Revision 4621
Added by Aaron Marcuse-Kubitza almost 12 years ago
| test.xml.ref | ||
|---|---|---|
| 1 | 1 |
Put template: |
| 2 | 2 |
<VegBIEN> |
| 3 |
<location id="-1">
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<authorlocationcode>
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<_alt>
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<1>$id</1>
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<2>
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<_join>
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<1>$institutionCode</1>
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<_simplifyPath id="-1">
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<next>parent_id</next>
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<path>
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<location>
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<authorlocationcode>
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<_alt>
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<1>$id</1>
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| 10 | 10 |
<2> |
| 11 | 11 |
<_join> |
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<1>$collectionCode</1> |
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<2>$collectionID</2> |
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<1>$institutionCode</1> |
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<2> |
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<_join> |
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<1>$collectionCode</1> |
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<2>$collectionID</2> |
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</_join> |
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</2> |
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<3>$catalogNumber</3> |
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| 14 | 20 |
</_join> |
| 15 | 21 |
</2> |
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<3>$catalogNumber</3> |
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</_join> |
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</2> |
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</_alt> |
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</authorlocationcode> |
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<elevation> |
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<_replace> |
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<\bca\.?></\bca\.?> |
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<value>$verbatimElevation</value> |
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</_replace> |
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</elevation> |
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<locationdetermination> |
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<latitude> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$decimalLatitude</value> |
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</_nullIf> |
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</latitude> |
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<longitude> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$decimalLongitude</value> |
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</_nullIf> |
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</longitude> |
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| 42 |
<namedplace_id> |
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<_simplifyPath> |
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<next>parent_id</next> |
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<path> |
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<namedplace> |
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<rank>county</rank> |
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<placename>$county</placename> |
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<parent_id> |
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</_alt> |
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</authorlocationcode> |
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<elevation> |
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<_replace> |
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<\bca\.?></\bca\.?> |
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<value>$verbatimElevation</value> |
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</_replace> |
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</elevation> |
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<locationdetermination> |
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<latitude> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$decimalLatitude</value> |
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</_nullIf> |
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</latitude> |
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<longitude> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$decimalLongitude</value> |
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</_nullIf> |
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</longitude> |
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<namedplace_id> |
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<_simplifyPath> |
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<next>parent_id</next> |
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<path> |
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| 50 | 49 |
<namedplace> |
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<rank>stateProvince</rank>
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<placename>$stateProvince</placename>
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<rank>county</rank>
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<placename>$county</placename>
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| 53 | 52 |
<parent_id> |
| 54 | 53 |
<namedplace> |
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<rank>country</rank>
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<placename>$country</placename>
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<rank>stateProvince</rank>
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<placename>$stateProvince</placename>
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| 57 | 56 |
<parent_id> |
| 58 | 57 |
<namedplace> |
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<rank>continent</rank> |
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<placename>$continent</placename> |
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<rank>country</rank> |
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<placename>$country</placename> |
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<parent_id> |
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<namedplace> |
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<rank>continent</rank> |
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<placename>$continent</placename> |
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</namedplace> |
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</parent_id> |
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| 61 | 66 |
</namedplace> |
| 62 | 67 |
</parent_id> |
| 63 | 68 |
</namedplace> |
| 64 | 69 |
</parent_id> |
| 65 | 70 |
</namedplace> |
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</parent_id> |
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</namedplace> |
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</path> |
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</_simplifyPath> |
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</namedplace_id> |
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</locationdetermination> |
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<locationevent> |
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<obsenddate><_date><date><_dateRangeEnd><value>$eventDate</value></_dateRangeEnd></date></_date></obsenddate> |
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<obsstartdate><_date><date><_dateRangeStart><value>$eventDate</value></_dateRangeStart></date></_date></obsstartdate> |
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<taxonoccurrence> |
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<aggregateoccurrence> |
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<plantobservation> |
