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1
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VegCore[Veg+],VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
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2
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subplotID,"/location/_if[@name=""if subplot""]/cond/1",
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3
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subplot,"/location/_if[@name=""if subplot""]/cond/2",
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4
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plotName,"/location/_if[@name=""if subplot""]/else/authorlocationcode",
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5
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locationID,"/location/authorlocationcode/_if[@name=""if locationID""]/cond/_exists",
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6
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fieldNumber,"/location/authorlocationcode/_if[@name=""if locationID""]/else",
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7
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occurrenceID,"/location/_if[@name=""if subplot""]/else/authorlocationcode",
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8
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institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode",
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9
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collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode",
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10
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collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode",
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11
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voucherType,"/location/authorlocationcode/_if[@name=""if indirect voucher""]/cond",
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12
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catalogNumber,"/location/authorlocationcode/_if[@name=""if indirect voucher""]/else",
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13
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locationID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode",
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14
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plotName,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode",
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15
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locationID,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode",
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16
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plotArea,//location/area,
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17
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subplot,//location/authorlocationcode,
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18
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verbatimElevation,//location/elevation,
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19
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maximumElevationInMeters,//location/elevation,
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20
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minimumElevationInMeters,//location/elevation,
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21
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minimumElevationInMeters,//location/elevationrange,
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22
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maximumElevationInMeters,//location/elevationrange,
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23
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minimumElevationInMeters,//location/elevationrange,
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24
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landform,//location/landform,
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25
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coordinateUncertaintyInMeters,//locationdetermination/coordsaccuracy,
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26
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coordinatePrecision,//locationdetermination/coordsaccuracy,
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27
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footprintWKT,//locationdetermination/footprintgeometry_dwc,
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28
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decimalLatitude,//locationdetermination/latitude,
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29
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verbatimLatitude,//locationdetermination/latitude,
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30
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decimalLongitude,//locationdetermination/longitude,
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31
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verbatimLongitude,//locationdetermination/longitude,
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32
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county,//locationdetermination/namedplace_id[rank=county]/placename,
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33
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stateProvince,//locationdetermination/namedplace_id[rank=stateProvince]/placename,
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34
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country,//locationdetermination/namedplace_id[rank=country]/placename,
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35
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continent,//locationdetermination/namedplace_id[rank=continent]/placename,
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36
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samplingProtocol,//method/name,
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37
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projectName,//project/projectname,
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38
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projectID,//project/sourceaccessioncode,
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39
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subplotID,"//location/locationevent/_if[@name=""if subplot""]/cond/1",
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40
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subplot,"//location/locationevent/_if[@name=""if subplot""]/cond/2",
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41
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fieldNumber,"//location/locationevent/_if[@name=""if subplot""]/else/authoreventcode",
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42
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eventID,"//location/locationevent/_if[@name=""if subplot""]/else/sourceaccessioncode",
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43
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eventID,"//location/locationevent/_if[@name=""if event""]/cond/1",
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44
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fieldNumber,"//location/locationevent/_if[@name=""if event""]/cond/2",
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45
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plotName,"//location/locationevent/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/authorlocationcode",
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46
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locationID,"//location/locationevent/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode",
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47
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fieldNumber,"//location/locationevent/_if[@name=""if event""]/then/parent_id/locationevent/authorlocationcode",
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48
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eventID,"//location/locationevent/_if[@name=""if event""]/then/parent_id/locationevent/sourceaccessioncode",
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49
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communityID,//*/commname,
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50
|
communityName,//commconcept/commdescription,
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51
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endDate,//locationevent/obsenddate/_*/date,
