Revision 4621
Added by Aaron Marcuse-Kubitza almost 12 years ago
test.xml.ref | ||
---|---|---|
1 | 1 |
Put template: |
2 | 2 |
<VegBIEN> |
3 |
<location id="-1"> |
|
4 |
<parent_id> |
|
3 |
<_simplifyPath id="-1"> |
|
4 |
<next>parent_id</next> |
|
5 |
<path> |
|
5 | 6 |
<location> |
6 |
<authorlocationcode>$plot_code</authorlocationcode> |
|
7 |
<sourceaccessioncode>$PLOT_ID</sourceaccessioncode> |
|
8 |
</location> |
|
9 |
</parent_id> |
|
10 |
<authorlocationcode>$subplot</authorlocationcode> |
|
11 |
<locationevent> |
|
12 |
<obsenddate><_date><date><_dateRangeEnd><value>$census_date</value></_dateRangeEnd></date></_date></obsenddate> |
|
13 |
<obsstartdate><_date><date><_dateRangeStart><value>$census_date</value></_dateRangeStart></date></_date></obsstartdate> |
|
14 |
<taxonoccurrence> |
|
15 |
<aggregateoccurrence> |
|
16 |
<count>$no_of_individuals</count> |
|
17 |
<cover>$cover_percent</cover> |
|
18 |
<definedvalue fkey="tablerecord_id"> |
|
19 |
<userdefined_id> |
|
20 |
<userdefined> |
|
21 |
<tablename>aggregateoccurrence</tablename> |
|
22 |
<userdefinedname>censusNo</userdefinedname> |
|
23 |
</userdefined> |
|
24 |
</userdefined_id> |
|
25 |
<definedvalue>$census_no</definedvalue> |
|
26 |
</definedvalue> |
|
27 |
<linecover>$intercept_cm</linecover> |
|
28 |
<plantobservation> |
|
29 |
<collectionnumber>$individual_code</collectionnumber> |
|
30 |
<sourceaccessioncode>$OBSERVATION_ID</sourceaccessioncode> |
|
31 |
<specimenreplicate> |
|
32 |
<catalognumber_dwc> |
|
33 |
<_if name="if indirect voucher"> |
|
34 |
<cond> |
|
35 |
<_eq> |
|
36 |
<right>indirect</right> |
|
37 |
<left>$det_type</left> |
|
38 |
</_eq> |
|
39 |
</cond> |
|
40 |
<else> |
|
41 |
<_alt> |
|
42 |
<1>$coll_number</1> |
|
43 |
<2>$voucher_string</2> |
|
44 |
</_alt> |
|
45 |
</else> |
|
46 |
</_if> |
|
47 |
</catalognumber_dwc> |
|
48 |
</specimenreplicate> |
|
49 |
<stemobservation> |
|
50 |
<basaldiameter>$basal_diam</basaldiameter> |
|
7 |
<parent_id> |
|
8 |
<location> |
|
9 |
<authorlocationcode>$plot_code</authorlocationcode> |
|
10 |
<sourceaccessioncode>$PLOT_ID</sourceaccessioncode> |
|
11 |
</location> |
|
12 |
</parent_id> |
|
13 |
<authorlocationcode>$subplot</authorlocationcode> |
|
14 |
<locationevent> |
|
15 |
<obsenddate><_date><date><_dateRangeEnd><value>$census_date</value></_dateRangeEnd></date></_date></obsenddate> |
|
16 |
<obsstartdate><_date><date><_dateRangeStart><value>$census_date</value></_dateRangeStart></date></_date></obsstartdate> |
|
17 |
<taxonoccurrence> |
|
18 |
<aggregateoccurrence> |
|
19 |
<count>$no_of_individuals</count> |
|
20 |
<cover>$cover_percent</cover> |
|
51 | 21 |
<definedvalue fkey="tablerecord_id"> |
52 | 22 |
<userdefined_id> |
53 | 23 |
<userdefined> |
54 |
<tablename>stemobservation</tablename>
