Revision 4621
Added by Aaron Marcuse-Kubitza almost 12 years ago
| test.xml.ref | ||
|---|---|---|
| 1 | 1 |
Put template: |
| 2 | 2 |
<VegBIEN> |
| 3 |
<location id="-1"> |
|
| 4 |
<parent_id> |
|
| 3 |
<_simplifyPath id="-1"> |
|
| 4 |
<next>parent_id</next> |
|
| 5 |
<path> |
|
| 5 | 6 |
<location> |
| 6 |
<authorlocationcode>$PlotCode</authorlocationcode> |
|
| 7 |
<sourceaccessioncode>$PlotID</sourceaccessioncode> |
|
| 8 |
</location> |
|
| 9 |
</parent_id> |
|
| 10 |
<authorlocationcode>$Line</authorlocationcode> |
|
| 11 |
<locationevent> |
|
| 12 |
<obsenddate><_date><date><_dateRangeEnd><value>$census_date</value></_dateRangeEnd></date></_date></obsenddate> |
|
| 13 |
<obsstartdate><_date><date><_dateRangeStart><value>$census_date</value></_dateRangeStart></date></_date></obsstartdate> |
|
| 14 |
<taxonoccurrence> |
|
| 15 |
<aggregateoccurrence> |
|
| 16 |
<count>$NoInd</count> |
|
| 17 |
<cover>$cover_percent</cover> |
|
| 18 |
<definedvalue fkey="tablerecord_id"> |
|
| 19 |
<userdefined_id> |
|
| 20 |
<userdefined> |
|
| 21 |
<tablename>aggregateoccurrence</tablename> |
|
| 22 |
<userdefinedname>censusNo</userdefinedname> |
|
| 23 |
</userdefined> |
|
| 24 |
</userdefined_id> |
|
| 25 |
<definedvalue>$census_no</definedvalue> |
|
| 26 |
</definedvalue> |
|
| 27 |
<linecover>$intercept_cm</linecover> |
|
| 28 |
<notes>$Notes</notes> |
|
| 29 |
<plantobservation> |
|
| 30 |
<collectionnumber>$Ind</collectionnumber> |
|
| 31 |
<sourceaccessioncode>$PlotObsID</sourceaccessioncode> |
|
| 32 |
<specimenreplicate> |
|
| 33 |
<catalognumber_dwc> |
|
| 34 |
<_if name="if indirect voucher"> |
|
| 35 |
<cond> |
|
| 36 |
<_eq> |
|
| 37 |
<right>indirect</right> |
|
| 38 |
<left>$DetType</left> |
|
| 39 |
</_eq> |
|
| 40 |
</cond> |
|
| 41 |
<else> |
|
| 42 |
<_alt> |
|
| 43 |
<1>$coll_number</1> |
|
| 44 |
<2>$SourceVoucher</2> |
|
| 45 |
</_alt> |
|
| 46 |
</else> |
|
| 47 |
</_if> |
|
| 48 |
</catalognumber_dwc> |
|
| 49 |
</specimenreplicate> |
|
| 50 |
<stemobservation> |
|
| 7 |
<parent_id> |
|
| 8 |
<location> |
|
| 9 |
<authorlocationcode>$PlotCode</authorlocationcode> |
|
| 10 |
<sourceaccessioncode>$PlotID</sourceaccessioncode> |
|
| 11 |
</location> |
|
| 12 |
</parent_id> |
|
| 13 |
<authorlocationcode>$Line</authorlocationcode> |
|
| 14 |
<locationevent> |
|
| 15 |
<obsenddate><_date><date><_dateRangeEnd><value>$census_date</value></_dateRangeEnd></date></_date></obsenddate> |
|
| 16 |
<obsstartdate><_date><date><_dateRangeStart><value>$census_date</value></_dateRangeStart></date></_date></obsstartdate> |
|
| 17 |
<taxonoccurrence> |
|
| 18 |
<aggregateoccurrence> |
|
| 19 |
<count>$NoInd</count> |
|
