Revision 4621
Added by Aaron Marcuse-Kubitza almost 12 years ago
test.xml.ref | ||
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1 | 1 |
Put template: |
2 | 2 |
<VegBIEN> |
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<location id="-1"> |
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<authorlocationcode> |
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<_alt> |
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<1>$GlobalUniqueIdentifier</1> |
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<2> |
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<_join> |
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<1>$InstitutionCode</1> |
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<2>$CollectionCode</2> |
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<3> |
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<_alt> |
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<1>$CatalogNumberNumeric</1> |
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<2>$CatalogNumber</2> |
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</_alt> |
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</3> |
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</_join> |
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</2> |
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</_alt> |
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</authorlocationcode> |
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<elevation> |
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<_alt> |
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<1> |
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<_replace> |
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<\bca\.?></\bca\.?> |
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<value>$VerbatimElevation</value> |
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</_replace> |
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</1> |
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<2> |
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<_avg> |
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<max> |
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<_simplifyPath id="-1"> |
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<next>parent_id</next> |
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<path> |
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<location> |
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<authorlocationcode> |
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<_alt> |
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<1>$GlobalUniqueIdentifier</1> |
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<2> |
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<_join> |
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<1>$InstitutionCode</1> |
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<2>$CollectionCode</2> |
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<3> |
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<_alt> |
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<1>$CatalogNumberNumeric</1> |
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<2>$CatalogNumber</2> |
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</_alt> |
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</3> |
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</_join> |
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</2> |
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</_alt> |
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</authorlocationcode> |
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<elevation> |
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<_alt> |
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<1> |
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<_replace> |
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<\bca\.?></\bca\.?> |
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<value>$VerbatimElevation</value> |
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</_replace> |
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</1> |
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<2> |
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<_avg> |
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<max> |
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<_units> |
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<default>m</default> |
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<to>m</to> |
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<to></to> |
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<value> |
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<_replace> |
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<\bca\.?></\bca\.?> |
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<value>$MaximumElevationInMeters</value> |
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</_replace> |
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</value> |
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</_units> |
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</max> |
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<min> |
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<_units> |
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<default>m</default> |
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<to>m</to> |
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<to></to> |
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<value> |
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<_rangeStart> |
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<value> |
