Revision 4621
Added by Aaron Marcuse-Kubitza almost 12 years ago
test.xml.ref | ||
---|---|---|
1 | 1 |
Put template: |
2 | 2 |
<VegBIEN> |
3 |
<location id="-1"> |
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<authorlocationcode> |
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<_join> |
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<1>$InstitutionCode</1> |
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<2>$CollectionCode</2> |
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<3>$CatalogNumber</3> |
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</_join> |
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</authorlocationcode> |
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<elevation> |
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<_avg> |
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<max> |
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<_units> |
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<default>m</default> |
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<to>m</to> |
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<to></to> |
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<value> |
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<_replace> |
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<\bca\.?></\bca\.?> |
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<value>$MaximumElevation</value> |
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</_replace> |
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</value> |
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</_units> |
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</max> |
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<min> |
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<_units> |
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<default>m</default> |
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<to>m</to> |
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<to></to> |
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<value> |
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<_rangeStart> |
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<_simplifyPath id="-1"> |
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<next>parent_id</next> |
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<path> |
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<location> |
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<authorlocationcode> |
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<_join> |
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<1>$InstitutionCode</1> |
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<2>$CollectionCode</2> |
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<3>$CatalogNumber</3> |
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</_join> |
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</authorlocationcode> |
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<elevation> |
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<_avg> |
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<max> |
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<_units> |
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<default>m</default> |
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<to>m</to> |
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<to></to> |
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<value> |
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<_replace> |
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<\bca\.?></\bca\.?> |
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<value>$MinimumElevation</value>
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<value>$MaximumElevation</value>
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|
37 | 25 |
</_replace> |
38 | 26 |
</value> |
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</_rangeStart> |
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</value> |
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</_units> |
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</min> |
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</_avg> |
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</elevation> |
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<elevationrange> |
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<_range> |
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<from> |
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<_units> |
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<default>m</default> |
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<to>m</to> |
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<to></to> |
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<value> |
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<_rangeStart> |
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</_units> |
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</max> |
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<min> |
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<_units> |
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<default>m</default> |
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<to>m</to> |
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<to></to> |
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54 | 34 |
<value> |
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<_replace> |
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<\bca\.?></\bca\.?> |
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<value>$MinimumElevation</value> |
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</_replace> |
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<_rangeStart> |
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<value> |
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<_replace> |
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<\bca\.?></\bca\.?> |
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<value>$MinimumElevation</value> |
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</_replace> |
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</value> |
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</_rangeStart> |
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</value> |
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</_rangeStart> |
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</value> |
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</_units> |
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</from> |
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<to> |
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<_units> |
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<default>m</default> |
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<to>m</to> |
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<to></to> |
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<value> |
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<_alt> |
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<1> |
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<_replace> |
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<\bca\.?></\bca\.?> |
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<value>$MaximumElevation</value> |
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</_replace> |
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</1> |
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<2> |
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<_rangeEnd> |
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</_units> |
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</min> |
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</_avg> |
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</elevation> |
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<elevationrange> |
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<_range> |
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<from> |
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<_units> |
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<default>m</default> |
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<to>m</to> |
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<to></to> |
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<value> |
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<_rangeStart> |
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<value> |
80 | 58 |
<_replace> |
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<\bca\.?></\bca\.?> |
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<value>$MinimumElevation</value> |
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</_replace> |
84 | 62 |
</value> |
85 |
</_rangeEnd> |
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</2> |
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</_alt> |
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</value> |
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</_units> |
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</to> |
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</_range> |
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</elevationrange> |
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<locationdetermination> |
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<latitude> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$latitude</value> |
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</_nullIf> |