| 20 |
<cover>$cover_percent</cover> |
|
| 51 | 21 |
<definedvalue fkey="tablerecord_id"> |
| 52 | 22 |
<userdefined_id> |
| 53 | 23 |
<userdefined> |
| 54 |
<tablename>stemobservation</tablename>
|
|
| 55 |
<userdefinedname>canopyForm</userdefinedname>
|
|
| 24 |
<tablename>aggregateoccurrence</tablename>
|
|
| 25 |
<userdefinedname>censusNo</userdefinedname>
|
|
| 56 | 26 |
</userdefined> |
| 57 | 27 |
</userdefined_id> |
| 58 |
<definedvalue>$canopy_form</definedvalue>
|
|
| 28 |
<definedvalue>$census_no</definedvalue>
|
|
| 59 | 29 |
</definedvalue> |
| 60 |
<definedvalue fkey="tablerecord_id"> |
|
| 61 |
<userdefined_id> |
|
| 62 |
<userdefined> |
|
| 63 |
<tablename>stemobservation</tablename> |
|
| 64 |
<userdefinedname>canopyPosition</userdefinedname> |
|
| 65 |
</userdefined> |
|
| 66 |
</userdefined_id> |
|
| 67 |
<definedvalue>$canopy_position</definedvalue> |
|
| 68 |
</definedvalue> |
|
| 69 |
<definedvalue fkey="tablerecord_id"> |
|
| 70 |
<userdefined_id> |
|
| 71 |
<userdefined> |
|
| 72 |
<tablename>stemobservation</tablename> |
|
| 73 |
<userdefinedname>lianaInfestation</userdefinedname> |
|
| 74 |
</userdefined> |
|
| 75 |
</userdefined_id> |
|
| 76 |
<definedvalue>$liana_infestation</definedvalue> |
|
| 77 |
</definedvalue> |
|
| 78 |
<diameterbreastheight>$temp_dbh</diameterbreastheight> |
|
| 79 |
<height>$height_m</height> |
|
| 80 |
<heightfirstbranch>$ht_first_branch_m</heightfirstbranch> |
|
| 81 |
<stemtag> |
|
| 82 |
<iscurrent> |
|
| 83 |
<_alt> |
|
| 84 |
<2>true</2> |
|
| 85 |
<1>false</1> |
|
| 86 |
</_alt> |
|
| 87 |
</iscurrent> |
|
| 88 |
<tag>$tag1</tag> |
|
| 89 |
</stemtag> |
|
| 90 |
<stemtag> |
|
| 91 |
<iscurrent>true</iscurrent> |
|
| 92 |
<tag>$tag2</tag> |
|
| 93 |
</stemtag> |
|
| 94 |
<xposition>$x_position</xposition> |
|
| 95 |
<yposition>$y_position</yposition> |
|
| 96 |
</stemobservation> |
|
| 97 |
</plantobservation> |
|
| 98 |
</aggregateoccurrence> |
|
| 99 |
<authortaxoncode>$Ind</authortaxoncode> |
|
| 100 |
<growthform> |
|
| 101 |
<_map> |
|
| 102 |
<T>tree</T> |
|
| 103 |
<Arbol>tree</Arbol> |
|
| 104 |
<palm>tree</palm> |
|
| 105 |
<H>hemiepiphyte</H> |
|
| 106 |
<Hemiepífito>hemiepiphyte</Hemiepífito> |
|
| 107 |
<L>liana</L> |
|
| 108 |
<l>liana</l> |
|
| 109 |
<L?>liana</L?> |
|
| 110 |
<Liana>liana</Liana> |
|
| 111 |
<E>epiphyte</E> |
|
| 112 |
<S>shrub</S> |
|
| 113 |
<Hb>herb</Hb> |
|
| 114 |
<vine-herbaceous>vine</vine-herbaceous> |
|
| 115 |
<graminoid>grass</graminoid> |
|
| 116 |
<rosette>forb</rosette> |
|
| 117 |
<*>*</*> |
|
| 118 |
<value>$Habit</value> |
|
| 119 |
</_map> |
|
| 120 |
</growthform> |
|
| 121 |
<sourceaccessioncode>$PlotObsID</sourceaccessioncode> |