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<_replace> |
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<\bca\.?></\bca\.?> |
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<value>$MinimumElevationInMeters</value> |
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</_replace> |
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</value> |
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</_rangeStart> |
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</value> |
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</_units> |
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</min> |
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</_avg> |
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</2> |
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</_alt> |
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</elevation> |
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<elevationrange> |
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<_range> |
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<from> |
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<_units> |
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<default>m</default> |
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<to>m</to> |
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<to></to> |
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<value> |
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<_replace> |
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<\bca\.?></\bca\.?> |
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<value>$MaximumElevationInMeters</value> |
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</_replace> |
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</value> |
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</_units> |
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</max> |
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<min> |
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<_units> |
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<default>m</default> |
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<to>m</to> |
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<to></to> |
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<value> |
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<_rangeStart> |
51 | 77 |
<value> |
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<_replace> |
... | ... | |
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</_rangeStart> |
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</value> |
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</_units> |
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</min> |
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</_avg> |
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</2> |
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</_alt> |
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</elevation> |
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<elevationrange> |
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<_range> |
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<from> |
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<_units> |
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<default>m</default> |
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<to>m</to> |
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<to></to> |
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<value> |
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<_rangeStart> |
|
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</from> |
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<to> |
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<_units> |
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<default>m</default> |
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<to>m</to> |
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<to></to> |
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<value> |
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<_replace> |
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<\bca\.?></\bca\.?> |
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<value>$MinimumElevationInMeters</value> |
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</_replace> |
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</value> |
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</_rangeStart> |
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</value> |
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</_units> |
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</from> |
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<to> |
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<_units> |
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<default>m</default> |
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<to>m</to> |
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<to></to> |
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<value> |
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<_alt> |
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<1> |
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<_replace> |
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<\bca\.?></\bca\.?> |
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<value>$MaximumElevationInMeters</value> |
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</_replace> |
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</1> |
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<2> |
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<_rangeEnd> |
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<value> |