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</latitude> |
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<longitude> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$longitude</value> |
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</_nullIf> |
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</longitude> |
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<namedplace_id> |
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<_simplifyPath> |
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<next>parent_id</next> |
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<path> |
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<namedplace> |
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<rank>county</rank> |
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<placename>$County</placename> |
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<parent_id> |
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</_rangeStart> |
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</value> |
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</_units> |
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</from> |
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<to> |
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<_units> |
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<default>m</default> |
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<to>m</to> |
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<to></to> |
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<value> |
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<_alt> |
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<1> |
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<_replace> |
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<\bca\.?></\bca\.?> |
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<value>$MaximumElevation</value> |
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</_replace> |
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</1> |
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<2> |
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<_rangeEnd> |
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<value> |
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<_replace> |
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<\bca\.?></\bca\.?> |
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<value>$MinimumElevation</value> |
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</_replace> |
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</value> |
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</_rangeEnd> |
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</2> |
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</_alt> |
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</value> |
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</_units> |
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</to> |
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</_range> |
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</elevationrange> |
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<locationdetermination> |
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<latitude> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$latitude</value> |
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</_nullIf> |
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</latitude> |
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<longitude> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$longitude</value> |
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</_nullIf> |
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</longitude> |
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<namedplace_id> |
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<_simplifyPath> |
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<next>parent_id</next> |
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<path> |
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<namedplace> |
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<rank>stateProvince</rank>
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<placename>$StateProvince</placename>
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<rank>county</rank>
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<placename>$County</placename>
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119 | 118 |
<parent_id> |
120 | 119 |
<namedplace> |
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<rank>country</rank>
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<placename>$Country</placename>
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<rank>stateProvince</rank>
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<placename>$StateProvince</placename>
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123 | 122 |
<parent_id> |
124 | 123 |
<namedplace> |
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<rank>continent</rank> |
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<placename>$ContinentOcean</placename> |
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<rank>country</rank> |
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<placename>$Country</placename> |
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<parent_id> |
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<namedplace> |
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<rank>continent</rank> |
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<placename>$ContinentOcean</placename> |
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</namedplace> |
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</parent_id> |
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127 | 132 |
</namedplace> |
128 | 133 |
</parent_id> |
129 | 134 |
</namedplace> |
130 | 135 |
</parent_id> |
131 | 136 |
</namedplace> |
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</parent_id> |
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</namedplace> |
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</path> |
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</_simplifyPath> |
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</namedplace_id> |
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</locationdetermination> |
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<locationevent> |
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<taxonoccurrence> |
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<aggregateoccurrence> |
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<collectiondate> |
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<_date> |
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<day> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$DayCollected</value> |
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</_nullIf> |
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</day> |
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<month> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$MonthCollected</value> |
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</_nullIf> |
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</month> |
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<year> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$YearCollected</value> |
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</_nullIf> |
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</year> |
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</_date> |
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</collectiondate> |
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<count>$IndividualCount</count> |
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<notes> |
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<_alt> |
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<0>$convertednotes</0> |
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<1>$notes</1> |
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</_alt> |
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</notes> |
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<plantobservation> |
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<collectionnumber>$CollectorNumber</collectionnumber> |
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<specimenreplicate> |
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<catalognumber_dwc>$CatalogNumber</catalognumber_dwc> |
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<collectioncode_dwc>$CollectionCode</collectioncode_dwc> |
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<institution_id><party><organizationname>$InstitutionCode</organizationname></party></institution_id> |
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</specimenreplicate> |
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</plantobservation> |
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</aggregateoccurrence> |
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<authortaxoncode> |
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<_alt> |
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<1>$CollectorNumber</1> |
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<2>$ScientificName</2> |
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</_alt> |
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</authortaxoncode> |
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<taxondetermination> |
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<party_id> |
