Revision 4621
Added by Aaron Marcuse-Kubitza almost 12 years ago
| inputs/CTFS/SubplotObservation/test.xml.ref | ||
|---|---|---|
| 1 | 1 |
Put template: |
| 2 | 2 |
<VegBIEN> |
| 3 |
<location id="-1"> |
|
| 4 |
<parent_id><location><sourceaccessioncode>$PlotID</sourceaccessioncode></location></parent_id> |
|
| 5 |
<authorlocationcode>$QuadratID</authorlocationcode> |
|
| 6 |
<locationevent> |
|
| 7 |
<parent_id> |
|
| 3 |
<_simplifyPath id="-1"> |
|
| 4 |
<next>parent_id</next> |
|
| 5 |
<path> |
|
| 6 |
<location> |
|
| 7 |
<parent_id><location><sourceaccessioncode>$PlotID</sourceaccessioncode></location></parent_id> |
|
| 8 |
<authorlocationcode>$QuadratID</authorlocationcode> |
|
| 8 | 9 |
<locationevent> |
| 9 |
<location_id><location><sourceaccessioncode>$PlotID</sourceaccessioncode></location></location_id> |
|
| 10 |
<sourceaccessioncode>$CensusID</sourceaccessioncode> |
|
| 10 |
<parent_id> |
|
| 11 |
<locationevent> |
|
| 12 |
<location_id><location><sourceaccessioncode>$PlotID</sourceaccessioncode></location></location_id> |
|
| 13 |
<sourceaccessioncode>$CensusID</sourceaccessioncode> |
|
| 14 |
</locationevent> |
|
| 15 |
</parent_id> |
|
| 11 | 16 |
</locationevent> |
| 12 |
</parent_id>
|
|
| 13 |
</locationevent>
|
|
| 14 |
</location>
|
|
| 17 |
</location>
|
|
| 18 |
</path>
|
|
| 19 |
</_simplifyPath>
|
|
| 15 | 20 |
</VegBIEN> |
| 16 | 21 |
Inserted 7 new rows into database |
| inputs/FIA/Organism/VegBIEN.csv | ||
|---|---|---|
| 1 |
FIA[Veg+],VegBIEN:,Comments |
|
| 1 |
FIA[Veg+],VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
|
|
| 2 | 2 |
PlotCD,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists", |
| 3 | 3 |
PlotCD,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode", |
| 4 | 4 |
PlotCD,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode", |
| inputs/SALVIAS/plotMetadata/test.xml.ref | ||
|---|---|---|
| 1 | 1 |
Put template: |
| 2 | 2 |
<VegBIEN> |
| 3 |
<location id="-1"> |
|
| 4 |
<authorlocationcode>$SiteCode</authorlocationcode> |
|
| 5 |
<sourceaccessioncode>$PlotID</sourceaccessioncode> |
|
| 6 |
<area>$plot_area_ha</area> |
|
| 7 |
<elevation> |
|
| 8 |
<_alt> |
|
| 9 |
<1> |
|
| 10 |
<_replace> |
|
| 11 |
<\bca\.?></\bca\.?> |
|
| 12 |
<value>$Elev</value> |
|
| 13 |
</_replace> |
|
| 14 |
</1> |
|
| 15 |
<2> |
|
| 16 |
<_avg> |
|
| 17 |
<max> |
|
| 3 |
<_simplifyPath id="-1"> |
|
| 4 |
<next>parent_id</next> |
|
| 5 |
<path> |
|
| 6 |
<location> |
|
| 7 |
<authorlocationcode>$SiteCode</authorlocationcode> |
|
| 8 |
<sourceaccessioncode>$PlotID</sourceaccessioncode> |
|
| 9 |
<area>$plot_area_ha</area> |
|
| 10 |
<elevation> |
|
| 11 |
<_alt> |
|
| 12 |
<1> |
|
| 13 |
<_replace> |
|
| 14 |
<\bca\.?></\bca\.?> |
|
| 15 |
<value>$Elev</value> |
|
| 16 |
</_replace> |
|
| 17 |
</1> |
|
| 18 |
<2> |
|
| 19 |
<_avg> |
|
| 20 |
<max> |
|
| 21 |
<_units> |
|
| 22 |
<default>m</default> |
|
| 23 |
<to>m</to> |
|
| 24 |
<to></to> |
|
| 25 |
<value> |
|
| 26 |
<_replace> |
|
| 27 |
<\bca\.?></\bca\.?> |
|
| 28 |
<value>$elev_max_m</value> |
|
| 29 |
</_replace> |
|
| 30 |
</value> |
|
| 31 |
</_units> |
|
| 32 |
</max> |
|
| 33 |
<min> |
|
| 34 |
<_units> |
|
| 35 |
<default>m</default> |
|
| 36 |
<to>m</to> |
|
| 37 |
<to></to> |
|
| 38 |
<value> |
|
| 39 |
<_rangeStart> |
|
| 40 |
<value> |
|
| 41 |
<_replace> |
|
| 42 |
<\bca\.?></\bca\.?> |
|
| 43 |
<value>$elev_min_m</value> |
|
| 44 |
</_replace> |
|
| 45 |
</value> |
|
| 46 |
</_rangeStart> |
|
| 47 |
</value> |
|
| 48 |
</_units> |
|
| 49 |
</min> |
|
| 50 |
</_avg> |
|
| 51 |
</2> |
|
| 52 |
</_alt> |
|
| 53 |
</elevation> |
|
| 54 |
<elevationrange> |
|
| 55 |
<_range> |
|
| 56 |
<from> |
|
| 18 | 57 |
<_units> |
| 19 | 58 |
<default>m</default> |
| 20 | 59 |
<to>m</to> |
| 21 | 60 |
<to></to> |
| 22 | 61 |
<value> |
| 23 |
<_replace> |
|
| 24 |
<\bca\.?></\bca\.?> |
|
| 25 |
<value>$elev_max_m</value> |
|
| 26 |
</_replace> |
|
| 27 |
</value> |
|
| 28 |
</_units> |
|
| 29 |
</max> |
|
| 30 |
<min> |
|
| 31 |
<_units> |
|
| 32 |
<default>m</default> |
|
| 33 |
<to>m</to> |
|
| 34 |
<to></to> |
|
| 35 |
<value> |
|
| 36 | 62 |
<_rangeStart> |
| 37 | 63 |
<value> |
| 38 | 64 |
<_replace> |
| ... | ... | |
| 43 | 69 |
</_rangeStart> |
| 44 | 70 |
</value> |
| 45 | 71 |
</_units> |
| 46 |
</min> |
|
| 47 |
</_avg> |
|
| 48 |
</2> |
|
| 49 |
</_alt> |
|
| 50 |
</elevation> |
|
| 51 |
<elevationrange> |
|
| 52 |
<_range> |
|
| 53 |
<from> |
|
| 54 |
<_units> |
|
| 55 |
<default>m</default> |
|
| 56 |
<to>m</to> |
|
| 57 |
<to></to> |
|
| 58 |
<value> |
|
| 59 |
<_rangeStart> |
|
| 72 |
</from> |
|
| 73 |
<to> |
|
| 74 |
<_units> |
|
| 75 |
<default>m</default> |
|
| 76 |
<to>m</to> |
|
| 77 |
<to></to> |
|
| 60 | 78 |
<value> |
| 61 |
<_replace> |
|
| 62 |
<\bca\.?></\bca\.?> |
|
| 63 |
<value>$elev_min_m</value> |
|
| 64 |
</_replace> |
|
| 65 |
</value> |
|
| 66 |
</_rangeStart> |
|
| 67 |
</value> |
|
| 68 |
</_units> |
|
| 69 |
</from> |
|
| 70 |
<to> |
|
| 71 |
<_units> |
|
| 72 |
<default>m</default> |
|
| 73 |
<to>m</to> |
|
| 74 |
<to></to> |
|
| 75 |
<value> |
|
| 76 |
<_alt> |
|
| 77 |
<1> |
|
| 78 |
<_replace> |
|
| 79 |
<\bca\.?></\bca\.?> |
|
| 80 |
<value>$elev_max_m</value> |
|
| 81 |
</_replace> |
|
| 82 |
</1> |
|
| 83 |
<2> |
|
| 84 |
<_rangeEnd> |
|
| 85 |
<value> |
|
| 79 |
<_alt> |
|
| 80 |
<1> |
|
| 86 | 81 |
<_replace> |
| 87 | 82 |
<\bca\.?></\bca\.?> |
| 88 |
<value>$elev_min_m</value>
|
|
| 83 |
<value>$elev_max_m</value>
|
|
| 89 | 84 |
</_replace> |
| 90 |
</value> |
|
| 91 |
</_rangeEnd> |
|
| 92 |
</2> |
|
| 93 |
</_alt> |
|
| 94 |
</value> |
|
| 95 |
</_units> |
|
| 96 |
</to> |
|
| 97 |
</_range> |
|
| 98 |
</elevationrange> |
|
| 99 |
<locationdetermination> |
|
| 100 |
<latitude> |
|
| 101 |
<_nullIf> |
|
| 102 |