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<_alt> |
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<1> |
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100 | 95 |
<_replace> |
101 | 96 |
<\bca\.?></\bca\.?> |
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<value>$MinimumElevationInMeters</value>
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<value>$MaximumElevationInMeters</value>
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103 | 98 |
</_replace> |
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</value> |
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</_rangeEnd> |
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</2> |
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</_alt> |
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</value> |
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</_units> |
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</to> |
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</_range> |
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</elevationrange> |
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<locationdetermination> |
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<coordsaccuracy><_noCV><value>$CoordinateUncertaintyInMeters</value></_noCV></coordsaccuracy> |
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<footprintgeometry_dwc>$BoundingBox</footprintgeometry_dwc> |
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<latitude> |
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<_alt> |
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<1> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$DecimalLatitude</value> |
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</_nullIf> |
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</1> |
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<2> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$VerbatimLatitude</value> |
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</_nullIf> |
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</2> |
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</_alt> |
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</latitude> |
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<longitude> |
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<_alt> |
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<1> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$DecimalLongitude</value> |
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</_nullIf> |
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</1> |
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<2> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$VerbatimLongitude</value> |
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</_nullIf> |
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</2> |
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</_alt> |
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</longitude> |
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<namedplace_id> |
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<_simplifyPath> |
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<next>parent_id</next> |
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<path> |
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<namedplace> |
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<rank>county</rank> |
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<placename>$County</placename> |
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<parent_id> |
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</1> |
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<2> |
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<_rangeEnd> |
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<value> |
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<_replace> |
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<\bca\.?></\bca\.?> |
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<value>$MinimumElevationInMeters</value> |
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</_replace> |
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</value> |
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</_rangeEnd> |
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</2> |
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</_alt> |
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</value> |
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</_units> |
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</to> |
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</_range> |
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</elevationrange> |
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<locationdetermination> |
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<coordsaccuracy><_noCV><value>$CoordinateUncertaintyInMeters</value></_noCV></coordsaccuracy> |
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<footprintgeometry_dwc>$BoundingBox</footprintgeometry_dwc> |
|
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<latitude> |
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<_alt> |
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<1> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$DecimalLatitude</value> |
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</_nullIf> |
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</1> |
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<2> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$VerbatimLatitude</value> |
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</_nullIf> |
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</2> |