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<party> |
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<givenname><_namePart><first>$IdentifiedBy</first></_namePart></givenname> |
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<middlename><_namePart><middle>$IdentifiedBy</middle></_namePart></middlename> |
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<surname><_namePart><last>$IdentifiedBy</last></_namePart></surname> |
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</party> |
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</party_id> |
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<plantconcept_id> |
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<plantconcept> |
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<plantname_id> |
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<_simplifyPath> |
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<next>parent_id</next> |
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<path> |
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<plantname> |
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<rank>binomial</rank> |
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<plantname>$ScientificName</plantname> |
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<parent_id> |
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</path> |
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</_simplifyPath> |
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</namedplace_id> |
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</locationdetermination> |
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<locationevent> |
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<taxonoccurrence> |
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<aggregateoccurrence> |
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<collectiondate> |
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<_date> |
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<day> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$DayCollected</value> |
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</_nullIf> |
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</day> |
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153 |
<month> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$MonthCollected</value> |
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</_nullIf> |
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</month> |
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<year> |
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161 |
<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$YearCollected</value> |
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</_nullIf> |
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</year> |
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</_date> |
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</collectiondate> |
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<count>$IndividualCount</count> |
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<notes> |
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<_alt> |
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<0>$convertednotes</0> |
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<1>$notes</1> |
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</_alt> |
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</notes> |
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<plantobservation> |
|
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<collectionnumber>$CollectorNumber</collectionnumber> |
|
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<specimenreplicate> |
|
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<catalognumber_dwc>$CatalogNumber</catalognumber_dwc> |
|
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<collectioncode_dwc>$CollectionCode</collectioncode_dwc> |
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<institution_id><party><organizationname>$InstitutionCode</organizationname></party></institution_id> |
|
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</specimenreplicate> |
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</plantobservation> |
|
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</aggregateoccurrence> |
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<authortaxoncode> |
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<_alt> |
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<1>$CollectorNumber</1> |
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<2>$ScientificName</2> |
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</_alt> |
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</authortaxoncode> |
|
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<taxondetermination> |
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<party_id> |
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<party> |
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<givenname><_namePart><first>$IdentifiedBy</first></_namePart></givenname> |
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<middlename><_namePart><middle>$IdentifiedBy</middle></_namePart></middlename> |
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<surname><_namePart><last>$IdentifiedBy</last></_namePart></surname> |
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197 |
</party> |
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</party_id> |
|
199 |
<plantconcept_id> |
|
200 |
<plantconcept> |
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201 |
<plantname_id> |
|
202 |
<_simplifyPath> |
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203 |
<next>parent_id</next> |
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204 |
<path> |
|
206 | 205 |
<plantname> |
207 |
<rank>authority</rank>
|
|
208 |
<plantname>$ScientificNameAuthor</plantname>
|
|
206 |
<rank>binomial</rank>
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|
207 |
<plantname>$ScientificName</plantname> |
|
209 | 208 |
<parent_id> |
210 | 209 |
<plantname> |
211 |
<rank>subspecies</rank>
|
|
212 |
<plantname>$Subspecies</plantname>
|
|
210 |
<rank>authority</rank>
|
|
211 |
<plantname>$ScientificNameAuthor</plantname>
|
|
213 | 212 |
<parent_id> |
214 | 213 |
<plantname> |
215 |
<rank>species</rank> |
|
216 |
<plantname>$species</plantname> |
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214 |
<rank>subspecies</rank>
|
|
215 |
<plantname>$Subspecies</plantname>
|
|
217 | 216 |
<parent_id> |
218 | 217 |
<plantname> |
219 |
<rank>genus</rank>
|
|
220 |
<plantname>$genus</plantname>
|
|
218 |
<rank>species</rank>
|
|
219 |
<plantname>$species</plantname>
|
|
221 | 220 |
<parent_id> |
222 | 221 |
<plantname> |
223 |
<rank>family</rank>
|
|
224 |
<plantname>$family</plantname>
|
|
222 |
<rank>genus</rank>
|
|
223 |
<plantname>$genus</plantname>
|
|
225 | 224 |
<parent_id> |
226 | 225 |
<plantname> |
227 |
<rank>order</rank> |
|
226 |
<rank>family</rank> |
|
227 |
<plantname>$family</plantname> |
|
228 | 228 |
<parent_id> |
229 | 229 |
<plantname> |
230 |
<rank>class</rank>
|
|
230 |
<rank>order</rank>
|
|
231 | 231 |
<parent_id> |
232 | 232 |
<plantname> |
233 |
<rank>subkingdom</rank>
|
|
233 |
<rank>class</rank>
|
|
234 | 234 |
<parent_id> |
235 | 235 |
<plantname> |
236 |
<rank>kingdom</rank> |
|
237 |
<plantname>$Kingdom</plantname> |
|
236 |
<rank>subkingdom</rank> |
|
237 |
<parent_id> |
|
238 |
<plantname> |
|
239 |
<rank>kingdom</rank> |
|
240 |
<plantname>$Kingdom</plantname> |
|
241 |
</plantname> |
|
242 |
</parent_id> |
|
238 | 243 |
</plantname> |
239 | 244 |
</parent_id> |
240 | 245 |
</plantname> |
... | ... | |
252 | 257 |
</plantname> |
253 | 258 |
</parent_id> |
254 | 259 |
</plantname> |
255 |
</parent_id>
|
|
256 |
</plantname>
|
|
257 |
</path>
|
|
258 |
</_simplifyPath>
|
|
259 |
</plantname_id>
|
|
260 |
</plantconcept>
|
|
261 |
</plantconcept_id>
|
|
262 |
</taxondetermination>
|
|
263 |
<verbatimcollectorname>$Collector</verbatimcollectorname>
|
|
264 |
</taxonoccurrence>
|
|
265 |
</locationevent>
|
|
266 |
<locationnarrative>$Locality</locationnarrative>
|
|
267 |
</location>
|
|
260 |
</path>
|
|
261 |
</_simplifyPath>
|
|
262 |
</plantname_id>
|
|
263 |
</plantconcept>
|
|
264 |
</plantconcept_id>
|
|
265 |
</taxondetermination>
|
|
266 |
<verbatimcollectorname>$Collector</verbatimcollectorname>
|
|
267 |
</taxonoccurrence>
|
|
268 |
</locationevent>
|
|
269 |
<locationnarrative>$Locality</locationnarrative>
|
|
270 |
</location>
|
|
271 |
</path>
|
|
272 |
</_simplifyPath>
|
|
268 | 273 |
</VegBIEN> |
269 | 274 |
Inserted 38 new rows into database |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Added /_simplifyPath:[next=parent_id]/path to root so the returned subplot location will be its parent location if there is no subplot name or ID (indicating that that particular plot did not have subplots). Note that this also causes the parent_id forwarding effect to occur for all other tables containing parent_id, which will help prevent similar issues with subplot events, etc. This will hopefully fix the SALVIAS.plotObservations bug where some organisms did not have a subplot #, causing the subplot location to become NULL and causing the corresponding locationevent rows not to match the locationevent_unique_within_location index filter condition (which requires a parent_id), which caused multiple output table pkeys to be returned for those rows, violating the locationevent_pkeys temp table's primary key.