Revision 4621
Added by Aaron Marcuse-Kubitza almost 12 years ago
| test.xml.ref | ||
|---|---|---|
| 1 | 1 |
Put template: |
| 2 | 2 |
<VegBIEN> |
| 3 |
<location id="-1"> |
|
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<parent_id> |
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<_simplifyPath id="-1"> |
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<next>parent_id</next> |
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<path> |
|
| 5 | 6 |
<location> |
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<authorlocationcode>$Inventory name</authorlocationcode> |
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<sourceaccessioncode>$Inventory code</sourceaccessioncode> |
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</location> |
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| 9 |
</parent_id> |
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<authorlocationcode>$Number of subplot</authorlocationcode> |
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<locationevent> |
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<project_id><project><projectname>$Expedition</projectname></project></project_id> |
|
| 13 |
<taxonoccurrence> |
|
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<aggregateoccurrence> |
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<notes>$Observations</notes> |
|
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<plantobservation> |
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<collectionnumber>$Tree number</collectionnumber> |
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<specimenreplicate><catalognumber_dwc>$Specimen</catalognumber_dwc></specimenreplicate> |
|
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<stemobservation> |
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<authorstemcode>$Trunk</authorstemcode> |
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<definedvalue fkey="tablerecord_id"> |
|
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<userdefined_id> |
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<userdefined> |
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<tablename>stemobservation</tablename> |
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<userdefinedname>lianaInfestation</userdefinedname> |
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</userdefined> |
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</userdefined_id> |
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<definedvalue>$Liana presence</definedvalue> |
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</definedvalue> |
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<diameterbreastheight>$Diameter</diameterbreastheight> |
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<height>$Total height</height> |
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<stemtag> |
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<iscurrent>true</iscurrent> |
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<tag>$Tag number</tag> |
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</stemtag> |
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<xposition>$Subplot X</xposition> |
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<yposition>$Subplot Y</yposition> |
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</stemobservation> |
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</plantobservation> |
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</aggregateoccurrence> |
|
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<authortaxoncode> |
|
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<_alt> |
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<1>$Tree number</1> |
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<2>$Specie+autor</2> |
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</_alt> |
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</authortaxoncode> |
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<growthform> |
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<_map> |
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<T>tree</T> |
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<Arbol>tree</Arbol> |
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<palm>tree</palm> |
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<H>hemiepiphyte</H> |
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<Hemiepífito>hemiepiphyte</Hemiepífito> |
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<L>liana</L> |
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<l>liana</l> |
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<L?>liana</L?> |
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<Liana>liana</Liana> |
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<E>epiphyte</E> |
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<S>shrub</S> |
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<Hb>herb</Hb> |
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<vine-herbaceous>vine</vine-herbaceous> |
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<graminoid>grass</graminoid> |
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<rosette>forb</rosette> |
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<*>*</*> |
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<value>$Habit</value> |
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</_map> |
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</growthform> |
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<taxondetermination> |
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<party_id> |
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<party> |
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<givenname><_namePart><first>$Determined by</first></_namePart></givenname> |
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<middlename><_namePart><middle>$Determined by</middle></_namePart></middlename> |
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<surname><_namePart><last>$Determined by</last></_namePart></surname> |
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</party> |
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</party_id> |
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<plantconcept_id> |
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<plantconcept> |
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<plantname_id> |
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<_simplifyPath> |
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<next>parent_id</next> |
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<path> |
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<plantname> |
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<rank>binomial</rank> |
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<plantname>$Specie+autor</plantname> |
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<parent_id> |
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<parent_id> |
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<location> |
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<authorlocationcode>$Inventory name</authorlocationcode> |
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<sourceaccessioncode>$Inventory code</sourceaccessioncode> |
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</location> |
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</parent_id> |
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<authorlocationcode>$Number of subplot</authorlocationcode> |