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</_alt> |
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</latitude> |
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<longitude> |
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<_alt> |
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<1> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$DecimalLongitude</value> |
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</_nullIf> |
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</1> |
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<2> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$VerbatimLongitude</value> |
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</_nullIf> |
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</2> |
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</_alt> |
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</longitude> |
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<namedplace_id> |
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<_simplifyPath> |
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<next>parent_id</next> |
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<path> |
|
160 | 159 |
<namedplace> |
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<rank>stateProvince</rank>
|
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<placename>$StateProvince</placename>
|
|
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<rank>county</rank>
|
|
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<placename>$County</placename>
|
|
163 | 162 |
<parent_id> |
164 | 163 |
<namedplace> |
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<rank>country</rank>
|
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<placename>$Country</placename>
|
|
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<rank>stateProvince</rank>
|
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<placename>$StateProvince</placename>
|
|
167 | 166 |
<parent_id> |
168 | 167 |
<namedplace> |
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<rank>continent</rank> |
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<placename>$ContinentOcean</placename> |
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<rank>country</rank> |
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<placename>$Country</placename> |
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<parent_id> |
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<namedplace> |
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<rank>continent</rank> |
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<placename>$ContinentOcean</placename> |
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</namedplace> |
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</parent_id> |
|
171 | 176 |
</namedplace> |
172 | 177 |
</parent_id> |
173 | 178 |
</namedplace> |
174 | 179 |
</parent_id> |
175 | 180 |
</namedplace> |
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</parent_id> |
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</namedplace> |
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</path> |
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</_simplifyPath> |
|
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</namedplace_id> |
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</locationdetermination> |
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<locationevent> |
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<taxonoccurrence> |
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<aggregateoccurrence> |
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185 |
<collectiondate> |
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<_alt> |
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<1><_date><date>$VerbatimCollectingDate</date></_date></1> |
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<2> |
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<_date> |
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<day> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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194 |
<value>$DayCollected</value> |
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</_nullIf> |
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</day> |
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<month> |
|
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<_nullIf> |
|
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<null>0</null> |
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<type>float</type> |
|
201 |
<value>$MonthCollected</value> |
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</_nullIf> |
|
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</month> |
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<year> |
|
205 |
<_nullIf> |
|
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<null>0</null> |
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<type>float</type> |
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<value>$YearCollected</value> |
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</_nullIf> |
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</year> |
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</_date> |
|
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</2> |
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</_alt> |
|
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</collectiondate> |
|
215 |
<count>$IndividualCount</count> |
|
216 |
<notes>$FieldNotes</notes> |
|
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<plantobservation> |
|
218 |
<collectionnumber>$CollectorNumber</collectionnumber> |
|
219 |
<definedvalue fkey="tablerecord_id"> |
