Revision 4621
Added by Aaron Marcuse-Kubitza almost 12 years ago
| test.xml.ref | ||
|---|---|---|
| 1 | 1 |
Put template: |
| 2 | 2 |
<VegBIEN> |
| 3 |
<location id="-1"> |
|
| 4 |
<authorlocationcode> |
|
| 5 |
<_join> |
|
| 6 |
<1>$InstitutionCD</1> |
|
| 7 |
<2>$CollectionCD</2> |
|
| 8 |
<3>$CatalogNO</3> |
|
| 9 |
</_join> |
|
| 10 |
</authorlocationcode> |
|
| 11 |
<elevation> |
|
| 12 |
<_avg> |
|
| 13 |
<max> |
|
| 14 |
<_units> |
|
| 15 |
<default>m</default> |
|
| 16 |
<to>m</to> |
|
| 17 |
<to></to> |
|
| 18 |
<value> |
|
| 19 |
<_replace> |
|
| 20 |
<\bca\.?></\bca\.?> |
|
| 21 |
<value>$MaximumElevationInMeter</value> |
|
| 22 |
</_replace> |
|
| 23 |
</value> |
|
| 24 |
</_units> |
|
| 25 |
</max> |
|
| 26 |
<min> |
|
| 27 |
<_units> |
|
| 28 |
<default>m</default> |
|
| 29 |
<to>m</to> |
|
| 30 |
<to></to> |
|
| 31 |
<value> |
|
| 32 |
<_rangeStart> |
|
| 3 |
<_simplifyPath id="-1"> |
|
| 4 |
<next>parent_id</next> |
|
| 5 |
<path> |
|
| 6 |
<location> |
|
| 7 |
<authorlocationcode> |
|
| 8 |
<_join> |
|
| 9 |
<1>$InstitutionCD</1> |
|
| 10 |
<2>$CollectionCD</2> |
|
| 11 |
<3>$CatalogNO</3> |
|
| 12 |
</_join> |
|
| 13 |
</authorlocationcode> |
|
| 14 |
<elevation> |
|
| 15 |
<_avg> |
|
| 16 |
<max> |
|
| 17 |
<_units> |
|
| 18 |
<default>m</default> |
|
| 19 |
<to>m</to> |
|
| 20 |
<to></to> |
|
| 33 | 21 |
<value> |
| 34 | 22 |
<_replace> |
| 35 | 23 |
<\bca\.?></\bca\.?> |
| 36 |
<value>$MinimumElevationInMeter</value>
|
|
| 24 |
<value>$MaximumElevationInMeter</value>
|
|
| 37 | 25 |
</_replace> |
| 38 | 26 |
</value> |
| 39 |
</_rangeStart> |
|
| 40 |
</value> |
|
| 41 |
</_units> |
|
| 42 |
</min> |
|
| 43 |
</_avg> |
|
| 44 |
</elevation> |
|
| 45 |
<elevationrange> |
|
| 46 |
<_range> |
|
| 47 |
<from> |
|
| 48 |
<_units> |
|
| 49 |
<default>m</default> |
|
| 50 |
<to>m</to> |
|
| 51 |
<to></to> |
|
| 52 |
<value> |
|
| 53 |
<_rangeStart> |
|
| 27 |
</_units> |
|
| 28 |
</max> |
|
| 29 |
<min> |
|
| 30 |
<_units> |
|
| 31 |
<default>m</default> |
|
| 32 |
<to>m</to> |
|
| 33 |
<to></to> |
|
| 54 | 34 |
<value> |
| 55 |
<_replace> |
|
| 56 |
<\bca\.?></\bca\.?> |
|
| 57 |
<value>$MinimumElevationInMeter</value> |
|
| 58 |
</_replace> |
|
| 35 |
<_rangeStart> |
|
| 36 |
<value> |
|
| 37 |
<_replace> |
|
| 38 |
<\bca\.?></\bca\.?> |
|
| 39 |
<value>$MinimumElevationInMeter</value> |
|
| 40 |
</_replace> |
|
| 41 |
</value> |
|
| 42 |
</_rangeStart> |
|
| 59 | 43 |
</value> |
| 60 |
</_rangeStart> |
|
| 61 |
</value> |
|
| 62 |
</_units> |
|
| 63 |
</from> |
|
| 64 |
<to> |
|
| 65 |
<_units> |
|
| 66 |
<default>m</default> |
|
| 67 |
<to>m</to> |
