Specimen</catalognumber_dwc></specimenreplicate> |
|
| 19 |
<stemobservation> |
|
| 20 |
<authorstemcode>$Trunk</authorstemcode> |
|
| 21 |
<definedvalue fkey="tablerecord_id"> |
|
| 22 |
<userdefined_id> |
|
| 23 |
<userdefined> |
|
| 24 |
<tablename>stemobservation</tablename> |
|
| 25 |
<userdefinedname>lianaInfestation</userdefinedname> |
|
| 26 |
</userdefined> |
|
| 27 |
</userdefined_id> |
|
| 28 |
<definedvalue>$Liana presence</definedvalue> |
|
| 29 |
</definedvalue> |
|
| 30 |
<diameterbreastheight>$Diameter</diameterbreastheight> |
|
| 31 |
<height>$Total height</height> |
|
| 32 |
<stemtag> |
|
| 33 |
<iscurrent>true</iscurrent> |
|
| 34 |
<tag>$Tag number</tag> |
|
| 35 |
</stemtag> |
|
| 36 |
<xposition>$Subplot X</xposition> |
|
| 37 |
<yposition>$Subplot Y</yposition> |
|
| 38 |
</stemobservation> |
|
| 39 |
</plantobservation> |
|
| 40 |
</aggregateoccurrence> |
|
| 41 |
<authortaxoncode> |
|
| 42 |
<_alt> |
|
| 43 |
<1>$Tree number</1> |
|
| 44 |
<2>$Specie+autor</2> |
|
| 45 |
</_alt> |
|
| 46 |
</authortaxoncode> |
|
| 47 |
<growthform> |
|
| 48 |
<_map> |
|
| 49 |
<T>tree</T> |
|
| 50 |
<Arbol>tree</Arbol> |
|
| 51 |
<palm>tree</palm> |
|
| 52 |
<H>hemiepiphyte</H> |
|
| 53 |
<Hemiepífito>hemiepiphyte</Hemiepífito> |
|
| 54 |
<L>liana</L> |
|
| 55 |
<l>liana</l> |
|
| 56 |
<L?>liana</L?> |
|
| 57 |
<Liana>liana</Liana> |
|
| 58 |
<E>epiphyte</E> |
|
| 59 |
<S>shrub</S> |
|
| 60 |
<Hb>herb</Hb> |
|
| 61 |
<vine-herbaceous>vine</vine-herbaceous> |
|
| 62 |
<graminoid>grass</graminoid> |
|
| 63 |
<rosette>forb</rosette> |
|
| 64 |
<*>*</*> |
|
| 65 |
<value>$Habit</value> |
|
| 66 |
</_map> |
|
| 67 |
</growthform> |
|
| 68 |
<taxondetermination> |
|
| 69 |
<party_id> |
|
| 70 |
<party> |
|
| 71 |
<givenname><_namePart><first>$Determined by</first></_namePart></givenname> |
|
| 72 |
<middlename><_namePart><middle>$Determined by</middle></_namePart></middlename> |
|
| 73 |
<surname><_namePart><last>$Determined by</last></_namePart></surname> |
|
| 74 |
</party> |
|
| 75 |
</party_id> |
|
| 76 |
<plantconcept_id> |
|
| 77 |
<plantconcept> |
|
| 78 |
<plantname_id> |
|
| 79 |
<_simplifyPath> |
|
| 80 |
<next>parent_id</next> |
|
| 81 |
<path> |
|
| 82 |
<plantname> |
|
| 83 |
<rank>binomial</rank> |
|
| 84 |
<plantname>$Specie+autor</plantname> |
|
| 85 |
<parent_id> |
|
| 7 |
<parent_id> |
|
| 8 |
<location> |
|
| 9 |
<authorlocationcode>$Inventory name</authorlocationcode> |
|
| 10 |
<sourceaccessioncode>$Inventory code</sourceaccessioncode> |
|
| 11 |
</location> |
|
| 12 |
</parent_id> |
|
| 13 |
<authorlocationcode>$Number of subplot</authorlocationcode> |
|
| 14 |
<locationevent> |
|
| 15 |
<project_id><project><projectname>$Expedition</projectname></project></project_id> |
|
| 16 |
<taxonoccurrence> |
|
| 17 |
<aggregateoccurrence> |
|
| 18 |
<notes>$Observations</notes> |
|
| 19 |
<plantobservation> |
|
| 20 |
<collectionnumber>$Tree number</collectionnumber> |
|
| 21 |
<specimenreplicate><catalognumber_dwc>$Specimen</catalognumber_dwc></specimenreplicate> |
|
| 22 |
<stemobservation> |