|
220 |
<userdefined_id> |
|
221 |
<userdefined> |
|
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<tablename>plantobservation</tablename> |
|
223 |
<userdefinedname>sex</userdefinedname> |
|
224 |
</userdefined> |
|
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</userdefined_id> |
|
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<definedvalue>$Sex</definedvalue> |
|
227 |
</definedvalue> |
|
228 |
<specimenreplicate> |
|
229 |
<catalognumber_dwc> |
|
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</path> |
|
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</_simplifyPath> |
|
183 |
</namedplace_id> |
|
184 |
</locationdetermination> |
|
185 |
<locationevent> |
|
186 |
<taxonoccurrence> |
|
187 |
<aggregateoccurrence> |
|
188 |
<collectiondate> |
|
230 | 189 |
<_alt> |
231 |
<1>$CatalogNumberNumeric</1> |
|
232 |
<2>$CatalogNumber</2> |
|
190 |
<1><_date><date>$VerbatimCollectingDate</date></_date></1> |
|
191 |
<2> |
|
192 |
<_date> |
|
193 |
<day> |
|
194 |
<_nullIf> |
|
195 |
<null>0</null> |
|
196 |
<type>float</type> |
|
197 |
<value>$DayCollected</value> |
|
198 |
</_nullIf> |
|
199 |
</day> |
|
200 |
<month> |
|
201 |
<_nullIf> |
|
202 |
<null>0</null> |
|
203 |
<type>float</type> |
|
204 |
<value>$MonthCollected</value> |
|
205 |
</_nullIf> |
|
206 |
</month> |
|
207 |
<year> |
|
208 |
<_nullIf> |
|
209 |
<null>0</null> |
|
210 |
<type>float</type> |
|
211 |
<value>$YearCollected</value> |
|
212 |
</_nullIf> |
|
213 |
</year> |
|
214 |
</_date> |
|
215 |
</2> |
|
233 | 216 |
</_alt> |
234 |
</catalognumber_dwc> |
|
235 |
<collectioncode_dwc>$CollectionCode</collectioncode_dwc> |
|
236 |
<institution_id><party><organizationname>$InstitutionCode</organizationname></party></institution_id> |
|
237 |
<sourceaccessioncode>$GlobalUniqueIdentifier</sourceaccessioncode> |
|
238 |
</specimenreplicate> |
|
239 |
</plantobservation> |
|
240 |
</aggregateoccurrence> |
|
241 |
<authortaxoncode> |
|
242 |
<_alt> |
|
243 |
<1>$CollectorNumber</1> |
|
244 |
<2> |
|
217 |
</collectiondate> |
|
218 |
<count>$IndividualCount</count> |
|
219 |
<notes>$FieldNotes</notes> |
|
220 |
<plantobservation> |
|
221 |
<collectionnumber>$CollectorNumber</collectionnumber> |
|
222 |
<definedvalue fkey="tablerecord_id"> |
|
223 |
<userdefined_id> |
|
224 |
<userdefined> |
|
225 |
<tablename>plantobservation</tablename> |
|
226 |
<userdefinedname>sex</userdefinedname> |
|
227 |
</userdefined> |
|
228 |
</userdefined_id> |
|
229 |
<definedvalue>$Sex</definedvalue> |
|
230 |
</definedvalue> |
|
231 |
<specimenreplicate> |
|
232 |
<catalognumber_dwc> |
|
233 |
<_alt> |
|
234 |
<1>$CatalogNumberNumeric</1> |
|
235 |
<2>$CatalogNumber</2> |
|
236 |
</_alt> |
|
237 |
</catalognumber_dwc> |
|
238 |
<collectioncode_dwc>$CollectionCode</collectioncode_dwc> |
|
239 |
<institution_id><party><organizationname>$InstitutionCode</organizationname></party></institution_id> |
|
240 |
<sourceaccessioncode>$GlobalUniqueIdentifier</sourceaccessioncode> |
|
241 |
</specimenreplicate> |
|
242 |
</plantobservation> |
|
243 |
</aggregateoccurrence> |
|
244 |
<authortaxoncode> |
|
245 | 245 |
<_alt> |
246 |
<1>$ScientificNameAuthor</1> |
|
247 |
<2>$ScientificName</2> |
|
246 |
<1>$CollectorNumber</1> |
|
247 |
<2> |
|
248 |
<_alt> |
|
249 |
<1>$ScientificNameAuthor</1> |
|
250 |
<2>$ScientificName</2> |
|
251 |
</_alt> |
|
252 |
</2> |
|
248 | 253 |
</_alt> |
249 |
</2> |
|
250 |
</_alt> |
|
251 |
</authortaxoncode> |
|
252 |
<taxondetermination> |
|
253 |
<party_id> |
|
254 |
<party> |
|
255 |
<givenname><_namePart><first>$IdentifiedBy</first></_namePart></givenname> |
|
256 |
<middlename><_namePart><middle>$IdentifiedBy</middle></_namePart></middlename> |
|
257 |
<surname><_namePart><last>$IdentifiedBy</last></_namePart></surname> |
|
258 |
</party> |
|
259 |
</party_id> |
|
260 |
<plantconcept_id> |
|
261 |
<plantconcept> |
|
262 |
<plantname_id> |
|
263 |
<_simplifyPath> |
|
264 |
<next>parent_id</next> |
|
265 |
<path> |
|
266 |
<plantname> |
|
267 |
<rank>binomial</rank> |
|
268 |
<plantname> |
|
269 |
<_alt> |
|
270 |
<1>$ScientificNameAuthor</1> |
|
271 |
<2>$ScientificName</2> |
|
272 |
</_alt> |
|
273 |
</plantname> |
|
274 |
<parent_id> |
|
254 |
</authortaxoncode> |
|
255 |
<taxondetermination> |
|
256 |
<party_id> |
|
257 |
<party> |
|
258 |
<givenname><_namePart><first>$IdentifiedBy</first></_namePart></givenname> |
|
259 |
<middlename><_namePart><middle>$IdentifiedBy</middle></_namePart></middlename> |
|
260 |
<surname><_namePart><last>$IdentifiedBy</last></_namePart></surname> |
|
261 |
</party> |
|
262 |
</party_id> |
|
263 |
<plantconcept_id> |
|
264 |
<plantconcept> |
|
265 |
<plantname_id> |
|
266 |
<_simplifyPath> |
|
267 |
<next>parent_id</next> |
|
268 |
<path> |
|
275 | 269 |
<plantname> |
276 |
<rank>authority</rank> |
|
270 |
<rank>binomial</rank> |
|
271 |
<plantname> |
|
272 |
<_alt> |
|
273 |
<1>$ScientificNameAuthor</1> |
|
274 |
<2>$ScientificName</2> |
|
275 |
</_alt> |
|
276 |
</plantname> |
|
277 | 277 |
<parent_id> |
278 | 278 |
<plantname> |
279 |
<rank>subspecies</rank> |
|
280 |
<plantname>$Subspecies</plantname> |
|
279 |
<rank>authority</rank> |
|
281 | 280 |
<parent_id> |
282 | 281 |
<plantname> |
283 |
<rank>species</rank> |
|
284 |
<plantname>$Species</plantname> |
|
282 |
<rank>subspecies</rank>
|
|
283 |
<plantname>$Subspecies</plantname>
|
|
285 | 284 |
<parent_id> |
286 | 285 |
<plantname> |
287 |
<rank>genus</rank>
|
|
288 |
<plantname>$Genus</plantname>
|
|
286 |
<rank>species</rank>
|
|
287 |
<plantname>$Species</plantname>
|
|
289 | 288 |
<parent_id> |
290 | 289 |
<plantname> |
291 |
<rank>family</rank>
|
|
292 |
<plantname>$Family</plantname>
|
|
290 |