|
| 68 |
<to></to> |
|
| 69 |
<value> |
|
| 70 |
<_alt> |
|
| 71 |
<1> |
|
| 72 |
<_replace> |
|
| 73 |
<\bca\.?></\bca\.?> |
|
| 74 |
<value>$MaximumElevationInMeter</value> |
|
| 75 |
</_replace> |
|
| 76 |
</1> |
|
| 77 |
<2> |
|
| 78 |
<_rangeEnd> |
|
| 44 |
</_units> |
|
| 45 |
</min> |
|
| 46 |
</_avg> |
|
| 47 |
</elevation> |
|
| 48 |
<elevationrange> |
|
| 49 |
<_range> |
|
| 50 |
<from> |
|
| 51 |
<_units> |
|
| 52 |
<default>m</default> |
|
| 53 |
<to>m</to> |
|
| 54 |
<to></to> |
|
| 55 |
<value> |
|
| 56 |
<_rangeStart> |
|
| 79 | 57 |
<value> |
| 80 | 58 |
<_replace> |
| 81 | 59 |
<\bca\.?></\bca\.?> |
| 82 | 60 |
<value>$MinimumElevationInMeter</value> |
| 83 | 61 |
</_replace> |
| 84 | 62 |
</value> |
| 85 |
</_rangeEnd> |
|
| 86 |
</2> |
|
| 87 |
</_alt> |
|
| 88 |
</value> |
|
| 89 |
</_units> |
|
| 90 |
</to> |
|
| 91 |
</_range> |
|
| 92 |
</elevationrange> |
|
| 93 |
<locationdetermination> |
|
| 94 |
<latitude> |
|
| 95 |
<_alt> |
|
| 96 |
<1> |
|
| 97 |
<_nullIf> |
|
| 98 |
<null>0</null> |
|
| 99 |
<type>float</type> |
|
| 100 |
<value>$DecimalLatitude</value> |
|
| 101 |
</_nullIf> |
|
| 102 |
</1> |
|
| 103 |
<2> |
|
| 104 |
<_nullIf> |
|
| 105 |
<null>0</null> |
|
| 106 |
<type>float</type> |
|
| 107 |
<value>$VerbatimLatitude</value> |
|
| 108 |
</_nullIf> |
|
| 109 |
</2> |
|
| 110 |
</_alt> |
|
| 111 |
</latitude> |
|
| 112 |
<longitude> |
|
| 113 |
<_alt> |
|
| 114 |
<1> |
|
| 115 |
<_nullIf> |
|
| 116 |
<null>0</null> |
|
| 117 |
<type>float</type> |
|
| 118 |
<value>$DecimalLongitude</value> |
|
| 119 |
</_nullIf> |
|
| 120 |
</1> |
|
| 121 |
<2> |
|
| 122 |
<_nullIf> |
|
| 123 |
<null>0</null> |
|
| 124 |
<type>float</type> |
|
| 125 |
<value>$VerbatimLongitude</value> |
|
| 126 |
</_nullIf> |
|
| 127 |
</2> |
|
| 128 |
</_alt> |
|
| 129 |
</longitude> |
|
| 130 |
<namedplace_id> |
|
| 131 |
<_simplifyPath> |
|
| 132 |
<next>parent_id</next> |
|
| 133 |
<path> |
|
| 134 |
<namedplace> |
|
| 135 |
<rank>county</rank> |
|
| 136 |
<placename>$County</placename> |
|
| 137 |
<parent_id> |
|
| 63 |
</_rangeStart> |
|
| 64 |
</value> |
|
| 65 |
</_units> |
|
| 66 |
</from> |
|
| 67 |
<to> |
|
| 68 |
<_units> |
|
| 69 |
<default>m</default> |
|
| 70 |
<to>m</to> |
|
| 71 |
<to></to> |
|
| 72 |
<value> |
|
| 73 |
<_alt> |
|
| 74 |
<1> |
|
| 75 |
<_replace> |
|
| 76 |
<\bca\.?></\bca\.?> |
|
| 77 |
<value>$MaximumElevationInMeter</value> |
|
| 78 |
</_replace> |
|
| 79 |
</1> |
|
| 80 |
<2> |
|
| 81 |
<_rangeEnd> |
|
| 82 |
<value> |
|
| 83 |
<_replace> |
|
| 84 |
<\bca\.?></\bca\.?> |
|
| 85 |
<value>$MinimumElevationInMeter</value> |
|
| 86 |