|
| 122 |
<taxondetermination> |
|
| 123 |
<plantconcept_id> |
|
| 124 |
<plantconcept> |
|
| 125 |
<plantname_id> |
|
| 126 |
<_simplifyPath> |
|
| 127 |
<next>parent_id</next> |
|
| 128 |
<path> |
|
| 129 |
<plantname> |
|
| 130 |
<rank>binomial</rank> |
|
| 131 |
<parent_id> |
|
| 30 |
<linecover>$intercept_cm</linecover> |
|
| 31 |
<notes>$Notes</notes> |
|
| 32 |
<plantobservation> |
|
| 33 |
<collectionnumber>$Ind</collectionnumber> |
|
| 34 |
<sourceaccessioncode>$PlotObsID</sourceaccessioncode> |
|
| 35 |
<specimenreplicate> |
|
| 36 |
<catalognumber_dwc> |
|
| 37 |
<_if name="if indirect voucher"> |
|
| 38 |
<cond> |
|
| 39 |
<_eq> |
|
| 40 |
<right>indirect</right> |
|
| 41 |
<left>$DetType</left> |
|
| 42 |
</_eq> |
|
| 43 |
</cond> |
|
| 44 |
<else> |
|
| 45 |
<_alt> |
|
| 46 |
<1>$coll_number</1> |
|
| 47 |
<2>$SourceVoucher</2> |
|
| 48 |
</_alt> |
|
| 49 |
</else> |
|
| 50 |
</_if> |
|
| 51 |
</catalognumber_dwc> |
|
| 52 |
</specimenreplicate> |
|
| 53 |
<stemobservation> |
|
| 54 |
<definedvalue fkey="tablerecord_id"> |
|
| 55 |
<userdefined_id> |
|
| 56 |
<userdefined> |
|
| 57 |
<tablename>stemobservation</tablename> |
|
| 58 |
<userdefinedname>canopyForm</userdefinedname> |
|
| 59 |
</userdefined> |
|
| 60 |
</userdefined_id> |
|
| 61 |
<definedvalue>$canopy_form</definedvalue> |
|
| 62 |
</definedvalue> |
|
| 63 |
<definedvalue fkey="tablerecord_id"> |
|
| 64 |
<userdefined_id> |
|
| 65 |
<userdefined> |
|
| 66 |
<tablename>stemobservation</tablename> |
|
| 67 |
<userdefinedname>canopyPosition</userdefinedname> |
|
| 68 |
</userdefined> |
|
| 69 |
</userdefined_id> |
|
| 70 |
<definedvalue>$canopy_position</definedvalue> |
|
| 71 |
</definedvalue> |
|
| 72 |
<definedvalue fkey="tablerecord_id"> |
|
| 73 |
<userdefined_id> |
|
| 74 |
<userdefined> |
|
| 75 |
<tablename>stemobservation</tablename> |
|
| 76 |
<userdefinedname>lianaInfestation</userdefinedname> |
|
| 77 |
</userdefined> |
|
| 78 |
</userdefined_id> |
|
| 79 |
<definedvalue>$liana_infestation</definedvalue> |
|
| 80 |
</definedvalue> |
|
| 81 |
<diameterbreastheight>$temp_dbh</diameterbreastheight> |
|
| 82 |
<height>$height_m</height> |
|
| 83 |
<heightfirstbranch>$ht_first_branch_m</heightfirstbranch> |
|
| 84 |
<stemtag> |
|
| 85 |
<iscurrent> |
|
| 86 |
<_alt> |
|
| 87 |
<2>true</2> |
|
| 88 |
<1>false</1> |
|
| 89 |
</_alt> |
|
| 90 |
</iscurrent> |
|
| 91 |
<tag>$tag1</tag> |
|
| 92 |
</stemtag> |
|
| 93 |
<stemtag> |
|
| 94 |
<iscurrent>true</iscurrent> |
|
| 95 |
<tag>$tag2</tag> |
|
| 96 |
</stemtag> |
|
| 97 |
<xposition>$x_position</xposition> |
|
| 98 |
<yposition>$y_position</yposition> |
|
| 99 |