|
|
55 |
<userdefinedname>canopyForm</userdefinedname>
|
|
24 |
<tablename>aggregateoccurrence</tablename>
|
|
25 |
<userdefinedname>censusNo</userdefinedname>
|
|
56 | 26 |
</userdefined> |
57 | 27 |
</userdefined_id> |
58 |
<definedvalue>$stem_canopy_form</definedvalue>
|
|
28 |
<definedvalue>$census_no</definedvalue>
|
|
59 | 29 |
</definedvalue> |
60 |
<definedvalue fkey="tablerecord_id"> |
|
61 |
<userdefined_id> |
|
62 |
<userdefined> |
|
63 |
<tablename>stemobservation</tablename> |
|
64 |
<userdefinedname>canopyPosition</userdefinedname> |
|
65 |
</userdefined> |
|
66 |
</userdefined_id> |
|
67 |
<definedvalue>$stem_canopy_position</definedvalue> |
|
68 |
</definedvalue> |
|
69 |
<definedvalue fkey="tablerecord_id"> |
|
70 |
<userdefined_id> |
|
71 |
<userdefined> |
|
72 |
<tablename>stemobservation</tablename> |
|
73 |
<userdefinedname>lianaInfestation</userdefinedname> |
|
74 |
</userdefined> |
|
75 |
</userdefined_id> |
|
76 |
<definedvalue>$stem_liana_infestation</definedvalue> |
|
77 |
</definedvalue> |
|
78 |
<definedvalue fkey="tablerecord_id"> |
|
79 |
<userdefined_id> |
|
80 |
<userdefined> |
|
81 |
<tablename>stemobservation</tablename> |
|
82 |
<userdefinedname>notes</userdefinedname> |
|
83 |
</userdefined> |
|
84 |
</userdefined_id> |
|
85 |
<definedvalue>$notes</definedvalue> |
|
86 |
</definedvalue> |
|
87 |
<diameterbreastheight>$stem_dbh</diameterbreastheight> |
|
88 |
<height> |
|
89 |
<_alt> |
|
90 |
<1>$stem_height_m</1> |
|
91 |
<2>$height_m</2> |
|
92 |
</_alt> |
|
93 |
</height> |
|
94 |
<heightfirstbranch> |
|
95 |
<_alt> |
|
96 |
<0>$ht_first_branch_m</0> |
|
97 |
<1>$stem_height_first_branch_m</1> |
|
98 |
</_alt> |
|
99 |
</heightfirstbranch> |
|
100 |
<stemtag> |
|
101 |
<iscurrent> |
|
102 |
<_alt> |
|
103 |
<2>true</2> |
|
104 |
<1>false</1> |
|
105 |
</_alt> |
|
106 |
</iscurrent> |
|
107 |
<tag> |
|
108 |
<_alt> |
|
109 |
<1>$tag1</1> |
|
110 |
<2>$stem_tag1</2> |
|
111 |
</_alt> |
|
112 |
</tag> |
|
113 |
</stemtag> |
|
114 |
<stemtag> |
|
115 |
<iscurrent>true</iscurrent> |
|
116 |
<tag> |
|
117 |
<_alt> |
|
118 |
<1>$tag2</1> |
|
119 |
<2>$stem_tag2</2> |
|
120 |
</_alt> |
|
121 |
</tag> |
|
122 |
</stemtag> |
|
123 |
<xposition>$x_position</xposition> |
|
124 |
<yposition>$y_position</yposition> |
|
125 |
</stemobservation> |
|
126 |
</plantobservation> |
|
127 |
</aggregateoccurrence> |
|
128 |
<authortaxoncode>$individual_code</authortaxoncode> |
|
129 |
<growthform> |
|
130 |
<_map> |
|
131 |
<T>tree</T> |
|
132 |
<Arbol>tree</Arbol> |
|
133 |
<palm>tree</palm> |
|
134 |
<H>hemiepiphyte</H> |
|
135 |
<Hemiepífito>hemiepiphyte</Hemiepífito> |
|
136 |
<L>liana</L> |
|
137 |
<l>liana</l> |
|
138 |
<L?>liana</L?> |
|
139 |
<Liana>liana</Liana> |
|
140 |
<E>epiphyte</E> |