</_replace> |
|
| 87 |
</value> |
|
| 88 |
</_rangeEnd> |
|
| 89 |
</2> |
|
| 90 |
</_alt> |
|
| 91 |
</value> |
|
| 92 |
</_units> |
|
| 93 |
</to> |
|
| 94 |
</_range> |
|
| 95 |
</elevationrange> |
|
| 96 |
<locationdetermination> |
|
| 97 |
<latitude> |
|
| 98 |
<_alt> |
|
| 99 |
<1> |
|
| 100 |
<_nullIf> |
|
| 101 |
<null>0</null> |
|
| 102 |
<type>float</type> |
|
| 103 |
<value>$DecimalLatitude</value> |
|
| 104 |
</_nullIf> |
|
| 105 |
</1> |
|
| 106 |
<2> |
|
| 107 |
<_nullIf> |
|
| 108 |
<null>0</null> |
|
| 109 |
<type>float</type> |
|
| 110 |
<value>$VerbatimLatitude</value> |
|
| 111 |
</_nullIf> |
|
| 112 |
</2> |
|
| 113 |
</_alt> |
|
| 114 |
</latitude> |
|
| 115 |
<longitude> |
|
| 116 |
<_alt> |
|
| 117 |
<1> |
|
| 118 |
<_nullIf> |
|
| 119 |
<null>0</null> |
|
| 120 |
<type>float</type> |
|
| 121 |
<value>$DecimalLongitude</value> |
|
| 122 |
</_nullIf> |
|
| 123 |
</1> |
|
| 124 |
<2> |
|
| 125 |
<_nullIf> |
|
| 126 |
<null>0</null> |
|
| 127 |
<type>float</type> |
|
| 128 |
<value>$VerbatimLongitude</value> |
|
| 129 |
</_nullIf> |
|
| 130 |
</2> |
|
| 131 |
</_alt> |
|
| 132 |
</longitude> |
|
| 133 |
<namedplace_id> |
|
| 134 |
<_simplifyPath> |
|
| 135 |
<next>parent_id</next> |
|
| 136 |
<path> |
|
| 138 | 137 |
<namedplace> |
| 139 |
<rank>stateProvince</rank>
|
|
| 140 |
<placename>$StateProvince</placename>
|
|
| 138 |
<rank>county</rank>
|
|
| 139 |
<placename>$County</placename>
|
|
| 141 | 140 |
<parent_id> |
| 142 | 141 |
<namedplace> |
| 143 |
<rank>country</rank> |
|
| 144 |
<placename>$Country</placename> |
|
| 142 |
<rank>stateProvince</rank> |
|
| 143 |
<placename>$StateProvince</placename> |
|
| 144 |
<parent_id> |
|
| 145 |
<namedplace> |
|
| 146 |
<rank>country</rank> |
|
| 147 |
<placename>$Country</placename> |
|
| 148 |
</namedplace> |
|
| 149 |
</parent_id> |
|
| 145 | 150 |
</namedplace> |
| 146 | 151 |
</parent_id> |
| 147 | 152 |
</namedplace> |
| 148 |
</parent_id> |
|
| 149 |
</namedplace> |
|
| 150 |
</path> |
|
| 151 |
</_simplifyPath> |
|
| 152 |
</namedplace_id> |
|
| 153 |
</locationdetermination> |
|
| 154 |
<locationevent> |
|
| 155 |
<taxonoccurrence> |
|
| 156 |
<aggregateoccurrence> |
|
| 157 |
<collectiondate><_date><date>$LatestDateCollected</date></_date></collectiondate> |
|
| 158 |
<plantobservation> |
|
| 159 |
<specimenreplicate> |
|
| 160 |
<catalognumber_dwc>$CatalogNO</catalognumber_dwc> |
|
| 161 |
<collectioncode_dwc>$CollectionCD</collectioncode_dwc> |
|
| 162 |
<institution_id><party><organizationname>$InstitutionCD</organizationname></party></institution_id> |
|
| 163 |
</specimenreplicate> |