</stemobservation> |
|
| 100 |
</plantobservation> |
|
| 101 |
</aggregateoccurrence> |
|
| 102 |
<authortaxoncode>$Ind</authortaxoncode> |
|
| 103 |
<growthform> |
|
| 104 |
<_map> |
|
| 105 |
<T>tree</T> |
|
| 106 |
<Arbol>tree</Arbol> |
|
| 107 |
<palm>tree</palm> |
|
| 108 |
<H>hemiepiphyte</H> |
|
| 109 |
<Hemiepífito>hemiepiphyte</Hemiepífito> |
|
| 110 |
<L>liana</L> |
|
| 111 |
<l>liana</l> |
|
| 112 |
<L?>liana</L?> |
|
| 113 |
<Liana>liana</Liana> |
|
| 114 |
<E>epiphyte</E> |
|
| 115 |
<S>shrub</S> |
|
| 116 |
<Hb>herb</Hb> |
|
| 117 |
<vine-herbaceous>vine</vine-herbaceous> |
|
| 118 |
<graminoid>grass</graminoid> |
|
| 119 |
<rosette>forb</rosette> |
|
| 120 |
<*>*</*> |
|
| 121 |
<value>$Habit</value> |
|
| 122 |
</_map> |
|
| 123 |
</growthform> |
|
| 124 |
<sourceaccessioncode>$PlotObsID</sourceaccessioncode> |
|
| 125 |
<taxondetermination> |
|
| 126 |
<plantconcept_id> |
|
| 127 |
<plantconcept> |
|
| 128 |
<plantname_id> |
|
| 129 |
<_simplifyPath> |
|
| 130 |
<next>parent_id</next> |
|
| 131 |
<path> |
|
| 132 | 132 |
<plantname> |
| 133 |
<rank>authority</rank> |
|
| 134 |
<plantname>$auth</plantname> |
|
| 133 |
<rank>binomial</rank> |
|
| 135 | 134 |
<parent_id> |
| 136 | 135 |
<plantname> |
| 137 |
<rank>subspecies</rank> |
|
| 138 |
<plantname> |
|
| 139 |
<_name> |
|
| 140 |
<first>$infra_rank_1</first> |
|
| 141 |
<last>$infra_ep_1</last> |
|
| 142 |
</_name> |
|
| 143 |
</plantname> |
|
| 136 |
<rank>authority</rank> |
|
| 137 |
<plantname>$auth</plantname> |
|
| 144 | 138 |
<parent_id> |
| 145 | 139 |
<plantname> |
| 146 |
<rank>species</rank> |
|
| 147 |
<plantname>$Species</plantname> |
|
| 140 |
<rank>subspecies</rank> |
|
| 141 |
<plantname> |
|
| 142 |
<_name> |
|
| 143 |
<first>$infra_rank_1</first> |
|
| 144 |
<last>$infra_ep_1</last> |
|
| 145 |
</_name> |
|
| 146 |
</plantname> |
|
| 148 | 147 |
<parent_id> |
| 149 | 148 |
<plantname> |
| 150 |
<rank>genus</rank>
|
|
| 151 |
<plantname>$Genus</plantname>
|
|
| 149 |
<rank>species</rank>
|
|
| 150 |
<plantname>$Species</plantname>
|
|
| 152 | 151 |
<parent_id> |
| 153 | 152 |
<plantname> |
| 154 |
<rank>family</rank> |
|
| 155 |
<plantname>$Family</plantname> |
|
| 153 |
<rank>genus</rank> |
|
| 154 |
<plantname>$Genus</plantname> |
|
| 155 |
<parent_id> |
|
| 156 |
<plantname> |
|
| 157 |
<rank>family</rank> |
|
| 158 |
<plantname>$Family</plantname> |
|
| 159 |
</plantname> |
|
| 160 |
</parent_id> |
|
| 156 | 161 |
</plantname> |
| 157 | 162 |
</parent_id> |
| 158 | 163 |
</plantname> |
| ... | ... | |
| 162 | 167 |
</plantname> |
| 163 | 168 |
</parent_id> |
| 164 | 169 |
</plantname> |
| 165 |
</parent_id> |
|
| 166 |
</plantname> |