<null>0</null> |
|
| 103 |
<type>float</type> |
|
| 104 |
<value>$LatDec</value> |
|
| 105 |
</_nullIf> |
|
| 106 |
</latitude> |
|
| 107 |
<longitude> |
|
| 108 |
<_nullIf> |
|
| 109 |
<null>0</null> |
|
| 110 |
<type>float</type> |
|
| 111 |
<value>$LongDec</value> |
|
| 112 |
</_nullIf> |
|
| 113 |
</longitude> |
|
| 114 |
<namedplace_id> |
|
| 115 |
<_simplifyPath> |
|
| 116 |
<next>parent_id</next> |
|
| 117 |
<path> |
|
| 118 |
<namedplace> |
|
| 119 |
<rank>county</rank> |
|
| 120 |
<placename>$pol2</placename> |
|
| 121 |
<parent_id> |
|
| 85 |
</1> |
|
| 86 |
<2> |
|
| 87 |
<_rangeEnd> |
|
| 88 |
<value> |
|
| 89 |
<_replace> |
|
| 90 |
<\bca\.?></\bca\.?> |
|
| 91 |
<value>$elev_min_m</value> |
|
| 92 |
</_replace> |
|
| 93 |
</value> |
|
| 94 |
</_rangeEnd> |
|
| 95 |
</2> |
|
| 96 |
</_alt> |
|
| 97 |
</value> |
|
| 98 |
</_units> |
|
| 99 |
</to> |
|
| 100 |
</_range> |
|
| 101 |
</elevationrange> |
|
| 102 |
<locationdetermination> |
|
| 103 |
<latitude> |
|
| 104 |
<_nullIf> |
|
| 105 |
<null>0</null> |
|
| 106 |
<type>float</type> |
|
| 107 |
<value>$LatDec</value> |
|
| 108 |
</_nullIf> |
|
| 109 |
</latitude> |
|
| 110 |
<longitude> |
|
| 111 |
<_nullIf> |
|
| 112 |
<null>0</null> |
|
| 113 |
<type>float</type> |
|
| 114 |
<value>$LongDec</value> |
|
| 115 |
</_nullIf> |
|
| 116 |
</longitude> |
|
| 117 |
<namedplace_id> |
|
| 118 |
<_simplifyPath> |
|
| 119 |
<next>parent_id</next> |
|
| 120 |
<path> |
|
| 122 | 121 |
<namedplace> |
| 123 |
<rank>stateProvince</rank>
|
|
| 124 |
<placename>$PolDiv1</placename>
|
|
| 122 |
<rank>county</rank>
|
|
| 123 |
<placename>$pol2</placename>
|
|
| 125 | 124 |
<parent_id> |
| 126 | 125 |
<namedplace> |
| 127 |
<rank>country</rank>
|
|
| 128 |
<placename>$Country</placename>
|
|
| 126 |
<rank>stateProvince</rank>
|
|
| 127 |
<placename>$PolDiv1</placename>
|
|
| 129 | 128 |
<parent_id> |
| 130 | 129 |
<namedplace> |
| 131 |
<rank>continent</rank> |
|
| 132 |
<placename>$MajorGeo</placename> |
|
| 130 |
<rank>country</rank> |
|
| 131 |
<placename>$Country</placename> |
|
| 132 |
<parent_id> |
|
| 133 |
<namedplace> |
|
| 134 |
<rank>continent</rank> |
|
| 135 |
<placename>$MajorGeo</placename> |
|
| 136 |
</namedplace> |
|
| 137 |
</parent_id> |
|
| 133 | 138 |
</namedplace> |
| 134 | 139 |
</parent_id> |
| 135 | 140 |
</namedplace> |
| 136 | 141 |
</parent_id> |
| 137 | 142 |
</namedplace> |
| 138 |
</parent_id>
|
|
| 139 |
</namedplace>
|
|
| 140 |
</path>
|
|
| 141 |
</_simplifyPath>
|
|
| 142 |
</namedplace_id>
|
|
| 143 |
</locationdetermination>
|
|
| 144 |
<locationevent>
|
|
| 145 |
<method_id><method><name>$PlotMethod</name></method></method_id>
|
|
| 146 |
<project_id><project><sourceaccessioncode>$project_id</sourceaccessioncode></project></project_id>
|
|
| 147 |
<commclass>
|
|
| 148 |
<commdetermination>
|
|
| 149 |
<commconcept_id>
|
|
| 150 |
<commconcept>
|
|
| 151 |
<commname_id><commname><commname>$life_zone_code</commname></commname></commname_id>
|
|
| 152 |
<commdescription>$life_zone</commdescription>
|
|
| 153 |
</commconcept>
|
|
| 154 |
</commconcept_id>
|
|
| 155 |
</commdetermination>
|
|
| 156 |
</commclass>
|
|
| 157 |
<obsenddate><_date><date>$date_finish</date></_date></obsenddate>
|
|
| 158 |
<obsstartdate><_date><date>$date_start</date></_date></obsstartdate>
|
|
| 159 |
<precipitation>$Precip</precipitation>
|
|
| 160 |
<soilobs>
|
|
| 161 |
<acidity>
|
|
| 162 |
<_units>
|
|
| 163 |
<default>%</default>
|
|
| 164 |
<to></to>
|
|
| 165 |
<value>
|
|
| 166 |
<_map>
|
|
| 167 |
<<0.05>0</<0.05>
|
|
| 168 |
<*>*</*>
|
|
| 169 |
<value>$soil_acidity</value>
|
|
| 170 |
</_map>
|
|
| 171 |
</value>
|
|
| 172 |
</_units>
|
|
| 173 |
</acidity>
|
|
| 174 |
<basesaturation>
|
|
| 175 |
<_units>
|
|
| 176 |
<default>%</default>
|
|
| 177 |
<to></to>
|
|
| 178 |
<value>$soil_base</value>
|
|
| 179 |
</_units>
|
|
| 180 |
</basesaturation>
|
|
| 181 |
<calcium>
|
|
| 182 |
<_units>
|
|
| 183 |
<default>%</default>
|
|
| 184 |
<to></to>
|
|
| 185 |
<value>$soil_Ca</value>
|
|
| 186 |
</_units>
|
|
| 187 |
</calcium>
|
|
| 188 |
<carbon>
|
|
| 189 |
<_units>
|
|
| 190 |
<default>%</default>
|
|
| 191 |
<to></to>
|
|
| 192 |
<value>$soil_C</value>
|
|
| 193 |
</_units>
|
|
| 194 |
</carbon>
|
|
| 195 |
<cationexchangecapacity>$soil_cation_cap</cationexchangecapacity>
|
|
| 196 |
<clay>
|
|
| 197 |
<_units>
|
|
| 198 |
<default>%</default>
|
|
| 199 |
<to></to>
|
|
| 200 |
<value>$clay_percent</value>
|
|
| 201 |
</_units>
|
|
| 202 |
</clay>
|
|
| 203 |
<conductivity>$soil_conductivity</conductivity>
|
|
| 204 |
<magnesium>
|
|
| 205 |
<_units>
|
|
| 206 |
<default>%</default>
|
|
| 207 |
<to></to>
|
|
| 208 |
<value>$soil_Mg</value>
|
|
| 209 |
</_units>
|
|
| 210 |
</magnesium>
|
|
| 211 |
<nitrogen>
|
|
| 212 |
<_units>
|
|
| 213 |
<default>%</default>
|
|
| 214 |
<to></to>
|
|
| 215 |
<value>$soil_N</value>
|
|
| 216 |
</_units>
|
|
| 217 |
</nitrogen>
|
|
| 218 |
<organic>
|
|
| 219 |
<_units>
|
|
| 220 |
<default>%</default>
|
|
| 221 |
<to></to>
|
|
| 222 |
<value>$organic_percent</value>
|
|
| 223 |
</_units>
|
|
| 224 |
</organic>
|
|
| 225 |
<ph>$pH</ph>
|
|
| 226 |
<phosphorus>
|
|
| 227 |
<_units>
|
|
| 228 |
<default>%</default>
|
|
| 229 |
<to></to>
|
|
| 230 |
<value>
|
|
| 231 |
<_map>
|
|
| 232 |
<<1,5>0</<1,5>
|
|
| 233 |
<*>*</*>
|
|
| 234 |
<value>$soil_P</value>
|
|
| 235 |
</_map>
|
|
| 236 |
</value>
|
|
| 237 |
</_units>
|
|
| 238 |
</phosphorus>
|
|
| 239 |
<potassium>
|
|
| 240 |
<_units>
|
|
| 241 |
<default>%</default>
|
|
| 242 |
<to></to>
|
|
| 243 |
<value>$soil_K</value>
|
|
| 244 |
</_units>
|
|
| 245 |
</potassium>
|
|
| 246 |
<sand>
|
|
| 247 |
<_units>
|
|
| 248 |
<default>%</default>
|
|
| 249 |
<to></to>
|
|
| 250 |
<value>$sand_percent</value>
|
|