|
| 164 |
</plantobservation> |
|
| 165 |
</aggregateoccurrence> |
|
| 166 |
<authortaxoncode> |
|
| 167 |
<_alt> |
|
| 168 |
<1>$ScientificNameOriginal</1> |
|
| 169 |
<2>$ScientificName</2> |
|
| 170 |
</_alt> |
|
| 171 |
</authortaxoncode> |
|
| 172 |
<taxondetermination> |
|
| 173 |
<party_id> |
|
| 174 |
<party> |
|
| 175 |
<givenname><_namePart><first>$IdentifiedBy</first></_namePart></givenname> |
|
| 176 |
<middlename><_namePart><middle>$IdentifiedBy</middle></_namePart></middlename> |
|
| 177 |
<surname><_namePart><last>$IdentifiedBy</last></_namePart></surname> |
|
| 178 |
</party> |
|
| 179 |
</party_id> |
|
| 180 |
<plantconcept_id> |
|
| 181 |
<plantconcept> |
|
| 182 |
<plantname_id> |
|
| 183 |
<_simplifyPath> |
|
| 184 |
<next>parent_id</next> |
|
| 185 |
<path> |
|
| 186 |
<plantname> |
|
| 187 |
<rank>binomial</rank> |
|
| 188 |
<plantname>$ScientificName</plantname> |
|
| 189 |
<parent_id> |
|
| 153 |
</path> |
|
| 154 |
</_simplifyPath> |
|
| 155 |
</namedplace_id> |
|
| 156 |
</locationdetermination> |
|
| 157 |
<locationevent> |
|
| 158 |
<taxonoccurrence> |
|
| 159 |
<aggregateoccurrence> |
|
| 160 |
<collectiondate><_date><date>$LatestDateCollected</date></_date></collectiondate> |
|
| 161 |
<plantobservation> |
|
| 162 |
<specimenreplicate> |
|
| 163 |
<catalognumber_dwc>$CatalogNO</catalognumber_dwc> |
|
| 164 |
<collectioncode_dwc>$CollectionCD</collectioncode_dwc> |
|
| 165 |
<institution_id><party><organizationname>$InstitutionCD</organizationname></party></institution_id> |
|
| 166 |
</specimenreplicate> |
|
| 167 |
</plantobservation> |
|
| 168 |
</aggregateoccurrence> |
|
| 169 |
<authortaxoncode> |
|
| 170 |
<_alt> |
|
| 171 |
<1>$ScientificNameOriginal</1> |
|
| 172 |
<2>$ScientificName</2> |
|
| 173 |
</_alt> |
|
| 174 |
</authortaxoncode> |
|
| 175 |
<taxondetermination> |
|
| 176 |
<party_id> |
|
| 177 |
<party> |
|
| 178 |
<givenname><_namePart><first>$IdentifiedBy</first></_namePart></givenname> |
|
| 179 |
<middlename><_namePart><middle>$IdentifiedBy</middle></_namePart></middlename> |
|
| 180 |
<surname><_namePart><last>$IdentifiedBy</last></_namePart></surname> |
|
| 181 |
</party> |
|
| 182 |
</party_id> |
|
| 183 |
<plantconcept_id> |
|
| 184 |
<plantconcept> |
|
| 185 |
<plantname_id> |
|
| 186 |
<_simplifyPath> |
|
| 187 |
<next>parent_id</next> |
|
| 188 |
<path> |
|
| 190 | 189 |
<plantname> |
| 191 |
<rank>authority</rank>
|
|
| 192 |
<plantname>$AuthorOfScientificName</plantname>
|
|
| 190 |
<rank>binomial</rank>
|
|
| 191 |
<plantname>$ScientificName</plantname> |
|
| 193 | 192 |
<parent_id> |
| 194 | 193 |
