Revision 4621
Added by Aaron Marcuse-Kubitza almost 12 years ago
| test.xml.ref | ||
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| 1 | 1 |
Put template: |
| 2 | 2 |
<VegBIEN> |
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<location id="-1">
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<authorlocationcode>
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<_alt>
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<1>$ID</1>
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<2>$Barcode</2>
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</_alt>
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</authorlocationcode>
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<locationdetermination>
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<latitude>
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<_nullIf>
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<null>0</null>
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<type>float</type>
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<value>$Lat</value>
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</_nullIf>
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</latitude>
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<longitude>
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<_nullIf>
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<null>0</null>
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<type>float</type>
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<value>$Long</value>
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</_nullIf>
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</longitude>
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<namedplace_id>
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<_simplifyPath>
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<next>parent_id</next>
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<path>
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<namedplace>
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<rank>county</rank>
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<parent_id>
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<_simplifyPath id="-1">
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<next>parent_id</next>
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<path>
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<location>
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<authorlocationcode>
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<_alt>
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<1>$ID</1>
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<2>$Barcode</2>
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</_alt>
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</authorlocationcode>
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<locationdetermination>
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<latitude>
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<_nullIf>
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<null>0</null>
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<type>float</type>
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<value>$Lat</value>
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</_nullIf>
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</latitude>
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<longitude>
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<_nullIf>
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<null>0</null>
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<type>float</type>
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<value>$Long</value>
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</_nullIf>
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</longitude>
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<namedplace_id>
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<_simplifyPath>
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<next>parent_id</next>
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<path>
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| 32 | 32 |
<namedplace> |
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<rank>stateProvince</rank>
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<rank>county</rank>
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| 34 | 34 |
<parent_id> |
| 35 | 35 |
<namedplace> |
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<rank>country</rank> |
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<placename>$Country</placename> |
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<rank>stateProvince</rank> |
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<parent_id> |
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<namedplace> |
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<rank>country</rank> |
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<placename>$Country</placename> |
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</namedplace> |
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</parent_id> |
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| 38 | 43 |
</namedplace> |
| 39 | 44 |
</parent_id> |
| 40 | 45 |
</namedplace> |
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</parent_id> |
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</namedplace> |
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</path> |
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</_simplifyPath> |
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</namedplace_id> |
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</locationdetermination> |
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<locationevent> |
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<taxonoccurrence> |
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<aggregateoccurrence> |
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<collectiondate> |
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<_date> |
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<day> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$Colldd</value> |
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</_nullIf> |
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</day> |
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<month> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$Collmm</value> |
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</_nullIf> |
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</month> |
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<year> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$Collyy</value> |
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</_nullIf> |
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</year> |
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</_date> |
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</collectiondate> |
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<notes>$Notes</notes> |
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<plantobservation> |
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<collectionnumber>$Number</collectionnumber> |
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<specimenreplicate> |
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<catalognumber_dwc>$Barcode</catalognumber_dwc> |
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<sourceaccessioncode>$ID</sourceaccessioncode> |
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</specimenreplicate> |
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</plantobservation> |
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</aggregateoccurrence> |
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<authortaxoncode>$Number</authortaxoncode> |
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<taxondetermination> |
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<party_id> |
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<party> |
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<givenname><_namePart><first>$Detby</first></_namePart></givenname> |
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<middlename><_namePart><middle>$Detby</middle></_namePart></middlename> |
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<surname><_namePart><last>$Detby</last></_namePart></surname> |
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</party> |
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</party_id> |
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<plantconcept_id> |
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<plantconcept> |
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<plantname_id> |
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<_simplifyPath> |
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<next>parent_id</next> |
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<path> |
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<plantname> |
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<rank>binomial</rank> |
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<parent_id> |
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</path> |
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</_simplifyPath> |
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</namedplace_id> |
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</locationdetermination> |
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<locationevent> |
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<taxonoccurrence> |
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<aggregateoccurrence> |
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<collectiondate> |
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<_date> |
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<day> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$Colldd</value> |
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</_nullIf> |
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</day> |
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<month> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$Collmm</value> |
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</_nullIf> |
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</month> |
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<year> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$Collyy</value> |
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</_nullIf> |
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</year> |
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</_date> |
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</collectiondate> |
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<notes>$Notes</notes> |
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<plantobservation> |
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<collectionnumber>$Number</collectionnumber> |
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<specimenreplicate> |
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<catalognumber_dwc>$Barcode</catalognumber_dwc> |
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<sourceaccessioncode>$ID</sourceaccessioncode> |
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</specimenreplicate> |