| 251 |
</_units>
|
|
| 252 |
</sand>
|
|
| 253 |
<silt>
|
|
| 254 |
<_units>
|
|
| 255 |
<default>%</default>
|
|
| 256 |
<to></to>
|
|
| 257 |
<value>$silt_percent</value>
|
|
| 258 |
</_units>
|
|
| 259 |
</silt>
|
|
| 260 |
<sodium>
|
|
| 261 |
<_units>
|
|
| 262 |
<default>%</default>
|
|
| 263 |
<to></to>
|
|
| 264 |
<value>$soil_Na</value>
|
|
| 265 |
</_units>
|
|
| 266 |
</sodium>
|
|
| 267 |
<texture>
|
|
| 268 |
<_units>
|
|
| 269 |
<default>%</default>
|
|
| 270 |
<to></to>
|
|
| 271 |
<value>$soil_texture</value>
|
|
| 272 |
</_units>
|
|
| 273 |
</texture>
|
|
| 274 |
</soilobs>
|
|
| 275 |
<temperature>$Temp</temperature>
|
|
| 276 |
</locationevent>
|
|
| 277 |
<locationnarrative>$Locality_Description</locationnarrative>
|
|
| 278 |
<slopeaspect><_compass><value>$slope_aspect</value></_compass></slopeaspect>
|
|
| 279 |
<slopegradient>$slope_gradient</slopegradient>
|
|
| 280 |
</location>
|
|
| 143 |
</path>
|
|
| 144 |
</_simplifyPath>
|
|
| 145 |
</namedplace_id>
|
|
| 146 |
</locationdetermination>
|
|
| 147 |
<locationevent>
|
|
| 148 |
<method_id><method><name>$PlotMethod</name></method></method_id>
|
|
| 149 |
<project_id><project><sourceaccessioncode>$project_id</sourceaccessioncode></project></project_id>
|
|
| 150 |
<commclass>
|
|
| 151 |
<commdetermination>
|
|
| 152 |
<commconcept_id>
|
|
| 153 |
<commconcept>
|
|
| 154 |
<commname_id><commname><commname>$life_zone_code</commname></commname></commname_id>
|
|
| 155 |
<commdescription>$life_zone</commdescription>
|
|
| 156 |
</commconcept>
|
|
| 157 |
</commconcept_id>
|
|
| 158 |
</commdetermination>
|
|
| 159 |
</commclass>
|
|
| 160 |
<obsenddate><_date><date>$date_finish</date></_date></obsenddate>
|
|
| 161 |
<obsstartdate><_date><date>$date_start</date></_date></obsstartdate>
|
|
| 162 |
<precipitation>$Precip</precipitation>
|
|
| 163 |
<soilobs>
|
|
| 164 |
<acidity>
|
|
| 165 |
<_units>
|
|
| 166 |
<default>%</default>
|
|
| 167 |
<to></to>
|
|
| 168 |
<value>
|
|
| 169 |
<_map>
|
|
| 170 |
<<0.05>0</<0.05>
|
|
| 171 |
<*>*</*>
|
|
| 172 |
<value>$soil_acidity</value>
|
|
| 173 |
</_map>
|
|
| 174 |
</value> |
|
| 175 |
</_units>
|
|
| 176 |
</acidity>
|
|
| 177 |
<basesaturation>
|
|
| 178 |
<_units>
|
|
| 179 |
<default>%</default>
|
|
| 180 |
<to></to>
|
|
| 181 |
<value>$soil_base</value>
|
|
| 182 |
</_units>
|
|
| 183 |
</basesaturation>
|
|
| 184 |
<calcium>
|
|
| 185 |
<_units>
|
|
| 186 |
<default>%</default>
|
|
| 187 |
<to></to>
|
|
| 188 |
<value>$soil_Ca</value>
|
|
| 189 |
</_units>
|
|
| 190 |
</calcium>
|
|
| 191 |
<carbon>
|
|
| 192 |
<_units>
|
|
| 193 |
<default>%</default>
|
|
| 194 |
<to></to>
|
|
| 195 |
<value>$soil_C</value>
|
|
| 196 |
</_units>
|
|
| 197 |
</carbon>
|
|
| 198 |
<cationexchangecapacity>$soil_cation_cap</cationexchangecapacity>
|
|
| 199 |
<clay>
|
|
| 200 |
<_units>
|
|
| 201 |
<default>%</default>
|
|
| 202 |
<to></to>
|
|
| 203 |
<value>$clay_percent</value>
|
|
| 204 |
</_units>
|
|
| 205 |
</clay>
|
|
| 206 |
<conductivity>$soil_conductivity</conductivity>
|
|
| 207 |
<magnesium>
|
|
| 208 |
<_units>
|
|
| 209 |
<default>%</default>
|
|
| 210 |
<to></to>
|
|
| 211 |
<value>$soil_Mg</value>
|
|
| 212 |
</_units>
|
|
| 213 |
</magnesium>
|
|
| 214 |
<nitrogen>
|
|
| 215 |
<_units>
|
|
| 216 |
<default>%</default>
|
|
| 217 |
<to></to>
|
|
| 218 |
<value>$soil_N</value>
|
|
| 219 |
</_units>
|
|
| 220 |
</nitrogen>
|
|
| 221 |
<organic>
|
|
| 222 |
<_units>
|
|
| 223 |
<default>%</default>
|
|
| 224 |
<to></to>
|
|
| 225 |
<value>$organic_percent</value>
|
|
| 226 |
</_units>
|
|
| 227 |
</organic>
|
|
| 228 |
<ph>$pH</ph>
|
|
| 229 |
<phosphorus>
|
|
| 230 |
<_units>
|
|
| 231 |
<default>%</default>
|
|
| 232 |
<to></to>
|
|
| 233 |
<value>
|
|
| 234 |
<_map>
|
|
| 235 |
<<1,5>0</<1,5>
|
|
| 236 |
<*>*</*>
|
|
| 237 |
<value>$soil_P</value>
|
|
| 238 |
</_map>
|
|
| 239 |
</value> |
|
| 240 |
</_units>
|
|
| 241 |
</phosphorus>
|
|
| 242 |
<potassium>
|
|
| 243 |
<_units>
|
|
| 244 |
<default>%</default>
|
|
| 245 |
<to></to>
|
|
| 246 |
<value>$soil_K</value>
|
|
| 247 |
</_units>
|
|
| 248 |
</potassium>
|
|
| 249 |
<sand>
|
|
| 250 |
<_units>
|
|
| 251 |
<default>%</default>
|
|
| 252 |
<to></to>
|
|
| 253 |
<value>$sand_percent</value>
|
|
| 254 |
</_units>
|
|
| 255 |
</sand>
|
|
| 256 |
<silt>
|
|
| 257 |
<_units>
|
|
| 258 |
<default>%</default>
|
|
| 259 |
<to></to>
|
|
| 260 |
<value>$silt_percent</value>
|
|
| 261 |
</_units>
|
|
| 262 |
</silt>
|
|
| 263 |
<sodium>
|
|
| 264 |
<_units>
|
|
| 265 |
<default>%</default>
|
|
| 266 |
<to></to>
|
|
| 267 |
<value>$soil_Na</value>
|
|
| 268 |
</_units>
|
|
| 269 |
</sodium>
|
|
| 270 |
<texture>
|
|
| 271 |
<_units>
|
|
| 272 |
<default>%</default>
|
|
| 273 |
<to></to>
|
|
| 274 |
<value>$soil_texture</value>
|
|
| 275 |
</_units>
|
|
| 276 |
</texture>
|
|
| 277 |
</soilobs>
|
|
| 278 |
<temperature>$Temp</temperature>
|
|
| 279 |
</locationevent>
|
|
| 280 |
<locationnarrative>$Locality_Description</locationnarrative>
|
|
| 281 |
<slopeaspect><_compass><value>$slope_aspect</value></_compass></slopeaspect>
|
|
| 282 |
<slopegradient>$slope_gradient</slopegradient>
|
|
| 283 |
</location>
|
|
| 284 |
</path>
|
|
| 285 |
</_simplifyPath>
|
|
| 281 | 286 |
</VegBIEN> |
| 282 | 287 |
Inserted 23 new rows into database |
| inputs/SALVIAS/stems/VegBIEN.csv | ||
|---|---|---|
| 1 |
SALVIAS,VegBIEN:,Comments |
|
| 1 |
SALVIAS,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
|
|
| 2 | 2 |
PlotObsID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
| 3 | 3 |
NoInd,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemcount, |
| 4 | 4 |
basal_diam,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/basaldiameter, |
| inputs/CTFS/StemObservation/VegBIEN.csv | ||
|---|---|---|
