Revision 4621
Added by Aaron Marcuse-Kubitza almost 12 years ago
| test.xml.ref | ||
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Put template: |
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<VegBIEN> |
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<location id="-1">
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<parent_id><location><authorlocationcode>$1haPlotCode</authorlocationcode></location></parent_id>
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<authorlocationcode>$Subplot</authorlocationcode>
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<locationdetermination>
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<latitude>
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<_nullIf>
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<null>0</null>
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<type>float</type>
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<value>$Latitude</value>
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</_nullIf>
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</latitude>
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<longitude>
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<_nullIf>
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<null>0</null>
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<type>float</type>
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<value>$Longitude</value>
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</_nullIf>
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</longitude>
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</locationdetermination>
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<locationevent>
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<method_id><method><name>$Method</name></method></method_id>
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<project_id><project><projectname>$SiteName</projectname></project></project_id>
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<obsenddate><_date><date><_dateRangeEnd><value>$ObservationDate</value></_dateRangeEnd></date></_date></obsenddate>
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<obsstartdate><_date><date><_dateRangeStart><value>$ObservationDate</value></_dateRangeStart></date></_date></obsstartdate>
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<taxonoccurrence>
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<aggregateoccurrence>
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<plantobservation>
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<specimenreplicate><sourceaccessioncode>$ID</sourceaccessioncode></specimenreplicate>
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<stemobservation>
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<diameterbreastheight>$dbh</diameterbreastheight>
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<stemtag>
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<iscurrent>true</iscurrent>
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<tag>$TreeNumber</tag>
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</stemtag>
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<xposition>$X_1haPlot</xposition>
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<yposition>$Y_1haPlot</yposition>
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</stemobservation>
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</plantobservation>
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</aggregateoccurrence>
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<taxondetermination>
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<plantconcept_id>
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<plantconcept>
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<plantname_id>
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<_simplifyPath>
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<next>parent_id</next>
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<path>
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<plantname>
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<rank>binomial</rank>
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<parent_id>
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<_simplifyPath id="-1">
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<next>parent_id</next>
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<path>
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<location>
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<parent_id><location><authorlocationcode>$1haPlotCode</authorlocationcode></location></parent_id>
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<authorlocationcode>$Subplot</authorlocationcode>
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<locationdetermination>
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<latitude>
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<_nullIf>
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<null>0</null>
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<type>float</type>
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<value>$Latitude</value>
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</_nullIf>
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</latitude>
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<longitude>
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<_nullIf>
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<null>0</null>
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<type>float</type>
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<value>$Longitude</value>
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</_nullIf>
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</longitude>
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</locationdetermination>
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<locationevent>
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<method_id><method><name>$Method</name></method></method_id>
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<project_id><project><projectname>$SiteName</projectname></project></project_id>
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<obsenddate><_date><date><_dateRangeEnd><value>$ObservationDate</value></_dateRangeEnd></date></_date></obsenddate>
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<obsstartdate><_date><date><_dateRangeStart><value>$ObservationDate</value></_dateRangeStart></date></_date></obsstartdate>
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<taxonoccurrence>
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<aggregateoccurrence>
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<plantobservation>
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<specimenreplicate><sourceaccessioncode>$ID</sourceaccessioncode></specimenreplicate>
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<stemobservation>
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<diameterbreastheight>$dbh</diameterbreastheight>
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<stemtag>
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<iscurrent>true</iscurrent>
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<tag>$TreeNumber</tag>
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</stemtag>
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<xposition>$X_1haPlot</xposition>
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<yposition>$Y_1haPlot</yposition>
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</stemobservation>
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</plantobservation>
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</aggregateoccurrence>
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<taxondetermination>
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<plantconcept_id>
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<plantconcept>
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<plantname_id>
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<_simplifyPath>
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<next>parent_id</next>
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<path>
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<plantname> |
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<rank>authority</rank>
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<rank>binomial</rank>
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<parent_id> |
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<plantname> |
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<rank>subspecies</rank>
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<rank>authority</rank>
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| 57 | 57 |
<parent_id> |
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<plantname> |
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<rank>species</rank> |
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<plantname>$SpecificEpithet</plantname> |
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<rank>subspecies</rank> |
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<parent_id> |
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<plantname> |
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<rank>genus</rank>
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<plantname>$Genus</plantname>
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<rank>species</rank>
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<plantname>$SpecificEpithet</plantname>
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<parent_id> |
| 66 | 65 |
<plantname> |
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<rank>family</rank> |
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<plantname>$Family</plantname> |
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<rank>genus</rank> |
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<plantname>$Genus</plantname> |
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<parent_id> |
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<plantname> |
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<rank>family</rank> |
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<plantname>$Family</plantname> |
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</plantname> |
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</parent_id> |
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| 69 | 74 |
</plantname> |
| 70 | 75 |
</parent_id> |
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</plantname> |
| ... | ... | |
| 75 | 80 |
</plantname> |
| 76 | 81 |
</parent_id> |
| 77 | 82 |
</plantname> |
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</parent_id>
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</plantname>
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</path>
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</_simplifyPath>
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</plantname_id>
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</plantconcept>
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</plantconcept_id>
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</taxondetermination>
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<verbatimcollectorname>$Collectors</verbatimcollectorname>
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</taxonoccurrence>
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</locationevent>
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</location>
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</path>
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</_simplifyPath>
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</plantname_id>
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</plantconcept>
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</plantconcept_id>
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</taxondetermination>
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<verbatimcollectorname>$Collectors</verbatimcollectorname>
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</taxonoccurrence>
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</locationevent>
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</location>
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</path>
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</_simplifyPath>
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</VegBIEN> |
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Inserted 23 new rows into database |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Added /_simplifyPath:[next=parent_id]/path to root so the returned subplot location will be its parent location if there is no subplot name or ID (indicating that that particular plot did not have subplots). Note that this also causes the parent_id forwarding effect to occur for all other tables containing parent_id, which will help prevent similar issues with subplot events, etc. This will hopefully fix the SALVIAS.plotObservations bug where some organisms did not have a subplot #, causing the subplot location to become NULL and causing the corresponding locationevent rows not to match the locationevent_unique_within_location index filter condition (which requires a parent_id), which caused multiple output table pkeys to be returned for those rows, violating the locationevent_pkeys temp table's primary key.