Revision 4621
Added by Aaron Marcuse-Kubitza almost 12 years ago
| test.xml.ref | ||
|---|---|---|
| 1 | 1 |
Put template: |
| 2 | 2 |
<VegBIEN> |
| 3 |
<location id="-1"> |
|
| 4 |
<authorlocationcode> |
|
| 5 |
<_alt> |
|
| 6 |
<1>$accession</1> |
|
| 7 |
<2>$herbarium</2> |
|
| 8 |
</_alt> |
|
| 9 |
</authorlocationcode> |
|
| 10 |
<locationdetermination> |
|
| 11 |
<namedplace_id> |
|
| 12 |
<_simplifyPath> |
|
| 13 |
<next>parent_id</next> |
|
| 14 |
<path> |
|
| 15 |
<namedplace> |
|
| 16 |
<rank>county</rank> |
|
| 17 |
<placename>$county</placename> |
|
| 18 |
<parent_id> |
|
| 3 |
<_simplifyPath id="-1"> |
|
| 4 |
<next>parent_id</next> |
|
| 5 |
<path> |
|
| 6 |
<location> |
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| 7 |
<authorlocationcode> |
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| 8 |
<_alt> |
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| 9 |
<1>$accession</1> |
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| 10 |
<2>$herbarium</2> |
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| 11 |
</_alt> |
|
| 12 |
</authorlocationcode> |
|
| 13 |
<locationdetermination> |
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| 14 |
<namedplace_id> |
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| 15 |
<_simplifyPath> |
|
| 16 |
<next>parent_id</next> |
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| 17 |
<path> |
|
| 19 | 18 |
<namedplace> |
| 20 |
<rank>stateProvince</rank>
|
|
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<placename>$state</placename>
|
|
| 19 |
<rank>county</rank>
|
|
| 20 |
<placename>$county</placename>
|
|
| 22 | 21 |
<parent_id> |
| 23 | 22 |
<namedplace> |
| 24 |
<rank>country</rank> |
|
| 25 |
<placename>$country</placename> |
|
| 23 |
<rank>stateProvince</rank> |
|
| 24 |
<placename>$state</placename> |
|
| 25 |
<parent_id> |
|
| 26 |
<namedplace> |
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| 27 |
<rank>country</rank> |
|
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<placename>$country</placename> |
|
| 29 |
</namedplace> |
|
| 30 |
</parent_id> |
|
| 26 | 31 |
</namedplace> |
| 27 | 32 |
</parent_id> |
| 28 | 33 |
</namedplace> |
| 29 |
</parent_id> |
|
| 30 |
</namedplace> |
|
| 31 |
</path> |
|
| 32 |
</_simplifyPath> |
|
| 33 |
</namedplace_id> |
|
| 34 |
</locationdetermination> |
|
| 35 |
<locationevent> |
|
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<taxonoccurrence> |
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| 37 |
<aggregateoccurrence> |
|
| 38 |
<collectiondate> |
|
| 39 |
<_date> |
|
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<day> |
|
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
|
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<value>$collday</value> |
|
| 45 |
</_nullIf> |
|
| 46 |
</day> |
|
| 47 |
<month> |
|
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<_nullIf> |
|
| 49 |
<null>0</null> |
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| 50 |
<type>float</type> |
|
| 51 |
<value>$collmonth</value> |
|
| 52 |
</_nullIf> |
|
| 53 |
</month> |
|
| 54 |
<year> |
|
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<_nullIf> |
|
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<null>0</null> |
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| 57 |
<type>float</type> |
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<value>$collyear</value> |
|
| 59 |
</_nullIf> |
|
| 60 |
</year> |
|
| 61 |
</_date> |
|
| 62 |
</collectiondate> |
|
| 63 |
<notes> |
|
| 64 |
<_merge> |
|
| 65 |
<1>$comment1</1> |
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<2>$comment2</2> |
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<3>$comment3</3> |
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<4>$comment4</4> |
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<5> |
|
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<_label> |
|
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<label>campus</label> |
|
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<value>$campus</value> |
|
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</_label> |
|
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</5> |
|
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<6> |
|
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<_label> |
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<label>loaned to</label> |
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<value>$loanto</value> |
|
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</_label> |
|
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</6> |
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<7> |
|
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<_label> |
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<label>in or out</label> |
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<value>$inorout</value> |
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</_label> |
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</7> |
|
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</_merge> |
|
| 88 |
</notes> |
|
| 89 |
<plantobservation> |
|
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<collectionnumber>$collectno</collectionnumber> |
|
| 91 |
<specimenreplicate> |
|
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<institution_id><party><organizationname>$herbarium</organizationname></party></institution_id> |
|
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<sourceaccessioncode>$accession</sourceaccessioncode> |
|
| 94 |
</specimenreplicate> |
|
| 95 |