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<collectionnumber>$recordNumber</collectionnumber> |
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<specimenreplicate> |
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<catalognumber_dwc>$catalogNumber</catalognumber_dwc> |
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<collectioncode_dwc> |
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<_join> |
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<1>$collectionCode</1> |
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<2>$collectionID</2> |
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</_join> |
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</collectioncode_dwc> |
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<institution_id><party><organizationname>$institutionCode</organizationname></party></institution_id> |
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<sourceaccessioncode>$id</sourceaccessioncode> |
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</specimenreplicate> |
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</plantobservation> |
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</aggregateoccurrence> |
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<authortaxoncode> |
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<_alt> |
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<1>$recordNumber</1> |
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<2>$scientificName</2> |
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</_alt> |
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</authortaxoncode> |
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<taxondetermination> |
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<party_id> |
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<party> |
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<givenname><_namePart><first>$identifiedBy</first></_namePart></givenname> |
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<middlename><_namePart><middle>$identifiedBy</middle></_namePart></middlename> |
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<surname><_namePart><last>$identifiedBy</last></_namePart></surname> |
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</party> |
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</party_id> |
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<plantconcept_id> |
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<plantconcept> |
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<plantname_id> |
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<_simplifyPath> |
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<next>parent_id</next> |
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<path> |
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<plantname> |
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<rank>binomial</rank> |
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<plantname>$scientificName</plantname> |
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<parent_id> |
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</path> |
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</_simplifyPath> |
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</namedplace_id> |
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</locationdetermination> |
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<locationevent> |
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<obsenddate><_date><date><_dateRangeEnd><value>$eventDate</value></_dateRangeEnd></date></_date></obsenddate> |
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<obsstartdate><_date><date><_dateRangeStart><value>$eventDate</value></_dateRangeStart></date></_date></obsstartdate> |
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<taxonoccurrence> |
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<aggregateoccurrence> |
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<plantobservation> |
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<collectionnumber>$recordNumber</collectionnumber> |
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<specimenreplicate> |
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<catalognumber_dwc>$catalogNumber</catalognumber_dwc> |
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<collectioncode_dwc> |
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<_join> |
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<1>$collectionCode</1> |
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<2>$collectionID</2> |
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</_join> |
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</collectioncode_dwc> |
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<institution_id><party><organizationname>$institutionCode</organizationname></party></institution_id> |
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<sourceaccessioncode>$id</sourceaccessioncode> |
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</specimenreplicate> |
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</plantobservation> |
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</aggregateoccurrence> |
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<authortaxoncode> |
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<_alt> |
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<1>$recordNumber</1> |
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<2>$scientificName</2> |
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</_alt> |
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</authortaxoncode> |
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<taxondetermination> |
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<party_id> |
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<party> |
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<givenname><_namePart><first>$identifiedBy</first></_namePart></givenname> |
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<middlename><_namePart><middle>$identifiedBy</middle></_namePart></middlename> |
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<surname><_namePart><last>$identifiedBy</last></_namePart></surname> |
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</party> |
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</party_id> |
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<plantconcept_id> |
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<plantconcept> |
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<plantname_id> |
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<_simplifyPath> |
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<next>parent_id</next> |
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<path> |
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| 116 | 115 |
<plantname> |
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<rank>authority</rank>
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<plantname>$scientificNameAuthorship</plantname>
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<rank>binomial</rank>
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<plantname>$scientificName</plantname> |
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| 119 | 118 |
<parent_id> |
| 120 | 119 |
<plantname> |
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<rank>subspecies</rank> |
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<plantname> |
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<_name> |
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<first>$taxonRank</first> |
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<last>$infraspecificEpithet</last> |
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</_name> |
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</plantname> |
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<rank>authority</rank> |
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<plantname>$scientificNameAuthorship</plantname> |
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| 128 | 122 |
<parent_id> |
| 129 | 123 |
<plantname> |
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<rank>species</rank> |
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<plantname>$specificEpithet</plantname> |
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<rank>subspecies</rank> |
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<plantname> |