<rank>genus</rank>
|
|
291 |
<plantname>$Genus</plantname>
|
|
293 | 292 |
<parent_id> |
294 | 293 |
<plantname> |
295 |
<rank>order</rank>
|
|
296 |
<plantname>$Order</plantname>
|
|
294 |
<rank>family</rank>
|
|
295 |
<plantname>$Family</plantname>
|
|
297 | 296 |
<parent_id> |
298 | 297 |
<plantname> |
299 |
<rank>class</rank>
|
|
300 |
<plantname>$Class</plantname>
|
|
298 |
<rank>order</rank>
|
|
299 |
<plantname>$Order</plantname>
|
|
301 | 300 |
<parent_id> |
302 | 301 |
<plantname> |
303 |
<rank>subkingdom</rank>
|
|
304 |
<plantname>$Phylum</plantname>
|
|
302 |
<rank>class</rank>
|
|
303 |
<plantname>$Class</plantname>
|
|
305 | 304 |
<parent_id> |
306 | 305 |
<plantname> |
307 |
<rank>kingdom</rank> |
|
308 |
<plantname>$Kingdom</plantname> |
|
306 |
<rank>subkingdom</rank> |
|
307 |
<plantname>$Phylum</plantname> |
|
308 |
<parent_id> |
|
309 |
<plantname> |
|
310 |
<rank>kingdom</rank> |
|
311 |
<plantname>$Kingdom</plantname> |
|
312 |
</plantname> |
|
313 |
</parent_id> |
|
309 | 314 |
</plantname> |
310 | 315 |
</parent_id> |
311 | 316 |
</plantname> |
... | ... | |
323 | 328 |
</plantname> |
324 | 329 |
</parent_id> |
325 | 330 |
</plantname> |
326 |
</parent_id>
|
|
327 |
</plantname>
|
|
328 |
</path>
|
|
329 |
</_simplifyPath>
|
|
330 |
</plantname_id>
|
|
331 |
</plantconcept>
|
|
332 |
</plantconcept_id>
|
|
333 |
<determinationdate>
|
|
334 |
<_date>
|
|
335 |
<day>
|
|
336 |
<_nullIf>
|
|
337 |
<null>0</null>
|
|
338 |
<type>float</type>
|
|
339 |
<value>$DayIdentified</value>
|
|
340 |
</_nullIf>
|
|
341 |
</day>
|
|
342 |
<month>
|
|
343 |
<_nullIf>
|
|
344 |
<null>0</null>
|
|
345 |
<type>float</type>
|
|
346 |
<value>$MonthIdentified</value>
|
|
347 |
</_nullIf>
|
|
348 |
</month>
|
|
349 |
<year>
|
|
350 |
<_nullIf>
|
|
351 |
<null>0</null>
|
|
352 |
<type>float</type>
|
|
353 |
<value>$YearIdentified</value>
|
|
354 |
</_nullIf>
|
|
355 |
</year>
|
|
356 |
</_date>
|
|
357 |
</determinationdate>
|
|
358 |
<notes>$Remarks</notes>
|
|
359 |
<taxonfit>$IdentificationModifier</taxonfit>
|
|
360 |
</taxondetermination>
|
|
361 |
<verbatimcollectorname>$Collector</verbatimcollectorname>
|
|
362 |
</taxonoccurrence>
|
|
363 |
<waterdepth>
|
|
364 |
<_avg>
|
|
365 |
<max>
|
|
366 |
<_units>
|
|
367 |
<default>m</default>
|
|
368 |
<to>m</to>
|
|
369 |
<to></to>
|
|
370 |
<value>
|
|
371 |
<_replace>
|
|
372 |
<\bca\.?></\bca\.?>
|
|
373 |
<value>$MaximumDepthInMeters</value>
|
|
374 |
</_replace>
|
|
375 |
</value>
|
|
376 |
</_units>
|
|
377 |
</max>
|
|
378 |
<min>
|
|
379 |
<_units>
|
|
380 |
<default>m</default>
|
|
381 |
<to>m</to>
|
|
382 |
<to></to>
|
|
383 |
<value>
|
|
384 |
<_replace>
|
|
385 |
<\bca\.?></\bca\.?>
|
|
386 |
<value>$MinimumDepthInMeters</value>
|
|
387 |
</_replace>
|
|
388 |
</value>
|
|
389 |
</_units>
|
|
390 |
</min>
|
|
391 |
</_avg>
|
|
392 |
</waterdepth>
|
|
393 |
</locationevent>
|
|
394 |
<locationnarrative>$Locality</locationnarrative>
|
|
395 |
</location>
|
|
331 |
</path>
|
|
332 |
</_simplifyPath>
|
|
333 |
</plantname_id>
|
|
334 |
</plantconcept>
|
|
335 |
</plantconcept_id>
|
|
336 |
<determinationdate>
|
|
337 |
<_date>
|
|
338 |
<day>
|
|
339 |
<_nullIf>
|
|
340 |
<null>0</null>
|
|
341 |
<type>float</type>
|
|
342 |
<value>$DayIdentified</value>
|
|
343 |
</_nullIf>
|
|
344 |
</day>
|
|
345 |
<month>
|
|
346 |
<_nullIf>
|
|
347 |
<null>0</null>
|
|
348 |
<type>float</type>
|
|
349 |
<value>$MonthIdentified</value>
|
|
350 |
</_nullIf>
|
|
351 |
</month>
|
|
352 |
<year>
|
|
353 |
<_nullIf>
|
|
354 |
<null>0</null>
|
|
355 |
<type>float</type>
|
|
356 |
<value>$YearIdentified</value>
|
|
357 |
</_nullIf>
|
|
358 |
</year>
|
|
359 |
</_date>
|
|
360 |
</determinationdate>
|
|
361 |
<notes>$Remarks</notes>
|
|
362 |
<taxonfit>$IdentificationModifier</taxonfit>
|
|
363 |
</taxondetermination>
|
|
364 |
<verbatimcollectorname>$Collector</verbatimcollectorname>
|
|
365 |
</taxonoccurrence>
|
|
366 |
<waterdepth>
|
|
367 |
<_avg>
|
|
368 |
<max>
|
|
369 |
<_units>
|
|
370 |
<default>m</default>
|
|
371 |
<to>m</to>
|
|
372 |
<to></to>
|
|
373 |
<value>
|
|
374 |
<_replace>
|
|
375 |
<\bca\.?></\bca\.?>
|
|
376 |
<value>$MaximumDepthInMeters</value>
|
|
377 |
</_replace>
|
|
378 |
</value> |
|
379 |
</_units>
|
|
380 |
</max>
|
|
381 |
<min>
|
|
382 |
<_units>
|
|
383 |
<default>m</default>
|
|
384 |
<to>m</to>
|
|
385 |
<to></to>
|
|
386 |
<value>
|
|
387 |
<_replace>
|
|
388 |
<\bca\.?></\bca\.?>
|
|
389 |
<value>$MinimumDepthInMeters</value>
|
|
390 |
</_replace>
|
|
391 |
</value> |
|
392 |
</_units>
|
|
393 |
</min>
|
|
394 |
</_avg>
|
|
395 |
</waterdepth>
|
|
396 |
</locationevent>
|
|
397 |
<locationnarrative>$Locality</locationnarrative>
|
|
398 |
</location>
|
|
399 |
</path>
|
|
400 |
</_simplifyPath>
|
|
396 | 401 |
</VegBIEN> |
397 | 402 |
Inserted 38 new rows into database |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Added /_simplifyPath:[next=parent_id]/path to root so the returned subplot location will be its parent location if there is no subplot name or ID (indicating that that particular plot did not have subplots). Note that this also causes the parent_id forwarding effect to occur for all other tables containing parent_id, which will help prevent similar issues with subplot events, etc. This will hopefully fix the SALVIAS.plotObservations bug where some organisms did not have a subplot #, causing the subplot location to become NULL and causing the corresponding locationevent rows not to match the locationevent_unique_within_location index filter condition (which requires a parent_id), which caused multiple output table pkeys to be returned for those rows, violating the locationevent_pkeys temp table's primary key.