<plantname> |
| 195 |
<rank>subspecies</rank>
|
|
| 196 |
<plantname>$InfraspecificEpithet</plantname>
|
|
| 194 |
<rank>authority</rank>
|
|
| 195 |
<plantname>$AuthorOfScientificName</plantname>
|
|
| 197 | 196 |
<parent_id> |
| 198 | 197 |
<plantname> |
| 199 |
<rank>species</rank> |
|
| 200 |
<plantname>$SpecificEpithet</plantname>
|
|
| 198 |
<rank>subspecies</rank>
|
|
| 199 |
<plantname>$InfraspecificEpithet</plantname>
|
|
| 201 | 200 |
<parent_id> |
| 202 | 201 |
<plantname> |
| 203 |
<rank>genus</rank>
|
|
| 204 |
<plantname>$Genus</plantname>
|
|
| 202 |
<rank>species</rank>
|
|
| 203 |
<plantname>$SpecificEpithet</plantname>
|
|
| 205 | 204 |
<parent_id> |
| 206 | 205 |
<plantname> |
| 207 |
<rank>family</rank> |
|
| 208 |
<plantname>$Family</plantname> |
|
| 206 |
<rank>genus</rank> |
|
| 207 |
<plantname>$Genus</plantname> |
|
| 208 |
<parent_id> |
|
| 209 |
<plantname> |
|
| 210 |
<rank>family</rank> |
|
| 211 |
<plantname>$Family</plantname> |
|
| 212 |
</plantname> |
|
| 213 |
</parent_id> |
|
| 209 | 214 |
</plantname> |
| 210 | 215 |
</parent_id> |
| 211 | 216 |
</plantname> |
| ... | ... | |
| 215 | 220 |
</plantname> |
| 216 | 221 |
</parent_id> |
| 217 | 222 |
</plantname> |
| 218 |
</parent_id> |
|
| 219 |
</plantname> |
|
| 220 |
</path> |
|
| 221 |
</_simplifyPath> |
|
| 222 |
</plantname_id> |
|
| 223 |
</plantconcept> |
|
| 224 |
</plantconcept_id> |
|
| 225 |
</taxondetermination> |
|
| 226 |
<taxondetermination> |
|
| 227 |
<isoriginal>true</isoriginal> |
|
| 228 |
<plantconcept_id> |
|
| 229 |
<plantconcept> |
|
| 230 |
<plantname_id> |
|
| 231 |
<_simplifyPath> |
|
| 232 |
<next>parent_id</next> |
|
| 233 |
<path> |
|
| 234 |
<plantname> |
|
| 235 |
<rank>binomial</rank> |
|
| 236 |
<plantname>$ScientificNameOriginal</plantname> |
|
| 237 |
<parent_id> |
|
| 223 |
</path> |
|
| 224 |
</_simplifyPath> |
|
| 225 |
</plantname_id> |
|
| 226 |
</plantconcept> |
|
| 227 |
</plantconcept_id> |
|
| 228 |
</taxondetermination> |
|
| 229 |
<taxondetermination> |
|
| 230 |
<isoriginal>true</isoriginal> |
|
| 231 |
<plantconcept_id> |
|
| 232 |
<plantconcept> |
|
| 233 |
<plantname_id> |
|
| 234 |
<_simplifyPath> |
|
| 235 |
<next>parent_id</next> |
|
| 236 |
<path> |
|
| 238 | 237 |
<plantname> |
| 239 |
<rank>authority</rank> |
|
| 238 |
<rank>binomial</rank> |
|
| 239 |
<plantname>$ScientificNameOriginal</plantname> |
|
| 240 | 240 |
<parent_id> |
| 241 | 241 |
<plantname> |
| 242 |
<rank>subspecies</rank>
|
|
| 242 |
<rank>authority</rank>
|
|
| 243 | 243 |
<parent_id> |
| 244 | 244 |
<plantname> |
| 245 |
<rank>species</rank> |
|
| 245 |