|
| 167 |
</path> |
|
| 168 |
</_simplifyPath> |
|
| 169 |
</plantname_id> |
|
| 170 |
</plantconcept> |
|
| 171 |
</plantconcept_id> |
|
| 172 |
<taxonfit>$cfaff</taxonfit> |
|
| 173 |
</taxondetermination> |
|
| 174 |
<taxondetermination> |
|
| 175 |
<isoriginal>true</isoriginal> |
|
| 176 |
<plantconcept_id> |
|
| 177 |
<plantconcept> |
|
| 178 |
<plantname_id> |
|
| 179 |
<_simplifyPath> |
|
| 180 |
<next>parent_id</next> |
|
| 181 |
<path> |
|
| 182 |
<plantname> |
|
| 183 |
<rank>binomial</rank> |
|
| 184 |
<parent_id> |
|
| 170 |
</path> |
|
| 171 |
</_simplifyPath> |
|
| 172 |
</plantname_id> |
|
| 173 |
</plantconcept> |
|
| 174 |
</plantconcept_id> |
|
| 175 |
<taxonfit>$cfaff</taxonfit> |
|
| 176 |
</taxondetermination> |
|
| 177 |
<taxondetermination> |
|
| 178 |
<isoriginal>true</isoriginal> |
|
| 179 |
<plantconcept_id> |
|
| 180 |
<plantconcept> |
|
| 181 |
<plantname_id> |
|
| 182 |
<_simplifyPath> |
|
| 183 |
<next>parent_id</next> |
|
| 184 |
<path> |
|
| 185 | 185 |
<plantname> |
| 186 |
<rank>authority</rank>
|
|
| 186 |
<rank>binomial</rank>
|
|
| 187 | 187 |
<parent_id> |
| 188 | 188 |
<plantname> |
| 189 |
<rank>subspecies</rank>
|
|
| 189 |
<rank>authority</rank>
|
|
| 190 | 190 |
<parent_id> |
| 191 | 191 |
<plantname> |
| 192 |
<rank>species</rank> |
|
| 193 |
<plantname>$OrigSpecies</plantname> |
|
| 192 |
<rank>subspecies</rank> |
|
| 194 | 193 |
<parent_id> |
| 195 | 194 |
<plantname> |
| 196 |
<rank>genus</rank>
|
|
| 197 |
<plantname>$OrigGenus</plantname>
|
|
| 195 |
<rank>species</rank>
|
|
| 196 |
<plantname>$OrigSpecies</plantname>
|
|
| 198 | 197 |
<parent_id> |
| 199 | 198 |
<plantname> |
| 200 |
<rank>family</rank> |
|
| 201 |
<plantname>$OrigFamily</plantname> |
|
| 199 |
<rank>genus</rank> |
|
| 200 |
<plantname>$OrigGenus</plantname> |
|
| 201 |
<parent_id> |
|
| 202 |
<plantname> |
|
| 203 |
<rank>family</rank> |
|
| 204 |
<plantname>$OrigFamily</plantname> |
|
| 205 |
</plantname> |
|
| 206 |
</parent_id> |
|
| 202 | 207 |
</plantname> |
| 203 | 208 |
</parent_id> |
| 204 | 209 |
</plantname> |
| ... | ... | |
| 208 | 213 |
</plantname> |
| 209 | 214 |
</parent_id> |
| 210 | 215 |
</plantname> |
| 211 |
</parent_id>
|
|
| 212 |
</plantname>
|
|
| 213 |
</path>
|
|
| 214 |
</_simplifyPath>
|
|
| 215 |
</plantname_id>
|
|
| 216 |
</plantconcept>
|
|
| 217 |
</plantconcept_id>
|
|
| 218 |
</taxondetermination>
|
|
| 219 |
<verbatimcollectorname>
|
|
| 220 |
<_name>
|
|
| 221 |
<first>$coll_firstname</first>
|
|
| 222 |
<last>$coll_lastname</last>
|
|
| 223 |
</_name>
|
|
| 224 |
</verbatimcollectorname>
|
|
| 225 |
<voucher>
|
|
| 226 |
<specimenreplicate_id>
|
|
| 227 |