|
141 |
<S>shrub</S> |
|
142 |
<Hb>herb</Hb> |
|
143 |
<vine-herbaceous>vine</vine-herbaceous> |
|
144 |
<graminoid>grass</graminoid> |
|
145 |
<rosette>forb</rosette> |
|
146 |
<*>*</*> |
|
147 |
<value>$habit</value> |
|
148 |
</_map> |
|
149 |
</growthform> |
|
150 |
<sourceaccessioncode>$OBSERVATION_ID</sourceaccessioncode> |
|
151 |
<taxondetermination> |
|
152 |
<plantconcept_id> |
|
153 |
<plantconcept> |
|
154 |
<plantname_id> |
|
155 |
<_simplifyPath> |
|
156 |
<next>parent_id</next> |
|
157 |
<path> |
|
158 |
<plantname> |
|
159 |
<rank>binomial</rank> |
|
160 |
<parent_id> |
|
30 |
<linecover>$intercept_cm</linecover> |
|
31 |
<plantobservation> |
|
32 |
<collectionnumber>$individual_code</collectionnumber> |
|
33 |
<sourceaccessioncode>$OBSERVATION_ID</sourceaccessioncode> |
|
34 |
<specimenreplicate> |
|
35 |
<catalognumber_dwc> |
|
36 |
<_if name="if indirect voucher"> |
|
37 |
<cond> |
|
38 |
<_eq> |
|
39 |
<right>indirect</right> |
|
40 |
<left>$det_type</left> |
|
41 |
</_eq> |
|
42 |
</cond> |
|
43 |
<else> |
|
44 |
<_alt> |
|
45 |
<1>$coll_number</1> |
|
46 |
<2>$voucher_string</2> |
|
47 |
</_alt> |
|
48 |
</else> |
|
49 |
</_if> |
|
50 |
</catalognumber_dwc> |
|
51 |
</specimenreplicate> |
|
52 |
<stemobservation> |
|
53 |
<basaldiameter>$basal_diam</basaldiameter> |
|
54 |
<definedvalue fkey="tablerecord_id"> |
|
55 |
<userdefined_id> |
|
56 |
<userdefined> |
|
57 |
<tablename>stemobservation</tablename> |
|
58 |
<userdefinedname>canopyForm</userdefinedname> |
|
59 |
</userdefined> |
|
60 |
</userdefined_id> |
|
61 |
<definedvalue>$stem_canopy_form</definedvalue> |
|
62 |
</definedvalue> |
|
63 |
<definedvalue fkey="tablerecord_id"> |
|
64 |
<userdefined_id> |
|
65 |
<userdefined> |
|
66 |
<tablename>stemobservation</tablename> |
|
67 |
<userdefinedname>canopyPosition</userdefinedname> |
|
68 |
</userdefined> |
|
69 |
</userdefined_id> |
|
70 |
<definedvalue>$stem_canopy_position</definedvalue> |
|
71 |
</definedvalue> |
|
72 |
<definedvalue fkey="tablerecord_id"> |
|
73 |
<userdefined_id> |
|
74 |
<userdefined> |
|
75 |
<tablename>stemobservation</tablename> |
|
76 |
<userdefinedname>lianaInfestation</userdefinedname> |
|
77 |
</userdefined> |
|
78 |
</userdefined_id> |
|
79 |
<definedvalue>$stem_liana_infestation</definedvalue> |
|
80 |
</definedvalue> |
|
81 |
<definedvalue fkey="tablerecord_id"> |
|
82 |
<userdefined_id> |
|
83 |
<userdefined> |
|
84 |
<tablename>stemobservation</tablename> |
|
85 |
<userdefinedname>notes</userdefinedname> |
|
86 |
</userdefined> |
|
87 |
</userdefined_id> |
|
88 |
<definedvalue>$notes</definedvalue> |
|
89 |
</definedvalue> |
|
90 |
<diameterbreastheight>$stem_dbh</diameterbreastheight> |
|
91 |
<height> |
|
92 |
<_alt> |
|
93 |
<1>$stem_height_m</1> |
|
94 |