| 1 |
CTFS[Veg+],VegBIEN:,Comments |
|
| 1 |
CTFS[Veg+],VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
|
|
| 2 | 2 |
QuadratID,"/location/_if[@name=""if subplot""]/cond/_exists/_first/2",Not globally unique; unique only within Site |
| 3 | 3 |
plotID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists", |
| 4 | 4 |
plotID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode", |
| inputs/CTFS/Subplot/VegBIEN.csv | ||
|---|---|---|
| 1 |
CTFS[Veg+],VegBIEN:,Comments |
|
| 1 |
CTFS[Veg+],VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
|
|
| 2 | 2 |
QuadratID,"/location/_if[@name=""if subplot""]/cond/_exists/_first/2",Not globally unique; unique only within Site |
| 3 | 3 |
plotID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists", |
| 4 | 4 |
plotID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode", |
| inputs/CTFS/PlotObservation/VegBIEN.csv | ||
|---|---|---|
| 1 |
CTFS[Veg+],VegBIEN:,Comments |
|
| 1 |
CTFS[Veg+],VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
|
|
| 2 | 2 |
plotID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists", |
| 3 | 3 |
PlotCensusNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/else", |
| 4 | 4 |
plotID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode", |
| inputs/CTFS/TaxonOccurrence/VegBIEN.csv | ||
|---|---|---|
| 1 |
CTFS[Veg+],VegBIEN:,Comments |
|
| 1 |
CTFS[Veg+],VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
|
|
| 2 | 2 |
plotID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists", |
| 3 | 3 |
plotID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode", |
| 4 | 4 |
plotID,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode", |
| inputs/CTFS/SubplotObservation/VegBIEN.csv | ||
|---|---|---|
| 1 |
CTFS[Veg+],VegBIEN:,Comments |
|
| 1 |
CTFS[Veg+],VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
|
|
| 2 | 2 |
QuadratID,"/location/_if[@name=""if subplot""]/cond/_exists/_first/2",Not globally unique; unique only within Site |
| 3 | 3 |
plotID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists", |
| 4 | 4 |
plotID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode", |
| inputs/CTFS/Plot/test.xml.ref | ||
|---|---|---|
| 1 | 1 |
Put template: |
| 2 | 2 |
<VegBIEN> |
| 3 |
<location id="-1">
|
|
| 4 |
<authorlocationcode>$PlotName</authorlocationcode>
|
|
| 5 |
<sourceaccessioncode>$PlotID</sourceaccessioncode>
|
|
| 6 |
<area>$SizeOfSite</area>
|
|
| 7 |
<elevation>
|
|
| 8 |
<_replace>
|
|
| 9 |
<\bca\.?></\bca\.?>
|
|
| 10 |
<value>$Elevation</value>
|
|
| 11 |
</_replace>
|
|
| 12 |
</elevation>
|
|
| 13 |
<locationdetermination>
|
|
| 14 |
<footprintgeometry_dwc>$ShapeOfSite</footprintgeometry_dwc>
|
|
| 15 |
<latitude>
|
|
| 16 |
<_nullIf>
|
|
| 17 |
<null>0</null>
|
|
| 18 |
<type>float</type>
|
|
| 19 |
<value>$Latitude</value>
|
|
| 20 |
</_nullIf>
|
|
| 21 |
</latitude>
|
|
| 22 |
<longitude>
|
|
| 23 |
<_nullIf>
|
|
| 24 |
<null>0</null>
|
|
| 25 |
<type>float</type>
|
|
| 26 |
<value>$Longitude</value>
|
|
| 27 |
</_nullIf>
|
|
| 28 |
</longitude>
|
|
| 29 |
<namedplace_id>
|
|
| 30 |
<_simplifyPath>
|
|
| 31 |
<next>parent_id</next>
|
|
| 32 |
<path>
|
|
| 33 |
<namedplace>
|
|
| 34 |
<rank>county</rank>
|
|
| 35 |
<parent_id>
|
|
| 3 |
<_simplifyPath id="-1">
|
|
| 4 |
<next>parent_id</next>
|
|
| 5 |
<path>
|
|
| 6 |
<location>
|
|
| 7 |
<authorlocationcode>$PlotName</authorlocationcode>
|
|
| 8 |
<sourceaccessioncode>$PlotID</sourceaccessioncode>
|
|
| 9 |
<area>$SizeOfSite</area>
|
|
| 10 |
<elevation>
|
|
| 11 |
<_replace>
|
|
| 12 |
<\bca\.?></\bca\.?>
|
|
| 13 |
<value>$Elevation</value>
|
|
| 14 |
</_replace>
|
|
| 15 |
</elevation>
|
|
| 16 |
<locationdetermination>
|
|
| 17 |
<footprintgeometry_dwc>$ShapeOfSite</footprintgeometry_dwc>
|
|
| 18 |
<latitude>
|
|
| 19 |
<_nullIf>
|
|
| 20 |
<null>0</null>
|
|
| 21 |
<type>float</type>
|
|
| 22 |
<value>$Latitude</value>
|
|
| 23 |
</_nullIf>
|
|
| 24 |
</latitude>
|
|
| 25 |
<longitude>
|
|
| 26 |
<_nullIf>
|
|
| 27 |
<null>0</null>
|
|
| 28 |
<type>float</type>
|
|
| 29 |
<value>$Longitude</value>
|
|
| 30 |
</_nullIf>
|
|
| 31 |
</longitude>
|
|
| 32 |
<namedplace_id>
|
|
| 33 |
<_simplifyPath>
|
|
| 34 |
<next>parent_id</next>
|
|
| 35 |
<path>
|
|
| 36 | 36 |
<namedplace> |
| 37 |
<rank>stateProvince</rank>
|
|
| 37 |
<rank>county</rank>
|
|
| 38 | 38 |
<parent_id> |
| 39 | 39 |
<namedplace> |
| 40 |
<rank>country</rank> |
|
| 41 |
<placename>$CountryName</placename> |
|
| 40 |
<rank>stateProvince</rank> |
|
| 41 |
<parent_id> |
|
| 42 |
<namedplace> |
|
| 43 |
<rank>country</rank> |
|
| 44 |
<placename>$CountryName</placename> |
|
| 45 |
</namedplace> |
|
| 46 |
</parent_id> |
|
| 42 | 47 |
</namedplace> |
| 43 | 48 |
</parent_id> |
| 44 | 49 |
</namedplace> |
| 45 |
</parent_id>
|
|
| 46 |
</namedplace>
|
|
| 47 |
</path>
|
|
| 48 |
</_simplifyPath>
|
|
| 49 |
</namedplace_id>
|
|
| 50 |
</locationdetermination>
|
|
| 51 |
<locationnarrative>
|
|
| 52 |
<_alt>
|
|
| 53 |
<0>$DescriptionOfSite</0>
|
|
| 54 |
<1>$LocationName</1>
|
|
| 55 |
</_alt>
|
|
| 56 |
</locationnarrative>
|
|
| 57 |
</location>
|
|
| 50 |
</path>
|
|
| 51 |
</_simplifyPath>
|
|
| 52 |
</namedplace_id>
|
|
| 53 |
</locationdetermination>
|
|
| 54 |
<locationnarrative>
|
|
| 55 |
<_alt>
|
|
| 56 |
<0>$DescriptionOfSite</0>
|
|
| 57 |
<1>$LocationName</1>
|
|
| 58 |
</_alt>
|
|
| 59 |
</locationnarrative>
|
|
| 60 |
</location>
|
|
| 61 |
</path>
|
|
| 62 |
</_simplifyPath>
|
|
| 58 | 63 |
</VegBIEN> |
| 59 | 64 |
Inserted 6 new rows into database |
| inputs/SALVIAS/plotMetadata/VegBIEN.csv | ||
|---|---|---|
| 1 |
SALVIAS,VegBIEN:,Comments |
|
| 1 |
SALVIAS,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
|
|
| 2 | 2 |
SiteCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project) |