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52
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eventDate,//locationevent/obsenddate/_*/date,
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53
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startDate,//locationevent/obsstartdate/_*/date,
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54
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eventDate,//locationevent/obsstartdate/_*/date,
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55
|
precipitation,//locationevent/precipitation,
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56
|
acidity,//soilobs/acidity,
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57
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baseSaturation,//soilobs/basesaturation,
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58
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calcium,//soilobs/calcium,
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59
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carbon,//soilobs/carbon,
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60
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cationExchangeCapacity,//soilobs/cationexchangecapacity,
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61
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clay,//soilobs/clay,
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62
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conductivity,//soilobs/conductivity,
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63
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magnesium,//soilobs/magnesium,
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64
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nitrogen,//soilobs/nitrogen,
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65
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organic,//soilobs/organic,
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66
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ph,//soilobs/ph,
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67
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phosphorus,//soilobs/phosphorus,
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68
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potassium,//soilobs/potassium,
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69
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sand,//soilobs/sand,
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70
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silt,//soilobs/silt,
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71
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sodium,//soilobs/sodium,
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72
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texture,//soilobs/texture,
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73
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dateCollected,//aggregateoccurrence/collectiondate/_*/date,
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74
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dayCollected,//aggregateoccurrence/collectiondate,
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75
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monthCollected,//aggregateoccurrence/collectiondate,
|
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76
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yearCollected,//aggregateoccurrence/collectiondate,
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77
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individualCount,//aggregateoccurrence/count,
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78
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coverPercent,//aggregateoccurrence/cover,
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79
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censusNumber,"//aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]/definedvalue",
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80
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volumeCanopy,//aggregateoccurrence/linecover,
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81
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fieldNotes,//aggregateoccurrence/notes,
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82
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recordNumber,//plantobservation/collectionnumber,
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83
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sex,"//plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections"
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84
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individualID,//plantobservation/sourceaccessioncode,
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85
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voucherType,"//specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond",
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86
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catalogNumber,"//specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
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87
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collectionCode,//specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
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88
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collectionID,//specimenreplicate/collectioncode_dwc,
|
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89
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institutionCode,//party/organizationname,
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90
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occurrenceID,//specimenreplicate/sourceaccessioncode,
|
|
91
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stemCount,//plantobservation/stemcount,
|
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92
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authorStemCode,//stemobservation/authorstemcode,
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93
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basalDiameter,//stemobservation/basaldiameter,
|
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94
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canopyForm,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]/definedvalue",
|
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95
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canopyPosition,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]/definedvalue",
|
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96
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diameterBreastHeightGentry,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]/definedvalue",
|
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97
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lianaInfestation,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]/definedvalue",
|
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98
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stemNotes,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]/definedvalue",
|
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99
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diameterBreastHeight,//stemobservation/diameterbreastheight,
|
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100
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height,//stemobservation/height,
|
|
101
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heightFirstBranch,//stemobservation/heightfirstbranch,
|
|
102
|
stemID,//stemobservation/sourceaccessioncode,
|
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103
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tag,"//stemobservation/stemtag[""""/iscurrent=true]/tag",Quotes sort it before tag2
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104
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previousTag,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag:[../stemtag?[iscurrent=true]/iscurrent=false]/tag,
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105
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organismX,//stemobservation/xposition,
|
|
106
|
organismY,//stemobservation/yposition,
|
|
107
|
recordNumber,//taxonoccurrence/authortaxoncode,
|
|
108
|
verbatimScientificName,//taxonoccurrence/authortaxoncode,
|
|
109
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scientificName,//taxonoccurrence/authortaxoncode,
|
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110
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growthForm,//taxonoccurrence/growthform,