<specimenreplicate>
|
|
| 228 |
<catalognumber_dwc>
|
|
| 229 |
<_if name="if indirect voucher">
|
|
| 230 |
<cond>
|
|
| 231 |
<_eq>
|
|
| 232 |
<right>indirect</right>
|
|
| 233 |
<left>$DetType</left>
|
|
| 234 |
</_eq>
|
|
| 235 |
</cond>
|
|
| 236 |
<then>
|
|
| 237 |
<_alt>
|
|
| 238 |
<1>$coll_number</1>
|
|
| 239 |
<2>$SourceVoucher</2>
|
|
| 240 |
</_alt>
|
|
| 241 |
</then>
|
|
| 242 |
</_if>
|
|
| 243 |
</catalognumber_dwc>
|
|
| 244 |
</specimenreplicate>
|
|
| 245 |
</specimenreplicate_id>
|
|
| 246 |
</voucher>
|
|
| 247 |
</taxonoccurrence>
|
|
| 248 |
</locationevent>
|
|
| 249 |
</location>
|
|
| 216 |
</path>
|
|
| 217 |
</_simplifyPath>
|
|
| 218 |
</plantname_id>
|
|
| 219 |
</plantconcept>
|
|
| 220 |
</plantconcept_id>
|
|
| 221 |
</taxondetermination>
|
|
| 222 |
<verbatimcollectorname>
|
|
| 223 |
<_name>
|
|
| 224 |
<first>$coll_firstname</first>
|
|
| 225 |
<last>$coll_lastname</last>
|
|
| 226 |
</_name>
|
|
| 227 |
</verbatimcollectorname>
|
|
| 228 |
<voucher>
|
|
| 229 |
<specimenreplicate_id>
|
|
| 230 |
<specimenreplicate>
|
|
| 231 |
<catalognumber_dwc>
|
|
| 232 |
<_if name="if indirect voucher">
|
|
| 233 |
<cond>
|
|
| 234 |
<_eq>
|
|
| 235 |
<right>indirect</right>
|
|
| 236 |
<left>$DetType</left>
|
|
| 237 |
</_eq>
|
|
| 238 |
</cond>
|
|
| 239 |
<then>
|
|
| 240 |
<_alt>
|
|
| 241 |
<1>$coll_number</1>
|
|
| 242 |
<2>$SourceVoucher</2>
|
|
| 243 |
</_alt>
|
|
| 244 |
</then>
|
|
| 245 |
</_if>
|
|
| 246 |
</catalognumber_dwc>
|
|
| 247 |
</specimenreplicate>
|
|
| 248 |
</specimenreplicate_id>
|
|
| 249 |
</voucher>
|
|
| 250 |
</taxonoccurrence>
|
|
| 251 |
</locationevent>
|
|
| 252 |
</location>
|
|
| 253 |
</path>
|
|
| 254 |
</_simplifyPath>
|
|
| 250 | 255 |
</VegBIEN> |
| 251 | 256 |
Inserted 42 new rows into database |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Added /_simplifyPath:[next=parent_id]/path to root so the returned subplot location will be its parent location if there is no subplot name or ID (indicating that that particular plot did not have subplots). Note that this also causes the parent_id forwarding effect to occur for all other tables containing parent_id, which will help prevent similar issues with subplot events, etc. This will hopefully fix the SALVIAS.plotObservations bug where some organisms did not have a subplot #, causing the subplot location to become NULL and causing the corresponding locationevent rows not to match the locationevent_unique_within_location index filter condition (which requires a parent_id), which caused multiple output table pkeys to be returned for those rows, violating the locationevent_pkeys temp table's primary key.