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</plantobservation> |
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</aggregateoccurrence> |
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<authortaxoncode>$Number</authortaxoncode> |
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<taxondetermination> |
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<party_id> |
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<party> |
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<givenname><_namePart><first>$Detby</first></_namePart></givenname> |
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<middlename><_namePart><middle>$Detby</middle></_namePart></middlename> |
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<surname><_namePart><last>$Detby</last></_namePart></surname> |
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</party> |
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</party_id> |
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<plantconcept_id> |
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<plantconcept> |
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<plantname_id> |
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<_simplifyPath> |
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<next>parent_id</next> |
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<path> |
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<plantname> |
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<rank>authority</rank>
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<rank>binomial</rank>
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<parent_id> |
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<plantname> |
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<rank>subspecies</rank>
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<rank>authority</rank>
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| 107 | 107 |
<parent_id> |
| 108 | 108 |
<plantname> |
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<rank>species</rank> |
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<rank>subspecies</rank>
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| 110 | 110 |
<parent_id> |
| 111 | 111 |
<plantname> |
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<rank>genus</rank> |
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<plantname>$Genus</plantname> |
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<rank>species</rank> |
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| 114 | 113 |
<parent_id> |
| 115 | 114 |
<plantname> |
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<rank>family</rank> |
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<plantname>$Family</plantname> |
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<rank>genus</rank> |
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<plantname>$Genus</plantname> |
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<parent_id> |
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<plantname> |
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<rank>family</rank> |
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<plantname>$Family</plantname> |
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</plantname> |
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</parent_id> |
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| 118 | 123 |
</plantname> |
| 119 | 124 |
</parent_id> |
| 120 | 125 |
</plantname> |
| ... | ... | |
| 124 | 129 |
</plantname> |
| 125 | 130 |
</parent_id> |
| 126 | 131 |
</plantname> |
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</parent_id> |
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</plantname> |
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</path> |
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</_simplifyPath> |
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</plantname_id> |
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</plantconcept> |
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</plantconcept_id> |
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<determinationdate> |
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<_date> |
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<year> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$Detyy</value> |
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</_nullIf> |
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</year> |
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</_date> |
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</determinationdate> |
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<taxonfit>$cf</taxonfit> |
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</taxondetermination> |
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<verbatimcollectorname> |
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</path> |
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</_simplifyPath> |
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</plantname_id> |
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</plantconcept> |
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</plantconcept_id> |
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<determinationdate> |
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<_date> |
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<year> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$Detyy</value> |
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</_nullIf> |
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</year> |
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</_date> |
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</determinationdate> |
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<taxonfit>$cf</taxonfit> |
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</taxondetermination> |
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<verbatimcollectorname> |
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<_merge> |
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<1>$Collector</1> |
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<2>$Addcoll</2> |
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</_merge> |
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</verbatimcollectorname> |
|
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</taxonoccurrence> |
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</locationevent> |
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<locationnarrative> |
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| 148 | 159 |
<_merge> |
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<1>$Collector</1> |
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<2>$Addcoll</2> |
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</_merge> |
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</verbatimcollectorname> |
|
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</taxonoccurrence> |
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</locationevent> |
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<locationnarrative> |
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<_merge> |
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<2> |
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<_merge> |
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<1> |
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<2> |
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<_merge> |
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<1> |
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<_label> |
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<label>gazetteer</label> |
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<value> |
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<_merge> |
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<1>$Gazetteer</1> |
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<2>$Newgazett</2> |
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</_merge> |
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</value> |
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</_label> |
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</1> |
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<2>$Locnotes</2> |
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</_merge> |
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</2> |
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<3> |
|
| 160 | 177 |
<_label> |
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<label>gazetteer</label> |
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<value> |
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<_merge> |
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<1>$Gazetteer</1> |
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<2>$Newgazett</2> |
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</_merge> |
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</value> |
|
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<label>habitat</label> |
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<value>$Ecology</value> |
|
| 168 | 180 |
</_label> |
| 169 |
</1> |
|
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<2>$Locnotes</2> |
|
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</3> |
|
| 171 | 182 |
</_merge> |
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</2> |
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<3> |
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<_label> |
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<label>habitat</label> |
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<value>$Ecology</value> |
|
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</_label> |
|
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</3> |
|
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</_merge> |
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</locationnarrative> |
|
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</location> |
|
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</locationnarrative> |
|
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</location> |
|
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</path> |
|
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</_simplifyPath> |
|
| 182 | 187 |
</VegBIEN> |
| 183 | 188 |
Inserted 26 new rows into database |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Added /_simplifyPath:[next=parent_id]/path to root so the returned subplot location will be its parent location if there is no subplot name or ID (indicating that that particular plot did not have subplots). Note that this also causes the parent_id forwarding effect to occur for all other tables containing parent_id, which will help prevent similar issues with subplot events, etc. This will hopefully fix the SALVIAS.plotObservations bug where some organisms did not have a subplot #, causing the subplot location to become NULL and causing the corresponding locationevent rows not to match the locationevent_unique_within_location index filter condition (which requires a parent_id), which caused multiple output table pkeys to be returned for those rows, violating the locationevent_pkeys temp table's primary key.