| 3 | 3 |
PlotID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata." |
| 4 | 4 |
PlotID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata." |
| inputs/SALVIAS/projects/test.xml.ref | ||
|---|---|---|
| 1 | 1 |
Put template: |
| 2 | 2 |
<VegBIEN> |
| 3 |
<location id="-1"> |
|
| 4 |
<locationevent> |
|
| 5 |
<project_id> |
|
| 6 |
<project> |
|
| 7 |
<projectname>$project_name</projectname> |
|
| 8 |
<sourceaccessioncode>$project_id</sourceaccessioncode> |
|
| 9 |
</project> |
|
| 10 |
</project_id> |
|
| 11 |
</locationevent> |
|
| 12 |
</location> |
|
| 3 |
<_simplifyPath id="-1"> |
|
| 4 |
<next>parent_id</next> |
|
| 5 |
<path> |
|
| 6 |
<location> |
|
| 7 |
<locationevent> |
|
| 8 |
<project_id> |
|
| 9 |
<project> |
|
| 10 |
<projectname>$project_name</projectname> |
|
| 11 |
<sourceaccessioncode>$project_id</sourceaccessioncode> |
|
| 12 |
</project> |
|
| 13 |
</project_id> |
|
| 14 |
</locationevent> |
|
| 15 |
</location> |
|
| 16 |
</path> |
|
| 17 |
</_simplifyPath> |
|
| 13 | 18 |
</VegBIEN> |
| 14 | 19 |
Inserted 3 new rows into database |
| inputs/U/Specimen/VegBIEN.csv | ||
|---|---|---|
| 1 |
U[Veg+],VegBIEN:,Comments |
|
| 1 |
U[Veg+],VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
|
|
| 2 | 2 |
ID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1", |
| 3 | 3 |
Barcode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else", |
| 4 | 4 |
Lat,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value", |
| inputs/GBIF/Specimen/VegBIEN.csv | ||
|---|---|---|
| 1 |
GBIF[Veg+],VegBIEN:,Comments |
|
| 1 |
GBIF[Veg+],VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
|
|
| 2 | 2 |
InstitutionCD,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1", |
| 3 | 3 |
CollectionCD,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1", |
| 4 | 4 |
CatalogNO,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else", |
| inputs/SALVIAS/plotObservations/test.xml.ref | ||
|---|---|---|
| 1 | 1 |
Put template: |
| 2 | 2 |
<VegBIEN> |
| 3 |
<location id="-1"> |
|
| 4 |
<parent_id> |
|
| 3 |
<_simplifyPath id="-1"> |
|
| 4 |
<next>parent_id</next> |
|
| 5 |
<path> |
|
| 5 | 6 |
<location> |
| 6 |
<authorlocationcode>$PlotCode</authorlocationcode> |
|
| 7 |
<sourceaccessioncode>$PlotID</sourceaccessioncode> |
|
| 8 |
</location> |
|
| 9 |
</parent_id> |
|
| 10 |
<authorlocationcode>$Line</authorlocationcode> |
|
| 11 |
<locationevent> |
|
| 12 |
<obsenddate><_date><date><_dateRangeEnd><value>$census_date</value></_dateRangeEnd></date></_date></obsenddate> |
|
| 13 |
<obsstartdate><_date><date><_dateRangeStart><value>$census_date</value></_dateRangeStart></date></_date></obsstartdate> |
|
| 14 |
<taxonoccurrence> |
|
| 15 |
<aggregateoccurrence> |
|
| 16 |
<count>$NoInd</count> |
|
| 17 |
<cover>$cover_percent</cover> |
|
| 18 |
<definedvalue fkey="tablerecord_id"> |
|
| 19 |
<userdefined_id> |
|
| 20 |
<userdefined> |
|
| 21 |
<tablename>aggregateoccurrence</tablename> |
|
| 22 |
<userdefinedname>censusNo</userdefinedname> |
|
| 23 |
</userdefined> |
|
| 24 |
</userdefined_id> |
|
| 25 |
<definedvalue>$census_no</definedvalue> |
|
| 26 |
</definedvalue> |
|
| 27 |
<linecover>$intercept_cm</linecover> |
|
| 28 |
<notes>$Notes</notes> |
|
| 29 |
<plantobservation> |
|
| 30 |
<collectionnumber>$Ind</collectionnumber> |
|
| 31 |
<sourceaccessioncode>$PlotObsID</sourceaccessioncode> |
|
| 32 |
<specimenreplicate> |
|
| 33 |
<catalognumber_dwc> |
|
| 34 |
<_if name="if indirect voucher"> |
|
| 35 |
<cond> |
|
| 36 |
<_eq> |
|
| 37 |
<right>indirect</right> |
|
| 38 |
<left>$DetType</left> |
|
| 39 |
</_eq> |
|
| 40 |
</cond> |
|
| 41 |
<else> |
|
| 42 |
<_alt> |
|
| 43 |
<1>$coll_number</1> |
|
| 44 |
<2>$SourceVoucher</2> |
|
| 45 |
</_alt> |
|
| 46 |
</else> |
|
| 47 |
</_if> |
|
| 48 |
</catalognumber_dwc> |
|
| 49 |
</specimenreplicate> |
|
| 50 |
<stemobservation> |
|
| 7 |
<parent_id> |
|
| 8 |
<location> |
|
| 9 |
<authorlocationcode>$PlotCode</authorlocationcode> |
|
| 10 |
<sourceaccessioncode>$PlotID</sourceaccessioncode> |
|
| 11 |
</location> |
|
| 12 |
</parent_id> |
|
| 13 |
<authorlocationcode>$Line</authorlocationcode> |
|
| 14 |
<locationevent> |
|
| 15 |
<obsenddate><_date><date><_dateRangeEnd><value>$census_date</value></_dateRangeEnd></date></_date></obsenddate> |
|
| 16 |
<obsstartdate><_date><date><_dateRangeStart><value>$census_date</value></_dateRangeStart></date></_date></obsstartdate> |
|
| 17 |
<taxonoccurrence> |
|
| 18 |
<aggregateoccurrence> |
|
| 19 |
<count>$NoInd</count> |
|
| 20 |
<cover>$cover_percent</cover> |
|
| 51 | 21 |
<definedvalue fkey="tablerecord_id"> |
| 52 | 22 |
<userdefined_id> |
| 53 | 23 |
<userdefined> |
| 54 |
<tablename>stemobservation</tablename>
|
|
| 55 |
<userdefinedname>canopyForm</userdefinedname>
|
|
| 24 |
<tablename>aggregateoccurrence</tablename>
|
|
| 25 |
<userdefinedname>censusNo</userdefinedname>
|
|
| 56 | 26 |
</userdefined> |
| 57 | 27 |
</userdefined_id> |
| 58 |
<definedvalue>$canopy_form</definedvalue>
|
|
| 28 |
<definedvalue>$census_no</definedvalue>
|
|
| 59 | 29 |
</definedvalue> |
| 60 |
<definedvalue fkey="tablerecord_id"> |
|
| 61 |
<userdefined_id> |
|
| 62 |
<userdefined> |
|
| 63 |
<tablename>stemobservation</tablename> |
|
| 64 |
<userdefinedname>canopyPosition</userdefinedname> |
|
| 65 |
</userdefined> |
|
| 66 |
</userdefined_id> |
|
| 67 |
<definedvalue>$canopy_position</definedvalue> |
|
| 68 |
</definedvalue> |
|
| 69 |
<definedvalue fkey="tablerecord_id"> |
|
| 70 |
<userdefined_id> |
|
| 71 |
<userdefined> |
|
| 72 |
<tablename>stemobservation</tablename> |
|
| 73 |
<userdefinedname>lianaInfestation</userdefinedname> |
|
| 74 |
</userdefined> |
|
| 75 |
</userdefined_id> |
|
| 76 |
<definedvalue>$liana_infestation</definedvalue> |
|