<2>$height_m</2> |
|
95 |
</_alt> |
|
96 |
</height> |
|
97 |
<heightfirstbranch> |
|
98 |
<_alt> |
|
99 |
<0>$ht_first_branch_m</0> |
|
100 |
<1>$stem_height_first_branch_m</1> |
|
101 |
</_alt> |
|
102 |
</heightfirstbranch> |
|
103 |
<stemtag> |
|
104 |
<iscurrent> |
|
105 |
<_alt> |
|
106 |
<2>true</2> |
|
107 |
<1>false</1> |
|
108 |
</_alt> |
|
109 |
</iscurrent> |
|
110 |
<tag> |
|
111 |
<_alt> |
|
112 |
<1>$tag1</1> |
|
113 |
<2>$stem_tag1</2> |
|
114 |
</_alt> |
|
115 |
</tag> |
|
116 |
</stemtag> |
|
117 |
<stemtag> |
|
118 |
<iscurrent>true</iscurrent> |
|
119 |
<tag> |
|
120 |
<_alt> |
|
121 |
<1>$tag2</1> |
|
122 |
<2>$stem_tag2</2> |
|
123 |
</_alt> |
|
124 |
</tag> |
|
125 |
</stemtag> |
|
126 |
<xposition>$x_position</xposition> |
|
127 |
<yposition>$y_position</yposition> |
|
128 |
</stemobservation> |
|
129 |
</plantobservation> |
|
130 |
</aggregateoccurrence> |
|
131 |
<authortaxoncode>$individual_code</authortaxoncode> |
|
132 |
<growthform> |
|
133 |
<_map> |
|
134 |
<T>tree</T> |
|
135 |
<Arbol>tree</Arbol> |
|
136 |
<palm>tree</palm> |
|
137 |
<H>hemiepiphyte</H> |
|
138 |
<Hemiepífito>hemiepiphyte</Hemiepífito> |
|
139 |
<L>liana</L> |
|
140 |
<l>liana</l> |
|
141 |
<L?>liana</L?> |
|
142 |
<Liana>liana</Liana> |
|
143 |
<E>epiphyte</E> |
|
144 |
<S>shrub</S> |
|
145 |
<Hb>herb</Hb> |
|
146 |
<vine-herbaceous>vine</vine-herbaceous> |
|
147 |
<graminoid>grass</graminoid> |
|
148 |
<rosette>forb</rosette> |
|
149 |
<*>*</*> |
|
150 |
<value>$habit</value> |
|
151 |
</_map> |
|
152 |
</growthform> |
|
153 |
<sourceaccessioncode>$OBSERVATION_ID</sourceaccessioncode> |
|
154 |
<taxondetermination> |
|
155 |
<plantconcept_id> |
|
156 |
<plantconcept> |
|
157 |
<plantname_id> |
|
158 |
<_simplifyPath> |
|
159 |
<next>parent_id</next> |
|
160 |
<path> |
|
161 | 161 |
<plantname> |
162 |
<rank>authority</rank> |
|
163 |
<plantname>$specific_authority</plantname> |
|
162 |
<rank>binomial</rank> |
|
164 | 163 |
<parent_id> |
165 | 164 |
<plantname> |
166 |
<rank>subspecies</rank> |
|
167 |
<plantname> |
|
168 |
<_name> |
|
169 |
<first>$infra_rank_1</first> |
|
170 |
<last>$infra_ep_1</last> |
|
171 |
</_name> |
|
172 |
</plantname> |
|
165 |
<rank>authority</rank> |
|
166 |
<plantname>$specific_authority</plantname> |
|
173 | 167 |
<parent_id> |
174 | 168 |
<plantname> |
175 |
<rank>species</rank> |
|
176 |
<plantname>$specific_epithet</plantname> |
|
169 |
<rank>subspecies</rank> |
|
170 |
<plantname> |
|
171 |
<_name> |
|
172 |
<first>$infra_rank_1</first> |
|
173 |
<last>$infra_ep_1</last> |
|
174 |
</_name> |
|
175 |
</plantname> |
|
177 | 176 |
<parent_id> |
178 | 177 |
<plantname> |
179 |
<rank>genus</rank>
|
|
180 |
<plantname>$genus</plantname>
|
|
178 |
<rank>species</rank>
|
|
179 |