</plantobservation> |
|
| 96 |
</aggregateoccurrence> |
|
| 97 |
<authortaxoncode> |
|
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<_alt> |
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| 99 |
<1>$collectno</1> |
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<2>$SciName</2> |
|
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</_alt> |
|
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</authortaxoncode> |
|
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<iscultivated>$cultivated</iscultivated> |
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<taxondetermination> |
|
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<plantconcept_id> |
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<plantconcept> |
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<plantname_id> |
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<_simplifyPath> |
|
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<next>parent_id</next> |
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<path> |
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<plantname> |
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<rank>binomial</rank> |
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<plantname>$SciName</plantname> |
|
| 114 |
<parent_id> |
|
| 34 |
</path> |
|
| 35 |
</_simplifyPath> |
|
| 36 |
</namedplace_id> |
|
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</locationdetermination> |
|
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<locationevent> |
|
| 39 |
<taxonoccurrence> |
|
| 40 |
<aggregateoccurrence> |
|
| 41 |
<collectiondate> |
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| 42 |
<_date> |
|
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<day> |
|
| 44 |
<_nullIf> |
|
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<null>0</null> |
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| 46 |
<type>float</type> |
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| 47 |
<value>$collday</value> |
|
| 48 |
</_nullIf> |
|
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</day> |
|
| 50 |
<month> |
|
| 51 |
<_nullIf> |
|
| 52 |
<null>0</null> |
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| 53 |
<type>float</type> |
|
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<value>$collmonth</value> |
|
| 55 |
</_nullIf> |
|
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</month> |
|
| 57 |
<year> |
|
| 58 |
<_nullIf> |
|
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<null>0</null> |
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<type>float</type> |
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<value>$collyear</value> |
|
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</_nullIf> |
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</year> |
|
| 64 |
</_date> |
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</collectiondate> |
|
| 66 |
<notes> |
|
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<_merge> |
|
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<1>$comment1</1> |
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<2>$comment2</2> |
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<3>$comment3</3> |
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<4>$comment4</4> |
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<5> |
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<_label> |
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<label>campus</label> |
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<value>$campus</value> |
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</_label> |
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</5> |
|
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<6> |
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<_label> |
|
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<label>loaned to</label> |
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<value>$loanto</value> |
|
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</_label> |
|
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</6> |
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<7> |
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<_label> |
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<label>in or out</label> |
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<value>$inorout</value> |
|
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</_label> |
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</7> |
|
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</_merge> |
|
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</notes> |
|
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<plantobservation> |
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<collectionnumber>$collectno</collectionnumber> |
|
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<specimenreplicate> |
|
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<institution_id><party><organizationname>$herbarium</organizationname></party></institution_id> |
|
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<sourceaccessioncode>$accession</sourceaccessioncode> |
|
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</specimenreplicate> |
|
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</plantobservation> |
|
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</aggregateoccurrence> |
|
| 100 |
<authortaxoncode> |
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<_alt> |
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<1>$collectno</1> |