| 77 |
</definedvalue> |
|
| 78 |
<diameterbreastheight>$temp_dbh</diameterbreastheight> |
|
| 79 |
<height>$height_m</height> |
|
| 80 |
<heightfirstbranch>$ht_first_branch_m</heightfirstbranch> |
|
| 81 |
<stemtag> |
|
| 82 |
<iscurrent> |
|
| 83 |
<_alt> |
|
| 84 |
<2>true</2> |
|
| 85 |
<1>false</1> |
|
| 86 |
</_alt> |
|
| 87 |
</iscurrent> |
|
| 88 |
<tag>$tag1</tag> |
|
| 89 |
</stemtag> |
|
| 90 |
<stemtag> |
|
| 91 |
<iscurrent>true</iscurrent> |
|
| 92 |
<tag>$tag2</tag> |
|
| 93 |
</stemtag> |
|
| 94 |
<xposition>$x_position</xposition> |
|
| 95 |
<yposition>$y_position</yposition> |
|
| 96 |
</stemobservation> |
|
| 97 |
</plantobservation> |
|
| 98 |
</aggregateoccurrence> |
|
| 99 |
<authortaxoncode>$Ind</authortaxoncode> |
|
| 100 |
<growthform> |
|
| 101 |
<_map> |
|
| 102 |
<T>tree</T> |
|
| 103 |
<Arbol>tree</Arbol> |
|
| 104 |
<palm>tree</palm> |
|
| 105 |
<H>hemiepiphyte</H> |
|
| 106 |
<HemiepÃfito>hemiepiphyte</HemiepÃfito> |
|
| 107 |
<L>liana</L> |
|
| 108 |
<l>liana</l> |
|
| 109 |
<L?>liana</L?> |
|
| 110 |
<Liana>liana</Liana> |
|
| 111 |
<E>epiphyte</E> |
|
| 112 |
<S>shrub</S> |
|
| 113 |
<Hb>herb</Hb> |
|
| 114 |
<vine-herbaceous>vine</vine-herbaceous> |
|
| 115 |
<graminoid>grass</graminoid> |
|
| 116 |
<rosette>forb</rosette> |
|
| 117 |
<*>*</*> |
|
| 118 |
<value>$Habit</value> |
|
| 119 |
</_map> |
|
| 120 |
</growthform> |
|
| 121 |
<sourceaccessioncode>$PlotObsID</sourceaccessioncode> |
|
| 122 |
<taxondetermination> |
|
| 123 |
<plantconcept_id> |
|
| 124 |
<plantconcept> |
|
| 125 |
<plantname_id> |
|
| 126 |
<_simplifyPath> |
|
| 127 |
<next>parent_id</next> |
|
| 128 |
<path> |
|
| 129 |
<plantname> |
|
| 130 |
<rank>binomial</rank> |
|
| 131 |
<parent_id> |
|
| 30 |
<linecover>$intercept_cm</linecover> |
|
| 31 |
<notes>$Notes</notes> |
|
| 32 |
<plantobservation> |
|
| 33 |
<collectionnumber>$Ind</collectionnumber> |
|
| 34 |
<sourceaccessioncode>$PlotObsID</sourceaccessioncode> |
|
| 35 |
<specimenreplicate> |
|
| 36 |
<catalognumber_dwc> |
|
| 37 |
<_if name="if indirect voucher"> |
|
| 38 |
<cond> |
|
| 39 |
<_eq> |
|
| 40 |
<right>indirect</right> |
|
| 41 |
<left>$DetType</left> |
|
| 42 |
</_eq> |
|
| 43 |
</cond> |
|
| 44 |
<else> |
|
| 45 |
<_alt> |
|
| 46 |
<1>$coll_number</1> |
|
| 47 |
<2>$SourceVoucher</2> |
|
| 48 |
</_alt> |
|
| 49 |
</else> |
|
| 50 |
</_if> |
|
| 51 |
</catalognumber_dwc> |
|
| 52 |
</specimenreplicate> |
|
| 53 |
<stemobservation> |
|
| 54 |
<definedvalue fkey="tablerecord_id"> |
|
| 55 |
<userdefined_id> |
|
| 56 |
<userdefined> |
|
| 57 |
<tablename>stemobservation</tablename> |
|
| 58 |
<userdefinedname>canopyForm</userdefinedname> |
|
| 59 |
</userdefined> |
|
| 60 |
</userdefined_id> |
|
| 61 |
<definedvalue>$canopy_form</definedvalue> |
|
| 62 |
</definedvalue> |
|
| 63 |
<definedvalue fkey="tablerecord_id"> |
|
| 64 |
<userdefined_id> |
|
| 65 |
<userdefined> |
|
| 66 |
<tablename>stemobservation</tablename> |
|
| 67 |
<userdefinedname>canopyPosition</userdefinedname> |
|
| 68 |
</userdefined> |
|
| 69 |
</userdefined_id> |
|
| 70 |
<definedvalue>$canopy_position</definedvalue> |
|
| 71 |
</definedvalue> |
|
| 72 |
<definedvalue fkey="tablerecord_id"> |
|
| 73 |
<userdefined_id> |
|
| 74 |
<userdefined> |
|
| 75 |
<tablename>stemobservation</tablename> |
|
| 76 |
<userdefinedname>lianaInfestation</userdefinedname> |
|
| 77 |
</userdefined> |
|
| 78 |
</userdefined_id> |
|
| 79 |
<definedvalue>$liana_infestation</definedvalue> |
|
| 80 |
</definedvalue> |
|
| 81 |
<diameterbreastheight>$temp_dbh</diameterbreastheight> |
|
| 82 |
<height>$height_m</height> |
|
| 83 |
<heightfirstbranch>$ht_first_branch_m</heightfirstbranch> |
|
| 84 |
<stemtag> |
|
| 85 |
<iscurrent> |
|
| 86 |
<_alt> |
|
| 87 |
<2>true</2> |
|
| 88 |
<1>false</1> |
|
| 89 |
</_alt> |
|
| 90 |
</iscurrent> |
|
| 91 |
<tag>$tag1</tag> |
|
| 92 |
</stemtag> |
|
| 93 |
<stemtag> |
|
| 94 |
<iscurrent>true</iscurrent> |
|
| 95 |
<tag>$tag2</tag> |
|
| 96 |
</stemtag> |
|
| 97 |
<xposition>$x_position</xposition> |
|
| 98 |
<yposition>$y_position</yposition> |
|
| 99 |
</stemobservation> |
|
| 100 |
</plantobservation> |
|
| 101 |
</aggregateoccurrence> |
|
| 102 |
<authortaxoncode>$Ind</authortaxoncode> |
|
| 103 |
<growthform> |
|
| 104 |
<_map> |
|
| 105 |
<T>tree</T> |
|
| 106 |
<Arbol>tree</Arbol> |
|
| 107 |
<palm>tree</palm> |
|
| 108 |
<H>hemiepiphyte</H> |
|
| 109 |
<HemiepÃfito>hemiepiphyte</HemiepÃfito> |
|
| 110 |
<L>liana</L> |
|
| 111 |
<l>liana</l> |
|
| 112 |
<L?>liana</L?> |
|
| 113 |
<Liana>liana</Liana> |
|
| 114 |
<E>epiphyte</E> |
|
| 115 |
<S>shrub</S> |
|
| 116 |
<Hb>herb</Hb> |
|
| 117 |
<vine-herbaceous>vine</vine-herbaceous> |
|
| 118 |
<graminoid>grass</graminoid> |
|
| 119 |
<rosette>forb</rosette> |
|
| 120 |
<*>*</*> |
|
| 121 |
<value>$Habit</value> |
|
| 122 |
</_map> |
|
| 123 |
</growthform> |
|
| 124 |
<sourceaccessioncode>$PlotObsID</sourceaccessioncode> |
|
| 125 |
<taxondetermination> |
|
| 126 |
<plantconcept_id> |
|
| 127 |
<plantconcept> |
|
| 128 |
<plantname_id> |
|
| 129 |
<_simplifyPath> |
|
| 130 |
<next>parent_id</next> |
|
| 131 |
<path> |
|
| 132 | 132 |
<plantname> |
| 133 |
<rank>authority</rank> |
|
| 134 |
<plantname>$auth</plantname> |
|
| 133 |
<rank>binomial</rank> |
|
| 135 | 134 |
<parent_id> |
| 136 | 135 |
<plantname> |
| 137 |
<rank>subspecies</rank> |
|
| 138 |
<plantname> |
|
| 139 |
<_name> |
|
| 140 |
<first>$infra_rank_1</first> |
|
| 141 |
<last>$infra_ep_1</last> |
|
| 142 |
</_name> |
|
| 143 |
</plantname> |
|
| 136 |
<rank>authority</rank> |
|
| 137 |
<plantname>$auth</plantname> |
|
| 144 | 138 |
<parent_id> |
| 145 | 139 |
<plantname> |
| 146 |
<rank>species</rank> |
|
| 147 |
<plantname>$Species</plantname> |
|
| 140 |
<rank>subspecies</rank> |