<plantname>$specific_epithet</plantname>
|
|
181 | 180 |
<parent_id> |
182 | 181 |
<plantname> |
183 |
<rank>family</rank> |
|
184 |
<plantname>$family</plantname> |
|
182 |
<rank>genus</rank> |
|
183 |
<plantname>$genus</plantname> |
|
184 |
<parent_id> |
|
185 |
<plantname> |
|
186 |
<rank>family</rank> |
|
187 |
<plantname>$family</plantname> |
|
188 |
</plantname> |
|
189 |
</parent_id> |
|
185 | 190 |
</plantname> |
186 | 191 |
</parent_id> |
187 | 192 |
</plantname> |
... | ... | |
191 | 196 |
</plantname> |
192 | 197 |
</parent_id> |
193 | 198 |
</plantname> |
194 |
</parent_id> |
|
195 |
</plantname> |
|
196 |
</path> |
|
197 |
</_simplifyPath> |
|
198 |
</plantname_id> |
|
199 |
</plantconcept> |
|
200 |
</plantconcept_id> |
|
201 |
<taxonfit>$cf_aff</taxonfit> |
|
202 |
</taxondetermination> |
|
203 |
<taxondetermination> |
|
204 |
<isoriginal>true</isoriginal> |
|
205 |
<plantconcept_id> |
|
206 |
<plantconcept> |
|
207 |
<plantname_id> |
|
208 |
<_simplifyPath> |
|
209 |
<next>parent_id</next> |
|
210 |
<path> |
|
211 |
<plantname> |
|
212 |
<rank>binomial</rank> |
|
213 |
<parent_id> |
|
199 |
</path> |
|
200 |
</_simplifyPath> |
|
201 |
</plantname_id> |
|
202 |
</plantconcept> |
|
203 |
</plantconcept_id> |
|
204 |
<taxonfit>$cf_aff</taxonfit> |
|
205 |
</taxondetermination> |
|
206 |
<taxondetermination> |
|
207 |
<isoriginal>true</isoriginal> |
|
208 |
<plantconcept_id> |
|
209 |
<plantconcept> |
|
210 |
<plantname_id> |
|
211 |
<_simplifyPath> |
|
212 |
<next>parent_id</next> |
|
213 |
<path> |
|
214 | 214 |
<plantname> |
215 |
<rank>authority</rank>
|
|
215 |
<rank>binomial</rank>
|
|
216 | 216 |
<parent_id> |
217 | 217 |
<plantname> |
218 |
<rank>subspecies</rank>
|
|
218 |
<rank>authority</rank>
|
|
219 | 219 |
<parent_id> |
220 | 220 |
<plantname> |
221 |
<rank>species</rank> |
|
222 |
<plantname>$orig_species</plantname> |
|
221 |
<rank>subspecies</rank> |
|
223 | 222 |
<parent_id> |
224 | 223 |
<plantname> |
225 |
<rank>genus</rank> |
|
224 |
<rank>species</rank> |
|
225 |
<plantname>$orig_species</plantname> |
|
226 | 226 |
<parent_id> |
227 | 227 |
<plantname> |
228 |
<rank>family</rank> |
|
229 |
<plantname>$orig_family</plantname> |
|
228 |
<rank>genus</rank> |
|
229 |
<parent_id> |
|
230 |
<plantname> |
|
231 |
<rank>family</rank> |
|
232 |
<plantname>$orig_family</plantname> |
|
233 |
</plantname> |
|
234 |
</parent_id> |
|
230 | 235 |
</plantname> |
231 | 236 |
</parent_id> |
232 | 237 |
</plantname> |
... | ... | |
236 | 241 |
</plantname> |
237 | 242 |
</parent_id> |
238 | 243 |
</plantname> |
239 |
</parent_id>
|
|
240 |
</plantname>
|
|
241 |
</path>
|
|
242 |
</_simplifyPath>
|
|
243 |
</plantname_id>
|
|
244 |
</plantconcept>
|
|
245 |
</plantconcept_id>
|
|
246 |
</taxondetermination>
|
|
247 |