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<_name> |
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<first>$taxonRank</first> |
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<last>$infraspecificEpithet</last> |
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| 129 |
</_name> |
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| 130 |
</plantname> |
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| 132 | 131 |
<parent_id> |
| 133 | 132 |
<plantname> |
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<rank>genus</rank>
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<plantname>$genus</plantname>
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<rank>species</rank>
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<plantname>$specificEpithet</plantname>
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| 136 | 135 |
<parent_id> |
| 137 | 136 |
<plantname> |
| 138 |
<rank>family</rank>
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<plantname>$family</plantname>
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<rank>genus</rank>
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<plantname>$genus</plantname>
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| 140 | 139 |
<parent_id> |
| 141 | 140 |
<plantname> |
| 142 |
<rank>order</rank>
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<plantname>$order</plantname>
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<rank>family</rank>
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<plantname>$family</plantname>
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| 144 | 143 |
<parent_id> |
| 145 | 144 |
<plantname> |
| 146 |
<rank>class</rank>
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<plantname>$class</plantname>
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<rank>order</rank>
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<plantname>$order</plantname>
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| 148 | 147 |
<parent_id> |
| 149 | 148 |
<plantname> |
| 150 |
<rank>subkingdom</rank>
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<plantname>$phylum</plantname>
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| 149 |
<rank>class</rank>
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| 150 |
<plantname>$class</plantname>
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| 152 | 151 |
<parent_id> |
| 153 | 152 |
<plantname> |
| 154 |
<rank>kingdom</rank> |
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<plantname>$kingdom</plantname> |
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| 153 |
<rank>subkingdom</rank> |
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| 154 |
<plantname>$phylum</plantname> |
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| 155 |
<parent_id> |
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<plantname> |
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<rank>kingdom</rank> |
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<plantname>$kingdom</plantname> |
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</plantname> |
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</parent_id> |
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| 156 | 161 |
</plantname> |
| 157 | 162 |
</parent_id> |
| 158 | 163 |
</plantname> |
| ... | ... | |
| 170 | 175 |
</plantname> |
| 171 | 176 |
</parent_id> |
| 172 | 177 |
</plantname> |
| 173 |
</parent_id>
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</plantname>
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</path>
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</_simplifyPath>
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</plantname_id>
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</plantconcept>
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| 179 |
</plantconcept_id>
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<determinationdate><_date><date><_dateRangeStart><value>$dateIdentified</value></_dateRangeStart></date></_date></determinationdate>
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| 181 |
</taxondetermination>
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| 182 |
<verbatimcollectorname>$recordedBy</verbatimcollectorname>
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| 183 |
</taxonoccurrence>
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| 184 |
</locationevent>
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| 185 |
<locationnarrative>
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| 186 |
<_merge>
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| 187 |
<1>$locality</1>
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| 188 |
<3>
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| 189 |
<_label>
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| 190 |
<label>habitat</label>
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<value>$habitat</value>
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|
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</_label>
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| 193 |
</3>
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</_merge>
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</locationnarrative>
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</location>
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|
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</path>
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</_simplifyPath>
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| 180 |
</plantname_id>
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| 181 |
</plantconcept>
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| 182 |
</plantconcept_id>
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| 183 |
<determinationdate><_date><date><_dateRangeStart><value>$dateIdentified</value></_dateRangeStart></date></_date></determinationdate>
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|
| 184 |
</taxondetermination>
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| 185 |
<verbatimcollectorname>$recordedBy</verbatimcollectorname>
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| 186 |
</taxonoccurrence>
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| 187 |
</locationevent>
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| 188 |
<locationnarrative>
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| 189 |
<_merge>
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| 190 |
<1>$locality</1>
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| 191 |
<3>
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| 192 |
<_label>
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<label>habitat</label>
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| 194 |
<value>$habitat</value>
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|
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</_label>
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|
| 196 |
</3>
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| 197 |
</_merge>
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| 198 |
</locationnarrative>
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|
| 199 |
</location>
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| 200 |
</path>
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| 201 |
</_simplifyPath>
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| 197 | 202 |
</VegBIEN> |
| 198 | 203 |
Inserted 39 new rows into database |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Added /_simplifyPath:[next=parent_id]/path to root so the returned subplot location will be its parent location if there is no subplot name or ID (indicating that that particular plot did not have subplots). Note that this also causes the parent_id forwarding effect to occur for all other tables containing parent_id, which will help prevent similar issues with subplot events, etc. This will hopefully fix the SALVIAS.plotObservations bug where some organisms did not have a subplot #, causing the subplot location to become NULL and causing the corresponding locationevent rows not to match the locationevent_unique_within_location index filter condition (which requires a parent_id), which caused multiple output table pkeys to be returned for those rows, violating the locationevent_pkeys temp table's primary key.