|
| 141 |
<plantname> |
|
| 142 |
<_name> |
|
| 143 |
<first>$infra_rank_1</first> |
|
| 144 |
<last>$infra_ep_1</last> |
|
| 145 |
</_name> |
|
| 146 |
</plantname> |
|
| 148 | 147 |
<parent_id> |
| 149 | 148 |
<plantname> |
| 150 |
<rank>genus</rank>
|
|
| 151 |
<plantname>$Genus</plantname>
|
|
| 149 |
<rank>species</rank>
|
|
| 150 |
<plantname>$Species</plantname>
|
|
| 152 | 151 |
<parent_id> |
| 153 | 152 |
<plantname> |
| 154 |
<rank>family</rank> |
|
| 155 |
<plantname>$Family</plantname> |
|
| 153 |
<rank>genus</rank> |
|
| 154 |
<plantname>$Genus</plantname> |
|
| 155 |
<parent_id> |
|
| 156 |
<plantname> |
|
| 157 |
<rank>family</rank> |
|
| 158 |
<plantname>$Family</plantname> |
|
| 159 |
</plantname> |
|
| 160 |
</parent_id> |
|
| 156 | 161 |
</plantname> |
| 157 | 162 |
</parent_id> |
| 158 | 163 |
</plantname> |
| ... | ... | |
| 162 | 167 |
</plantname> |
| 163 | 168 |
</parent_id> |
| 164 | 169 |
</plantname> |
| 165 |
</parent_id> |
|
| 166 |
</plantname> |
|
| 167 |
</path> |
|
| 168 |
</_simplifyPath> |
|
| 169 |
</plantname_id> |
|
| 170 |
</plantconcept> |
|
| 171 |
</plantconcept_id> |
|
| 172 |
<taxonfit>$cfaff</taxonfit> |
|
| 173 |
</taxondetermination> |
|
| 174 |
<taxondetermination> |
|
| 175 |
<isoriginal>true</isoriginal> |
|
| 176 |
<plantconcept_id> |
|
| 177 |
<plantconcept> |
|
| 178 |
<plantname_id> |
|
| 179 |
<_simplifyPath> |
|
| 180 |
<next>parent_id</next> |
|
| 181 |
<path> |
|
| 182 |
<plantname> |
|
| 183 |
<rank>binomial</rank> |
|
| 184 |
<parent_id> |
|
| 170 |
</path> |
|
| 171 |
</_simplifyPath> |
|
| 172 |
</plantname_id> |
|
| 173 |
</plantconcept> |
|
| 174 |
</plantconcept_id> |
|
| 175 |
<taxonfit>$cfaff</taxonfit> |
|
| 176 |
</taxondetermination> |
|
| 177 |
<taxondetermination> |
|
| 178 |
<isoriginal>true</isoriginal> |
|
| 179 |
<plantconcept_id> |
|
| 180 |
<plantconcept> |
|
| 181 |
<plantname_id> |
|
| 182 |
<_simplifyPath> |
|
| 183 |
<next>parent_id</next> |
|
| 184 |
<path> |
|
| 185 | 185 |
<plantname> |
| 186 |
<rank>authority</rank>
|
|
| 186 |
<rank>binomial</rank>
|
|
| 187 | 187 |
<parent_id> |
| 188 | 188 |
<plantname> |
| 189 |
<rank>subspecies</rank>
|
|
| 189 |
<rank>authority</rank>
|
|
| 190 | 190 |
<parent_id> |
| 191 | 191 |
<plantname> |
| 192 |
<rank>species</rank> |
|
| 193 |
<plantname>$OrigSpecies</plantname> |
|
| 192 |
<rank>subspecies</rank> |
|
| 194 | 193 |
<parent_id> |
| 195 | 194 |
<plantname> |
| 196 |
<rank>genus</rank>
|
|
| 197 |
<plantname>$OrigGenus</plantname>
|
|
| 195 |
<rank>species</rank>
|
|
| 196 |
<plantname>$OrigSpecies</plantname>
|
|
| 198 | 197 |
<parent_id> |
| 199 | 198 |
<plantname> |
| 200 |
<rank>family</rank> |
|
| 201 |
<plantname>$OrigFamily</plantname> |
|
| 199 |
<rank>genus</rank> |
|
| 200 |
<plantname>$OrigGenus</plantname> |
|
| 201 |
<parent_id> |
|
| 202 |
<plantname> |
|
| 203 |
<rank>family</rank> |
|
| 204 |
<plantname>$OrigFamily</plantname> |
|
| 205 |
</plantname> |
|
| 206 |
</parent_id> |
|
| 202 | 207 |
</plantname> |
| 203 | 208 |
</parent_id> |
| 204 | 209 |
</plantname> |
| ... | ... | |
| 208 | 213 |
</plantname> |
| 209 | 214 |
</parent_id> |
| 210 | 215 |
</plantname> |
| 211 |
</parent_id>
|
|
| 212 |
</plantname>
|
|
| 213 |
</path>
|
|
| 214 |
</_simplifyPath>
|
|
| 215 |
</plantname_id>
|
|
| 216 |
</plantconcept>
|
|
| 217 |
</plantconcept_id>
|
|
| 218 |
</taxondetermination>
|
|
| 219 |
<verbatimcollectorname>
|
|
| 220 |
<_name>
|
|
| 221 |
<first>$coll_firstname</first>
|
|
| 222 |
<last>$coll_lastname</last>
|
|
| 223 |
</_name>
|
|
| 224 |
</verbatimcollectorname>
|
|
| 225 |
<voucher>
|
|
| 226 |
<specimenreplicate_id>
|
|
| 227 |
<specimenreplicate>
|
|
| 228 |
<catalognumber_dwc>
|
|
| 229 |
<_if name="if indirect voucher">
|
|
| 230 |
<cond>
|
|
| 231 |
<_eq>
|
|
| 232 |
<right>indirect</right>
|
|
| 233 |
<left>$DetType</left>
|
|
| 234 |
</_eq>
|
|
| 235 |
</cond>
|
|
| 236 |
<then>
|
|
| 237 |
<_alt>
|
|
| 238 |
<1>$coll_number</1>
|
|
| 239 |
<2>$SourceVoucher</2>
|
|
| 240 |
</_alt>
|
|
| 241 |
</then>
|
|
| 242 |
</_if>
|
|
| 243 |
</catalognumber_dwc>
|
|
| 244 |
</specimenreplicate>
|
|
| 245 |
</specimenreplicate_id>
|
|
| 246 |
</voucher>
|
|
| 247 |
</taxonoccurrence>
|
|
| 248 |
</locationevent>
|
|
| 249 |
</location>
|
|
| 216 |
</path>
|
|
| 217 |
</_simplifyPath>
|
|
| 218 |
</plantname_id>
|
|
| 219 |
</plantconcept>
|
|
| 220 |
</plantconcept_id>
|
|
| 221 |
</taxondetermination>
|
|
| 222 |
<verbatimcollectorname>
|
|
| 223 |
<_name>
|
|
| 224 |
<first>$coll_firstname</first>
|
|
| 225 |
<last>$coll_lastname</last>
|
|
| 226 |
</_name>
|
|
| 227 |
</verbatimcollectorname>
|
|
| 228 |
<voucher>
|
|
| 229 |
<specimenreplicate_id>
|
|
| 230 |
<specimenreplicate>
|
|
| 231 |
<catalognumber_dwc>
|
|
| 232 |
<_if name="if indirect voucher">
|
|
| 233 |
<cond>
|
|
| 234 |
<_eq>
|
|
| 235 |
<right>indirect</right>
|
|
| 236 |
<left>$DetType</left>
|
|
| 237 |
</_eq>
|
|
| 238 |
</cond>
|
|
| 239 |
<then>
|
|
| 240 |
<_alt>
|
|
| 241 |
<1>$coll_number</1>
|
|
| 242 |
<2>$SourceVoucher</2>
|
|
| 243 |
</_alt>
|
|
| 244 |
</then>
|
|
| 245 |
</_if>
|
|
| 246 |
</catalognumber_dwc>
|
|
| 247 |
</specimenreplicate>
|
|
| 248 |
</specimenreplicate_id>
|
|
| 249 |
</voucher>
|
|
| 250 |
</taxonoccurrence>
|
|
| 251 |
</locationevent>
|
|
| 252 |
</location>
|
|
| 253 |
</path>
|
|
| 254 |
</_simplifyPath>
|
|
| 250 | 255 |
</VegBIEN> |
| 251 | 256 |
Inserted 42 new rows into database |
| inputs/ARIZ/Specimen/test.xml.ref | ||
|---|---|---|
| 1 | 1 |
Put template: |
| 2 | 2 |
<VegBIEN> |
| 3 |
<location id="-1"> |
|
| 4 |
<authorlocationcode> |
|
| 5 |
<_alt> |
|
| 6 |
<1>$GlobalUniqueIdentifier</1> |
|
| 7 |
<2> |
|
| 8 |
<_join> |
|
| 9 |
<1>$InstitutionCode</1> |
|
| 10 |
<2>$CollectionCode</2> |
