Revision 4621
Added by Aaron Marcuse-Kubitza almost 12 years ago
| test.xml.ref | ||
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| 1 | 1 |
Put template: |
| 2 | 2 |
<VegBIEN> |
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<location id="-1">
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<authorlocationcode>
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<_alt>
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<1>$id</1>
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<2>
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<_join>
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<1>$institutionCode</1>
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<_simplifyPath id="-1">
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<next>parent_id</next>
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<path>
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<location>
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<authorlocationcode>
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<_alt>
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<1>$id</1>
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| 10 | 10 |
<2> |
| 11 | 11 |
<_join> |
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<1>$collectionCode</1> |
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<2>$collectionID</2> |
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<1>$institutionCode</1> |
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<2> |
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<_join> |
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<1>$collectionCode</1> |
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<2>$collectionID</2> |
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</_join> |
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</2> |
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| 14 | 19 |
</_join> |
| 15 | 20 |
</2> |
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</_join> |
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</2> |
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</_alt> |
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</authorlocationcode> |
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<locationdetermination> |
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<namedplace_id> |
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<_simplifyPath> |
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<next>parent_id</next> |
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<path> |
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<namedplace> |
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<rank>county</rank> |
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<parent_id> |
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</_alt> |
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</authorlocationcode> |
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<locationdetermination> |
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<namedplace_id> |
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<_simplifyPath> |
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<next>parent_id</next> |
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<path> |
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| 28 | 28 |
<namedplace> |
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<rank>stateProvince</rank>
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<rank>county</rank>
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| 30 | 30 |
<parent_id> |
| 31 | 31 |
<namedplace> |
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<rank>country</rank>
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<rank>stateProvince</rank>
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| 33 | 33 |
<parent_id> |
| 34 | 34 |
<namedplace> |
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<rank>continent</rank> |
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<placename>$continent</placename> |
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<rank>country</rank> |
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<parent_id> |
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<namedplace> |
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<rank>continent</rank> |
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<placename>$continent</placename> |
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</namedplace> |
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</parent_id> |
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| 37 | 42 |
</namedplace> |
| 38 | 43 |
</parent_id> |
| 39 | 44 |
</namedplace> |
| 40 | 45 |
</parent_id> |
| 41 | 46 |
</namedplace> |
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</parent_id> |
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</namedplace> |
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</path> |
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</_simplifyPath> |
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</namedplace_id> |
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</locationdetermination> |
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<locationevent> |
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<taxonoccurrence> |
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<aggregateoccurrence> |
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<count>$individualCount</count> |
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<plantobservation> |
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<specimenreplicate> |
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<collectioncode_dwc> |
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<_join> |
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<1>$collectionCode</1> |
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<2>$collectionID</2> |
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</_join> |
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</collectioncode_dwc> |
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<institution_id><party><organizationname>$institutionCode</organizationname></party></institution_id> |
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<sourceaccessioncode>$id</sourceaccessioncode> |
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</specimenreplicate> |
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</plantobservation> |
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</aggregateoccurrence> |
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<iscultivated> |
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<_map> |
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<cultivated>t</cultivated> |
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<wild>f</wild> |
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<*></*> |
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<value>$establishmentMeans</value> |
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</_map> |
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</iscultivated> |
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<isnative> |
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<_map> |
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<native>t</native> |
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<exotic>f</exotic> |
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<*></*> |
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<value>$establishmentMeans</value> |
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</_map> |
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</isnative> |
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<taxondetermination> |
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<plantconcept_id> |
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<plantconcept> |
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<plantname_id> |
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<_simplifyPath> |
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<next>parent_id</next> |
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<path> |
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<plantname> |
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<rank>binomial</rank> |
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<parent_id> |
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</path> |
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</_simplifyPath> |
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</namedplace_id> |
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</locationdetermination> |
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<locationevent> |
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<taxonoccurrence> |
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<aggregateoccurrence> |
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<count>$individualCount</count> |
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<plantobservation> |
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<specimenreplicate> |
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<collectioncode_dwc> |
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<_join> |
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<1>$collectionCode</1> |
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<2>$collectionID</2> |
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</_join> |
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</collectioncode_dwc> |
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<institution_id><party><organizationname>$institutionCode</organizationname></party></institution_id> |
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<sourceaccessioncode>$id</sourceaccessioncode> |
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</specimenreplicate> |
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</plantobservation> |
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</aggregateoccurrence> |
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<iscultivated> |
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<_map> |
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<cultivated>t</cultivated> |
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<wild>f</wild> |
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<*></*> |
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<value>$establishmentMeans</value> |
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</_map> |
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</iscultivated> |
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<isnative> |
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<_map> |
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<native>t</native> |
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<exotic>f</exotic> |
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<*></*> |
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<value>$establishmentMeans</value> |
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</_map> |
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</isnative> |
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<taxondetermination> |
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<plantconcept_id> |
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<plantconcept> |
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<plantname_id> |
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<_simplifyPath> |
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<next>parent_id</next> |
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<path> |
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| 91 | 91 |
<plantname> |
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<rank>authority</rank>
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<rank>binomial</rank>
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| 93 | 93 |
<parent_id> |
| 94 | 94 |
<plantname> |
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<rank>subspecies</rank>
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<rank>authority</rank>
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| 96 | 96 |
<parent_id> |
| 97 | 97 |
<plantname> |
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<rank>species</rank> |
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<rank>subspecies</rank>
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| 99 | 99 |
<parent_id> |
| 100 | 100 |
<plantname> |
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<rank>genus</rank> |
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<plantname>$genus</plantname> |
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<rank>species</rank> |
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| 103 | 102 |
<parent_id> |
| 104 | 103 |
<plantname> |
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<rank>family</rank> |
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<plantname>$family</plantname> |
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<rank>genus</rank> |
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<plantname>$genus</plantname> |
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<parent_id> |
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<plantname> |
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<rank>family</rank> |
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<plantname>$family</plantname> |
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</plantname> |
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</parent_id> |
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| 107 | 112 |
</plantname> |
| 108 | 113 |
</parent_id> |
| 109 | 114 |
</plantname> |
| ... | ... | |
| 113 | 118 |
</plantname> |
| 114 | 119 |
</parent_id> |
| 115 | 120 |
</plantname> |
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</parent_id>
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</plantname>
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</path>
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</_simplifyPath>
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</plantname_id>
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</plantconcept>
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</plantconcept_id>
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</taxondetermination>
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</taxonoccurrence>
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</locationevent>
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<locationnarrative>$locality</locationnarrative>
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</location>
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</path>
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</_simplifyPath>
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</plantname_id>
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</plantconcept>
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</plantconcept_id>
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</taxondetermination>
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</taxonoccurrence>
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</locationevent>
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<locationnarrative>$locality</locationnarrative>
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</location>
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</path>
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</_simplifyPath>
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| 128 | 133 |
</VegBIEN> |
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Inserted 22 new rows into database |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Added /_simplifyPath:[next=parent_id]/path to root so the returned subplot location will be its parent location if there is no subplot name or ID (indicating that that particular plot did not have subplots). Note that this also causes the parent_id forwarding effect to occur for all other tables containing parent_id, which will help prevent similar issues with subplot events, etc. This will hopefully fix the SALVIAS.plotObservations bug where some organisms did not have a subplot #, causing the subplot location to become NULL and causing the corresponding locationevent rows not to match the locationevent_unique_within_location index filter condition (which requires a parent_id), which caused multiple output table pkeys to be returned for those rows, violating the locationevent_pkeys temp table's primary key.