<verbatimcollectorname>
|
|
248 |
<_name>
|
|
249 |
<first>$coll_firstname</first>
|
|
250 |
<last>$coll_lastname</last>
|
|
251 |
</_name>
|
|
252 |
</verbatimcollectorname>
|
|
253 |
<voucher>
|
|
254 |
<specimenreplicate_id>
|
|
255 |
<specimenreplicate>
|
|
256 |
<catalognumber_dwc>
|
|
257 |
<_if name="if indirect voucher">
|
|
258 |
<cond>
|
|
259 |
<_eq>
|
|
260 |
<right>indirect</right>
|
|
261 |
<left>$det_type</left>
|
|
262 |
</_eq>
|
|
263 |
</cond>
|
|
264 |
<then>
|
|
265 |
<_alt>
|
|
266 |
<1>$coll_number</1>
|
|
267 |
<2>$voucher_string</2>
|
|
268 |
</_alt>
|
|
269 |
</then>
|
|
270 |
</_if>
|
|
271 |
</catalognumber_dwc>
|
|
272 |
</specimenreplicate>
|
|
273 |
</specimenreplicate_id>
|
|
274 |
</voucher>
|
|
275 |
</taxonoccurrence>
|
|
276 |
</locationevent>
|
|
277 |
</location>
|
|
244 |
</path>
|
|
245 |
</_simplifyPath>
|
|
246 |
</plantname_id>
|
|
247 |
</plantconcept>
|
|
248 |
</plantconcept_id>
|
|
249 |
</taxondetermination>
|
|
250 |
<verbatimcollectorname>
|
|
251 |
<_name>
|
|
252 |
<first>$coll_firstname</first>
|
|
253 |
<last>$coll_lastname</last>
|
|
254 |
</_name>
|
|
255 |
</verbatimcollectorname>
|
|
256 |
<voucher>
|
|
257 |
<specimenreplicate_id>
|
|
258 |
<specimenreplicate>
|
|
259 |
<catalognumber_dwc>
|
|
260 |
<_if name="if indirect voucher">
|
|
261 |
<cond>
|
|
262 |
<_eq>
|
|
263 |
<right>indirect</right>
|
|
264 |
<left>$det_type</left>
|
|
265 |
</_eq>
|
|
266 |
</cond>
|
|
267 |
<then>
|
|
268 |
<_alt>
|
|
269 |
<1>$coll_number</1>
|
|
270 |
<2>$voucher_string</2>
|
|
271 |
</_alt>
|
|
272 |
</then>
|
|
273 |
</_if>
|
|
274 |
</catalognumber_dwc>
|
|
275 |
</specimenreplicate>
|
|
276 |
</specimenreplicate_id>
|
|
277 |
</voucher>
|
|
278 |
</taxonoccurrence>
|
|
279 |
</locationevent>
|
|
280 |
</location>
|
|
281 |
</path>
|
|
282 |
</_simplifyPath>
|
|
278 | 283 |
</VegBIEN> |
279 | 284 |
Inserted 51 new rows into database |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Added /_simplifyPath:[next=parent_id]/path to root so the returned subplot location will be its parent location if there is no subplot name or ID (indicating that that particular plot did not have subplots). Note that this also causes the parent_id forwarding effect to occur for all other tables containing parent_id, which will help prevent similar issues with subplot events, etc. This will hopefully fix the SALVIAS.plotObservations bug where some organisms did not have a subplot #, causing the subplot location to become NULL and causing the corresponding locationevent rows not to match the locationevent_unique_within_location index filter condition (which requires a parent_id), which caused multiple output table pkeys to be returned for those rows, violating the locationevent_pkeys temp table's primary key.