|
| 11 |
<3> |
|
| 12 |
<_alt> |
|
| 13 |
<1>$CatalogNumberNumeric</1> |
|
| 14 |
<2>$CatalogNumber</2> |
|
| 15 |
</_alt> |
|
| 16 |
</3> |
|
| 17 |
</_join> |
|
| 18 |
</2> |
|
| 19 |
</_alt> |
|
| 20 |
</authorlocationcode> |
|
| 21 |
<elevation> |
|
| 22 |
<_alt> |
|
| 23 |
<1> |
|
| 24 |
<_replace> |
|
| 25 |
<\bca\.?></\bca\.?> |
|
| 26 |
<value>$VerbatimElevation</value> |
|
| 27 |
</_replace> |
|
| 28 |
</1> |
|
| 29 |
<2> |
|
| 30 |
<_avg> |
|
| 31 |
<max> |
|
| 3 |
<_simplifyPath id="-1"> |
|
| 4 |
<next>parent_id</next> |
|
| 5 |
<path> |
|
| 6 |
<location> |
|
| 7 |
<authorlocationcode> |
|
| 8 |
<_alt> |
|
| 9 |
<1>$GlobalUniqueIdentifier</1> |
|
| 10 |
<2> |
|
| 11 |
<_join> |
|
| 12 |
<1>$InstitutionCode</1> |
|
| 13 |
<2>$CollectionCode</2> |
|
| 14 |
<3> |
|
| 15 |
<_alt> |
|
| 16 |
<1>$CatalogNumberNumeric</1> |
|
| 17 |
<2>$CatalogNumber</2> |
|
| 18 |
</_alt> |
|
| 19 |
</3> |
|
| 20 |
</_join> |
|
| 21 |
</2> |
|
| 22 |
</_alt> |
|
| 23 |
</authorlocationcode> |
|
| 24 |
<elevation> |
|
| 25 |
<_alt> |
|
| 26 |
<1> |
|
| 27 |
<_replace> |
|
| 28 |
<\bca\.?></\bca\.?> |
|
| 29 |
<value>$VerbatimElevation</value> |
|
| 30 |
</_replace> |
|
| 31 |
</1> |
|
| 32 |
<2> |
|
| 33 |
<_avg> |
|
| 34 |
<max> |
|
| 35 |
<_units> |
|
| 36 |
<default>m</default> |
|
| 37 |
<to>m</to> |
|
| 38 |
<to></to> |
|
| 39 |
<value> |
|
| 40 |
<_replace> |
|
| 41 |
<\bca\.?></\bca\.?> |
|
| 42 |
<value>$MaximumElevationInMeters</value> |
|
| 43 |
</_replace> |
|
| 44 |
</value> |
|
| 45 |
</_units> |
|
| 46 |
</max> |
|
| 47 |
<min> |
|
| 48 |
<_units> |
|
| 49 |
<default>m</default> |
|
| 50 |
<to>m</to> |
|
| 51 |
<to></to> |
|
| 52 |
<value> |
|
| 53 |
<_rangeStart> |
|
| 54 |
<value> |
|
| 55 |
<_replace> |
|
| 56 |
<\bca\.?></\bca\.?> |
|
| 57 |
<value>$MinimumElevationInMeters</value> |
|
| 58 |
</_replace> |
|
| 59 |
</value> |
|
| 60 |
</_rangeStart> |
|
| 61 |
</value> |
|
| 62 |
</_units> |
|
| 63 |
</min> |
|
| 64 |
</_avg> |
|
| 65 |
</2> |
|
| 66 |
</_alt> |
|
| 67 |
</elevation> |
|
| 68 |
<elevationrange> |
|
| 69 |
<_range> |
|
| 70 |
<from> |
|
| 32 | 71 |
<_units> |
| 33 | 72 |
<default>m</default> |
| 34 | 73 |
<to>m</to> |
| 35 | 74 |
<to></to> |
| 36 | 75 |
<value> |
| 37 |
<_replace> |
|
| 38 |
<\bca\.?></\bca\.?> |
|
| 39 |
<value>$MaximumElevationInMeters</value> |
|
| 40 |
</_replace> |
|
| 41 |
</value> |
|
| 42 |
</_units> |
|
| 43 |
</max> |
|
| 44 |
<min> |
|
| 45 |
<_units> |
|
| 46 |
<default>m</default> |
|
| 47 |
<to>m</to> |
|
| 48 |
<to></to> |
|
| 49 |
<value> |
|
| 50 | 76 |
<_rangeStart> |
| 51 | 77 |
<value> |
| 52 | 78 |
<_replace> |
| ... | ... | |
| 57 | 83 |
</_rangeStart> |
| 58 | 84 |
</value> |
| 59 | 85 |
</_units> |
| 60 |
</min> |
|
| 61 |
</_avg> |
|
| 62 |
</2> |
|
| 63 |
</_alt> |
|
| 64 |
</elevation> |
|
| 65 |
<elevationrange> |
|
| 66 |
<_range> |
|
| 67 |
<from> |
|
| 68 |
<_units> |
|
| 69 |
<default>m</default> |
|
| 70 |
<to>m</to> |
|
| 71 |
<to></to> |
|
| 72 |
<value> |
|
| 73 |
<_rangeStart> |
|
| 86 |
</from> |
|
| 87 |
<to> |
|
| 88 |
<_units> |
|
| 89 |
<default>m</default> |
|
| 90 |
<to>m</to> |
|
| 91 |
<to></to> |
|
| 74 | 92 |
<value> |
| 75 |
<_replace> |
|
| 76 |
<\bca\.?></\bca\.?> |
|
| 77 |
<value>$MinimumElevationInMeters</value> |
|
| 78 |
</_replace> |
|
| 79 |
</value> |
|
| 80 |
</_rangeStart> |
|
| 81 |
</value> |
|
| 82 |
</_units> |
|
| 83 |
</from> |
|
| 84 |
<to> |
|
| 85 |
<_units> |
|
| 86 |
<default>m</default> |
|
| 87 |
<to>m</to> |
|
| 88 |
<to></to> |
|
| 89 |
<value> |
|
| 90 |
<_alt> |
|
| 91 |
<1> |
|
| 92 |
<_replace> |
|
| 93 |
<\bca\.?></\bca\.?> |
|
| 94 |
<value>$MaximumElevationInMeters</value> |
|
| 95 |
</_replace> |
|
| 96 |
</1> |
|
| 97 |
<2> |
|
| 98 |
<_rangeEnd> |
|
| 99 |
<value> |
|
| 93 |
<_alt> |
|
| 94 |
<1> |
|
| 100 | 95 |
<_replace> |
| 101 | 96 |
<\bca\.?></\bca\.?> |
| 102 |
<value>$MinimumElevationInMeters</value>
|
|
| 97 |
<value>$MaximumElevationInMeters</value>
|
|
| 103 | 98 |
</_replace> |
| 104 |
</value> |
|
| 105 |
</_rangeEnd> |
|
| 106 |
</2> |
|
| 107 |
</_alt> |
|
| 108 |
</value> |
|
| 109 |
</_units> |
|
| 110 |
</to> |
|
| 111 |
</_range> |
|
| 112 |
</elevationrange> |
|
| 113 |
<locationdetermination> |
|
| 114 |
<coordsaccuracy><_noCV><value>$CoordinateUncertaintyInMeters</value></_noCV></coordsaccuracy> |
|
| 115 |
<footprintgeometry_dwc>$BoundingBox</footprintgeometry_dwc> |
|
| 116 |
<latitude> |
|
| 117 |
<_alt> |
|
| 118 |
<1> |
|
| 119 |
<_nullIf> |
|
| 120 |
<null>0</null> |
|
| 121 |
<type>float</type> |
|
| 122 |
<value>$DecimalLatitude</value> |
|
| 123 |
</_nullIf> |
|
| 124 |
</1> |
|
| 125 |
<2> |
|
| 126 |
<_nullIf> |
|
| 127 |
<null>0</null> |
|
| 128 |
<type>float</type> |
|
| 129 |
<value>$VerbatimLatitude</value> |
|
| 130 |
</_nullIf> |
|
| 131 |
</2> |
|
| 132 |
</_alt> |
|
| 133 |
</latitude> |
|
| 134 |
<longitude> |
|
| 135 |
<_alt> |
|
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Added /_simplifyPath:[next=parent_id]/path to root so the returned subplot location will be its parent location if there is no subplot name or ID (indicating that that particular plot did not have subplots). Note that this also causes the parent_id forwarding effect to occur for all other tables containing parent_id, which will help prevent similar issues with subplot events, etc. This will hopefully fix the SALVIAS.plotObservations bug where some organisms did not have a subplot #, causing the subplot location to become NULL and causing the corresponding locationevent rows not to match the locationevent_unique_within_location index filter condition (which requires a parent_id), which caused multiple output table pkeys to be returned for those rows, violating the locationevent_pkeys temp table's primary key.