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<locationevent> |
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<project_id><project><projectname>$Expedition</projectname></project></project_id> |
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<taxonoccurrence> |
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<aggregateoccurrence> |
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<notes>$Observations</notes> |
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<plantobservation> |
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<collectionnumber>$Tree number</collectionnumber> |
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<specimenreplicate><catalognumber_dwc>$Specimen</catalognumber_dwc></specimenreplicate> |
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<stemobservation> |
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<authorstemcode>$Trunk</authorstemcode> |
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<definedvalue fkey="tablerecord_id"> |
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<userdefined_id> |
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<userdefined> |
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<tablename>stemobservation</tablename> |
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<userdefinedname>lianaInfestation</userdefinedname> |
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</userdefined> |
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</userdefined_id> |
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<definedvalue>$Liana presence</definedvalue> |
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</definedvalue> |
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<diameterbreastheight>$Diameter</diameterbreastheight> |
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<height>$Total height</height> |
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<stemtag> |
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<iscurrent>true</iscurrent> |
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<tag>$Tag number</tag> |
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</stemtag> |
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<xposition>$Subplot X</xposition> |
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<yposition>$Subplot Y</yposition> |
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</stemobservation> |
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</plantobservation> |
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</aggregateoccurrence> |
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<authortaxoncode> |
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<_alt> |
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<1>$Tree number</1> |
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<2>$Specie+autor</2> |
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</_alt> |
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</authortaxoncode> |
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<growthform> |
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<_map> |
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<T>tree</T> |
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<Arbol>tree</Arbol> |
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<palm>tree</palm> |
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<H>hemiepiphyte</H> |
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<Hemiepífito>hemiepiphyte</Hemiepífito> |
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<L>liana</L> |
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<l>liana</l> |
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<L?>liana</L?> |
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<Liana>liana</Liana> |
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<E>epiphyte</E> |
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<S>shrub</S> |
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<Hb>herb</Hb> |
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<vine-herbaceous>vine</vine-herbaceous> |
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<graminoid>grass</graminoid> |
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<rosette>forb</rosette> |
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<*>*</*> |
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<value>$Habit</value> |
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</_map> |
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</growthform> |
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<taxondetermination> |
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<party_id> |
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<party> |
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<givenname><_namePart><first>$Determined by</first></_namePart></givenname> |
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<middlename><_namePart><middle>$Determined by</middle></_namePart></middlename> |
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<surname><_namePart><last>$Determined by</last></_namePart></surname> |
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</party> |
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</party_id> |
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<plantconcept_id> |
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<plantconcept> |
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<plantname_id> |
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<_simplifyPath> |
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<next>parent_id</next> |
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<path> |
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| 86 | 85 |
<plantname> |
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<rank>authority</rank>
|
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<plantname>$Autor (revised)</plantname>
|
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<rank>binomial</rank>
|
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<plantname>$Specie+autor</plantname>
|
|
| 89 | 88 |
<parent_id> |
| 90 | 89 |
<plantname> |
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<rank>subspecies</rank> |
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<rank>authority</rank> |
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<plantname>$Autor (revised)</plantname> |
|
| 92 | 92 |
<parent_id> |
| 93 | 93 |
<plantname> |
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<rank>species</rank> |
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<plantname>$Specific epithet</plantname> |
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<rank>subspecies</rank> |
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| 96 | 95 |
<parent_id> |
| 97 | 96 |
<plantname> |
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<rank>genus</rank>
|
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<plantname>$Genera</plantname>
|
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<rank>species</rank>
|
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<plantname>$Specific epithet</plantname>
|
|
| 100 | 99 |
<parent_id> |
| 101 | 100 |
<plantname> |
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<rank>family</rank> |
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<plantname>$Family (revised)</plantname> |
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<rank>genus</rank> |