<rank>subspecies</rank>
|
|
| 246 | 246 |
<parent_id> |
| 247 | 247 |
<plantname> |
| 248 |
<rank>genus</rank> |
|
| 249 |
<plantname>$GBIFGenusOriginal</plantname> |
|
| 248 |
<rank>species</rank> |
|
| 250 | 249 |
<parent_id> |
| 251 | 250 |
<plantname> |
| 252 |
<rank>family</rank> |
|
| 253 |
<plantname>$GBIFFamilyOriginal</plantname> |
|
| 251 |
<rank>genus</rank> |
|
| 252 |
<plantname>$GBIFGenusOriginal</plantname> |
|
| 253 |
<parent_id> |
|
| 254 |
<plantname> |
|
| 255 |
<rank>family</rank> |
|
| 256 |
<plantname>$GBIFFamilyOriginal</plantname> |
|
| 257 |
</plantname> |
|
| 258 |
</parent_id> |
|
| 254 | 259 |
</plantname> |
| 255 | 260 |
</parent_id> |
| 256 | 261 |
</plantname> |
| ... | ... | |
| 260 | 265 |
</plantname> |
| 261 | 266 |
</parent_id> |
| 262 | 267 |
</plantname> |
| 263 |
</parent_id>
|
|
| 264 |
</plantname>
|
|
| 265 |
</path>
|
|
| 266 |
</_simplifyPath>
|
|
| 267 |
</plantname_id>
|
|
| 268 |
</plantconcept>
|
|
| 269 |
</plantconcept_id>
|
|
| 270 |
</taxondetermination>
|
|
| 271 |
<verbatimcollectorname>$Collector</verbatimcollectorname>
|
|
| 272 |
</taxonoccurrence>
|
|
| 273 |
</locationevent>
|
|
| 274 |
<locationnarrative>$Locality</locationnarrative>
|
|
| 275 |
</location>
|
|
| 268 |
</path>
|
|
| 269 |
</_simplifyPath>
|
|
| 270 |
</plantname_id>
|
|
| 271 |
</plantconcept>
|
|
| 272 |
</plantconcept_id>
|
|
| 273 |
</taxondetermination>
|
|
| 274 |
<verbatimcollectorname>$Collector</verbatimcollectorname>
|
|
| 275 |
</taxonoccurrence>
|
|
| 276 |
</locationevent>
|
|
| 277 |
<locationnarrative>$Locality</locationnarrative>
|
|
| 278 |
</location>
|
|
| 279 |
</path>
|
|
| 280 |
</_simplifyPath>
|
|
| 276 | 281 |
</VegBIEN> |
| 277 | 282 |
Inserted 37 new rows into database |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Added /_simplifyPath:[next=parent_id]/path to root so the returned subplot location will be its parent location if there is no subplot name or ID (indicating that that particular plot did not have subplots). Note that this also causes the parent_id forwarding effect to occur for all other tables containing parent_id, which will help prevent similar issues with subplot events, etc. This will hopefully fix the SALVIAS.plotObservations bug where some organisms did not have a subplot #, causing the subplot location to become NULL and causing the corresponding locationevent rows not to match the locationevent_unique_within_location index filter condition (which requires a parent_id), which caused multiple output table pkeys to be returned for those rows, violating the locationevent_pkeys temp table's primary key.