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<2>$SciName</2> |
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</_alt> |
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</authortaxoncode> |
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<iscultivated>$cultivated</iscultivated> |
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<taxondetermination> |
|
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<plantconcept_id> |
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<plantconcept> |
|
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<plantname_id> |
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| 111 |
<_simplifyPath> |
|
| 112 |
<next>parent_id</next> |
|
| 113 |
<path> |
|
| 115 | 114 |
<plantname> |
| 116 |
<rank>authority</rank>
|
|
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<plantname>$authors</plantname>
|
|
| 115 |
<rank>binomial</rank>
|
|
| 116 |
<plantname>$SciName</plantname>
|
|
| 118 | 117 |
<parent_id> |
| 119 | 118 |
<plantname> |
| 120 |
<rank>subspecies</rank> |
|
| 121 |
<plantname> |
|
| 122 |
<_name> |
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<first> |
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<_alt> |
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<1>$usdaRank</1> |
|
| 126 |
<2>$infrarank</2> |
|
| 127 |
</_alt> |
|
| 128 |
</first> |
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<last>$infraname</last> |
|
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</_name> |
|
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</plantname> |
|
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<rank>authority</rank> |
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<plantname>$authors</plantname> |
|
| 132 | 121 |
<parent_id> |
| 133 | 122 |
<plantname> |
| 134 |
<rank>species</rank> |
|
| 135 |
<plantname>$species</plantname> |
|
| 123 |
<rank>subspecies</rank> |
|
| 124 |
<plantname> |
|
| 125 |
<_name> |
|
| 126 |
<first> |
|
| 127 |
<_alt> |
|
| 128 |
<1>$usdaRank</1> |
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| 129 |
<2>$infrarank</2> |
|
| 130 |
</_alt> |
|
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</first> |
|
| 132 |
<last>$infraname</last> |
|
| 133 |
</_name> |
|
| 134 |
</plantname> |
|
| 136 | 135 |
<parent_id> |
| 137 | 136 |
<plantname> |
| 138 |
<rank>genus</rank>
|
|
| 139 |
<plantname>$genus</plantname>
|
|
| 137 |
<rank>species</rank>
|
|
| 138 |
<plantname>$species</plantname>
|
|
| 140 | 139 |
<parent_id> |
| 141 | 140 |
<plantname> |
| 142 |
<rank>family</rank> |
|
| 143 |
<plantname>$family</plantname> |
|
| 141 |
<rank>genus</rank> |
|
| 142 |
<plantname>$genus</plantname> |
|
| 143 |
<parent_id> |
|
| 144 |
<plantname> |
|
| 145 |
<rank>family</rank> |
|
| 146 |
<plantname>$family</plantname> |
|
| 147 |
</plantname> |
|
| 148 |
</parent_id> |
|
| 144 | 149 |
</plantname> |
| 145 | 150 |
</parent_id> |
| 146 | 151 |
</plantname> |
| ... | ... | |
| 150 | 155 |
</plantname> |
| 151 | 156 |
</parent_id> |
| 152 | 157 |
</plantname> |
| 153 |
</parent_id> |
|
| 154 |
</plantname> |
|
| 155 |
</path> |
|
| 156 |
</_simplifyPath> |
|
| 157 |
</plantname_id> |
|
| 158 |
</plantconcept> |
|
| 159 |
</plantconcept_id> |
|
| 160 |
</taxondetermination> |
|
| 161 |
<verbatimcollectorname> |
|
| 158 |
</path> |
|
| 159 |
</_simplifyPath> |
|
| 160 |
</plantname_id> |
|
| 161 |
</plantconcept> |
|
| 162 |
</plantconcept_id> |
|
| 163 |
</taxondetermination> |
|
| 164 |
<verbatimcollectorname> |
|
| 165 |
<_merge> |
|
| 166 |
<1>$collector</1> |
|
| 167 |
<2>$collector1</2> |
|
| 168 |
<3>$collector2</3> |
|
| 169 |
<4>$collector3</4> |
|
| 170 |
</_merge> |
|
| 171 |
</verbatimcollectorname> |
|
| 172 |
</taxonoccurrence> |
|
| 173 |
</locationevent> |
|
| 174 |
<locationnarrative> |
|
| 162 | 175 |
<_merge> |
| 163 |
<1>$collector</1> |
|
| 164 |
<2>$collector1</2> |
|
| 165 |
<3>$collector2</3> |
|
| 166 |
<4>$collector3</4> |
|
| 176 |
<1>$locality</1> |
|
| 177 |
<3> |
|
| 178 |
<_label> |
|
| 179 |
<label>habitat</label> |
|
| 180 |
<value>$habitat</value> |
|
| 181 |
</_label> |
|
| 182 |
</3> |
|
| 167 | 183 |
</_merge> |
| 168 |
</verbatimcollectorname> |
|
| 169 |
</taxonoccurrence> |
|
| 170 |
</locationevent> |
|
| 171 |
<locationnarrative> |
|
| 172 |
<_merge> |
|
| 173 |
<1>$locality</1> |
|
| 174 |
<3> |
|
| 175 |
<_label> |
|
| 176 |
<label>habitat</label> |
|
| 177 |
<value>$habitat</value> |
|
| 178 |
</_label> |
|
| 179 |
</3> |
|
| 180 |
</_merge> |
|
| 181 |
</locationnarrative> |
|
| 182 |
</location> |
|
| 184 |
</locationnarrative> |
|
| 185 |
</location> |
|
| 186 |
</path> |
|
| 187 |
</_simplifyPath> |
|
| 183 | 188 |
</VegBIEN> |
| 184 | 189 |
Inserted 22 new rows into database |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Added /_simplifyPath:[next=parent_id]/path to root so the returned subplot location will be its parent location if there is no subplot name or ID (indicating that that particular plot did not have subplots). Note that this also causes the parent_id forwarding effect to occur for all other tables containing parent_id, which will help prevent similar issues with subplot events, etc. This will hopefully fix the SALVIAS.plotObservations bug where some organisms did not have a subplot #, causing the subplot location to become NULL and causing the corresponding locationevent rows not to match the locationevent_unique_within_location index filter condition (which requires a parent_id), which caused multiple output table pkeys to be returned for those rows, violating the locationevent_pkeys temp table's primary key.