|
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111
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verbatimGrowthForm,//taxonoccurrence/growthform,"According to <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.habit>, <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/SALVIAS#Habit>"
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112
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cultivated,//taxonoccurrence/iscultivated,
|
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113
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establishmentMeans,//taxonoccurrence/iscultivated,
|
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114
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establishmentMeans,//taxonoccurrence/isnative,
|
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115
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taxonOccurrenceID,//taxonoccurrence/sourceaccessioncode,
|
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116
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individualID,//taxonoccurrence/sourceaccessioncode,
|
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117
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identifiedBy,//taxonoccurrence/taxondetermination[]/*_id/party/givenname,
|
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118
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identifiedBy,//taxonoccurrence/taxondetermination[]/*_id/party/middlename,
|
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119
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identifiedBy,//taxonoccurrence/taxondetermination[]/*_id/party/surname,
|
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120
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scientificName,//plantconcept/plantname_id[rank=binomial]/plantname,
|
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121
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scientificNameAuthorship,//plantconcept/plantname_id[rank=authority]/plantname,
|
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122
|
taxonRank,//plantconcept/plantname_id[rank=subspecies]/plantname,
|
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123
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infraspecificEpithet,//plantconcept/plantname_id[rank=subspecies]/plantname,
|
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124
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specificEpithet,//plantconcept/plantname_id[rank=species]/plantname,
|
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125
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genus,//plantconcept/plantname_id[rank=genus]/plantname,
|
|
126
|
family,//plantconcept/plantname_id[rank=family]/plantname,
|
|
127
|
order,//plantconcept/plantname_id[rank=order]/plantname,
|
|
128
|
class,//plantconcept/plantname_id[rank=class]/plantname,
|
|
129
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phylum,//plantconcept/plantname_id[rank=subkingdom]/plantname,
|
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130
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kingdom,//plantconcept/plantname_id[rank=kingdom]/plantname,
|
|
131
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dateIdentified,//taxonoccurrence/taxondetermination[]/determinationdate/_*/date,
|
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132
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dayIdentified,//taxonoccurrence/taxondetermination[]/determinationdate,
|
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133
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monthIdentified,//taxonoccurrence/taxondetermination[]/determinationdate,
|
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134
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yearIdentified,//taxonoccurrence/taxondetermination[]/determinationdate,
|
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135
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taxonRemarks,//taxonoccurrence/taxondetermination[]/notes,
|
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136
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identificationQualifier,//taxonoccurrence/taxondetermination[]/taxonfit,
|
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137
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verbatimScientificName,//plantconcept/plantname_id[rank=binomial]/plantname,
|
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138
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verbatimScientificNameAuthorship,//plantconcept/plantname_id[rank=authority]/plantname,
|
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139
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verbatimInfraspecificEpithet,//plantconcept/plantname_id[rank=subspecies]/plantname,
|
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140
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verbatimSpecificEpithet,//plantconcept/plantname_id[rank=species]/plantname,
|
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141
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verbatimGenus,//plantconcept/plantname_id[rank=genus]/plantname,
|
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142
|
verbatimFamily,//plantconcept/plantname_id[rank=family]/plantname,
|
|
143
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verbatimOrder,//plantconcept/plantname_id[rank=order]/plantname,
|
|
144
|
verbatimClass,//plantconcept/plantname_id[rank=class]/plantname,
|
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145
|
verbatimPhylum,//plantconcept/plantname_id[rank=subkingdom]/plantname,
|
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146
|
verbatimKingdom,//plantconcept/plantname_id[rank=kingdom]/plantname,
|
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147
|
verbatimIdentificationQualifier,//taxonoccurrence/taxondetermination[isoriginal=true]/taxonfit,
|
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148
|
recordedBy,//taxonoccurrence/verbatimcollectorname,
|
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149
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recordedBy.givenName,//taxonoccurrence/verbatimcollectorname,
|
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150
|
recordedBy.surName,//taxonoccurrence/verbatimcollectorname,
|
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151
|
voucherType,"//specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond",
|
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152
|
catalogNumber,"//specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
|
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153
|
temperature,//locationevent/temperature,
|
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154
|
maximumDepthInMeters,//locationevent/waterdepth,
|
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155
|
minimumDepthInMeters,//locationevent/waterdepth,
|
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156
|
locality,//location/locationnarrative,
|
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157
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verbatimLocality,//location/locationnarrative,
|
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158
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habitat,"//location/locationnarrative/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
|
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159
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plotNotes,//location/notespublic,
|
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160
|
slopeAspect,//location/slopeaspect,
|
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161
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maxSlopeAspect,//location/slopeaspect,
|
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162
|
minSlopeAspect,//location/slopeaspect,
|
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163
|
slopeGradient,//location/slopegradient,
|
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164
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maxSlopeGradient,//location/slopegradient,
|
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165
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minSlopeGradient,//location/slopegradient,
|
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166
|
subplotID,//location/sourceaccessioncode,
|
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167
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subplotX,//location/sublocationxposition,
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168
|
subplotY,//location/sublocationyposition,
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