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<plantname>$Genera</plantname> |
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<parent_id> |
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<plantname> |
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<rank>family</rank> |
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<plantname>$Family (revised)</plantname> |
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</plantname> |
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</parent_id> |
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| 104 | 109 |
</plantname> |
| 105 | 110 |
</parent_id> |
| 106 | 111 |
</plantname> |
| ... | ... | |
| 110 | 115 |
</plantname> |
| 111 | 116 |
</parent_id> |
| 112 | 117 |
</plantname> |
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</parent_id> |
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</plantname> |
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</path> |
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</_simplifyPath> |
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</plantname_id> |
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</plantconcept> |
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</plantconcept_id> |
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<taxonfit>$Qualifier</taxonfit> |
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</taxondetermination> |
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<taxondetermination> |
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<isoriginal>true</isoriginal> |
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<plantconcept_id> |
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<plantconcept> |
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<plantname_id> |
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<_simplifyPath> |
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<next>parent_id</next> |
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<path> |
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<plantname> |
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<rank>binomial</rank> |
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<parent_id> |
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</path> |
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</_simplifyPath> |
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</plantname_id> |
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</plantconcept> |
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</plantconcept_id> |
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<taxonfit>$Qualifier</taxonfit> |
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</taxondetermination> |
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<taxondetermination> |
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<isoriginal>true</isoriginal> |
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<plantconcept_id> |
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<plantconcept> |
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<plantname_id> |
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<_simplifyPath> |
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<next>parent_id</next> |
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<path> |
|
| 133 | 133 |
<plantname> |
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<rank>authority</rank>
|
|
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<rank>binomial</rank>
|
|
| 135 | 135 |
<parent_id> |
| 136 | 136 |
<plantname> |
| 137 |
<rank>subspecies</rank>
|
|
| 137 |
<rank>authority</rank>
|
|
| 138 | 138 |
<parent_id> |
| 139 | 139 |
<plantname> |
| 140 |
<rank>species</rank> |
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<rank>subspecies</rank>
|
|
| 141 | 141 |
<parent_id> |
| 142 | 142 |
<plantname> |
| 143 |
<rank>genus</rank> |
|
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<plantname>$Field name</plantname> |
|
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<rank>species</rank> |
|
| 145 | 144 |
<parent_id> |
| 146 | 145 |
<plantname> |
| 147 |
<rank>family</rank> |
|
| 148 |
<plantname>$Field family</plantname> |
|
| 146 |
<rank>genus</rank> |
|
| 147 |
<plantname>$Field name</plantname> |
|
| 148 |
<parent_id> |
|
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<plantname> |
|
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<rank>family</rank> |
|
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<plantname>$Field family</plantname> |
|
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</plantname> |
|
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</parent_id> |
|
| 149 | 154 |
</plantname> |
| 150 | 155 |
</parent_id> |
| 151 | 156 |
</plantname> |
| ... | ... | |
| 155 | 160 |
</plantname> |
| 156 | 161 |
</parent_id> |
| 157 | 162 |
</plantname> |
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</parent_id>
|
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</plantname>
|
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</path>
|
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</_simplifyPath>
|
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</plantname_id>
|
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</plantconcept>
|
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</plantconcept_id>
|
|
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</taxondetermination>
|
|
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<verbatimcollectorname>$Index collector</verbatimcollectorname>
|
|
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</taxonoccurrence>
|
|
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</locationevent>
|
|
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</location>
|
|
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</path>
|
|
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</_simplifyPath>
|
|
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</plantname_id>
|
|
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</plantconcept>
|
|
| 167 |
</plantconcept_id>
|
|
| 168 |
</taxondetermination>
|
|
| 169 |
<verbatimcollectorname>$Index collector</verbatimcollectorname>
|
|
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</taxonoccurrence>
|
|
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</locationevent>
|
|
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</location>
|
|
| 173 |
</path>
|
|
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</_simplifyPath>
|
|
| 170 | 175 |
</VegBIEN> |
| 171 | 176 |
Inserted 40 new rows into database |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Added /_simplifyPath:[next=parent_id]/path to root so the returned subplot location will be its parent location if there is no subplot name or ID (indicating that that particular plot did not have subplots). Note that this also causes the parent_id forwarding effect to occur for all other tables containing parent_id, which will help prevent similar issues with subplot events, etc. This will hopefully fix the SALVIAS.plotObservations bug where some organisms did not have a subplot #, causing the subplot location to become NULL and causing the corresponding locationevent rows not to match the locationevent_unique_within_location index filter condition (which requires a parent_id), which caused multiple output table pkeys to be returned for those rows, violating the locationevent_pkeys temp table's primary key.