|
| 23 |
<authorstemcode>$Trunk</authorstemcode> |
|
| 24 |
<definedvalue fkey="tablerecord_id"> |
|
| 25 |
<userdefined_id> |
|
| 26 |
<userdefined> |
|
| 27 |
<tablename>stemobservation</tablename> |
|
| 28 |
<userdefinedname>lianaInfestation</userdefinedname> |
|
| 29 |
</userdefined> |
|
| 30 |
</userdefined_id> |
|
| 31 |
<definedvalue>$Liana presence</definedvalue> |
|
| 32 |
</definedvalue> |
|
| 33 |
<diameterbreastheight>$Diameter</diameterbreastheight> |
|
| 34 |
<height>$Total height</height> |
|
| 35 |
<stemtag> |
|
| 36 |
<iscurrent>true</iscurrent> |
|
| 37 |
<tag>$Tag number</tag> |
|
| 38 |
</stemtag> |
|
| 39 |
<xposition>$Subplot X</xposition> |
|
| 40 |
<yposition>$Subplot Y</yposition> |
|
| 41 |
</stemobservation> |
|
| 42 |
</plantobservation> |
|
| 43 |
</aggregateoccurrence> |
|
| 44 |
<authortaxoncode> |
|
| 45 |
<_alt> |
|
| 46 |
<1>$Tree number</1> |
|
| 47 |
<2>$Specie+autor</2> |
|
| 48 |
</_alt> |
|
| 49 |
</authortaxoncode> |
|
| 50 |
<growthform> |
|
| 51 |
<_map> |
|
| 52 |
<T>tree</T> |
|
| 53 |
<Arbol>tree</Arbol> |
|
| 54 |
<palm>tree</palm> |
|
| 55 |
<H>hemiepiphyte</H> |
|
| 56 |
<Hemiepífito>hemiepiphyte</Hemiepífito> |
|
| 57 |
<L>liana</L> |
|
| 58 |
<l>liana</l> |
|
| 59 |
<L?>liana</L?> |
|
| 60 |
<Liana>liana</Liana> |
|
| 61 |
<E>epiphyte</E> |
|
| 62 |
<S>shrub</S> |
|
| 63 |
<Hb>herb</Hb> |
|
| 64 |
<vine-herbaceous>vine</vine-herbaceous> |
|
| 65 |
<graminoid>grass</graminoid> |
|
| 66 |
<rosette>forb</rosette> |
|
| 67 |
<*>*</*> |
|
| 68 |
<value>$Habit</value> |
|
| 69 |
</_map> |
|
| 70 |
</growthform> |
|
| 71 |
<taxondetermination> |
|
| 72 |
<party_id> |
|
| 73 |
<party> |
|
| 74 |
<givenname><_namePart><first>$Determined by</first></_namePart></givenname> |
|
| 75 |
<middlename><_namePart><middle>$Determined by</middle></_namePart></middlename> |
|
| 76 |
<surname><_namePart><last>$Determined by</last></_namePart></surname> |
|
| 77 |
</party> |
|
| 78 |
</party_id> |
|
| 79 |
<plantconcept_id> |
|
| 80 |
<plantconcept> |
|
| 81 |
<plantname_id> |
|
| 82 |
<_simplifyPath> |
|
| 83 |
<next>parent_id</next> |
|
| 84 |
<path> |
|
| 86 | 85 |
<plantname> |
| 87 |
<rank>authority</rank> |
|
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Added /_simplifyPath:[next=parent_id]/path to root so the returned subplot location will be its parent location if there is no subplot name or ID (indicating that that particular plot did not have subplots). Note that this also causes the parent_id forwarding effect to occur for all other tables containing parent_id, which will help prevent similar issues with subplot events, etc. This will hopefully fix the SALVIAS.plotObservations bug where some organisms did not have a subplot #, causing the subplot location to become NULL and causing the corresponding locationevent rows not to match the locationevent_unique_within_location index filter condition (which requires a parent_id), which caused multiple output table pkeys to be returned for those rows, violating the locationevent_pkeys temp table's primary key.