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Revision 4631

inputs/SpeciesLink/Specimen/src.csv, map.csv: Switched from using root prefixes to full column names, because the namespace mapping functionality can be handled much better by treating each namespace-qualified term as its own term rather than as a term and a prefix

View differences:

inputs/SpeciesLink/Specimen/src.csv
1
"SpeciesLink[Veg+,dwc_dwcore_,dwc_curatorial_,dwc_geospatial_,http__purl_org_,dwc_terms_,conceptual_darwin_2003_1_0_]",Veg+,Comments,Original name
2
GlobalUniqueIdentifier,GlobalUniqueIdentifier,,dwc_dwcore_GlobalUniqueIdentifier
3
DateLastModified,DateLastModified,,dwc_dwcore_DateLastModified
4
BasisOfRecord,BasisOfRecord,,dwc_dwcore_BasisOfRecord
5
InstitutionCode,InstitutionCode,,dwc_dwcore_InstitutionCode
6
CollectionCode,CollectionCode,,dwc_dwcore_CollectionCode
7
CatalogNumber,CatalogNumber,,dwc_dwcore_CatalogNumber
8
Remarks,Remarks,,dwc_dwcore_Remarks
9
ScientificName,ScientificName,,dwc_dwcore_ScientificName
10
Kingdom,Kingdom,,dwc_dwcore_Kingdom
11
Phylum,Phylum,,dwc_dwcore_Phylum
12
Class,Class,,dwc_dwcore_Class
13
Order,Order,,dwc_dwcore_Order
14
Family,Family,,dwc_dwcore_Family
15
Genus,Genus,,dwc_dwcore_Genus
16
SpecificEpithet,SpecificEpithet,,dwc_dwcore_SpecificEpithet
17
InfraspecificEpithet,InfraspecificEpithet,,dwc_dwcore_InfraspecificEpithet
18
AuthorYearOfScientificName,AuthorYearOfScientificName,,dwc_dwcore_AuthorYearOfScientificName
19
Continent,Continent,,dwc_dwcore_Continent
20
Country,Country,,dwc_dwcore_Country
21
StateProvince,StateProvince,,dwc_dwcore_StateProvince
22
County,County,,dwc_dwcore_County
23
Locality,Locality,,dwc_dwcore_Locality
24
MinimumElevationInMeters,MinimumElevationInMeters,,dwc_dwcore_MinimumElevationInMeters
25
MaximumElevationInMeters,MaximumElevationInMeters,,dwc_dwcore_MaximumElevationInMeters
26
MinimumDepthInMeters,MinimumDepthInMeters,,dwc_dwcore_MinimumDepthInMeters
27
MaximumDepthInMeters,MaximumDepthInMeters,,dwc_dwcore_MaximumDepthInMeters
28
DayOfYear,DayOfYear,,dwc_dwcore_DayOfYear
29
Collector,Collector,,dwc_dwcore_Collector
30
Sex,Sex,,dwc_dwcore_Sex
31
IdentifiedBy,IdentifiedBy,,dwc_curatorial_IdentifiedBy
32
CollectorNumber,CollectorNumber,,dwc_curatorial_CollectorNumber
33
FieldNumber,FieldNumber,,dwc_curatorial_FieldNumber
34
TypeStatus,TypeStatus,,dwc_curatorial_TypeStatus
35
IndividualCount,IndividualCount,,dwc_curatorial_IndividualCount
36
DecimalLatitude,DecimalLatitude,,dwc_geospatial_DecimalLatitude
37
DecimalLongitude,DecimalLongitude,,dwc_geospatial_DecimalLongitude
38
VerbatimLatitude,VerbatimLatitude,,dwc_geospatial_VerbatimLatitude
39
VerbatimLongitude,VerbatimLongitude,,dwc_geospatial_VerbatimLongitude
40
dc_terms_modified,dc_terms_modified,,http__purl_org_dc_terms_modified
41
collectionID,collectionID,,dwc_terms_collectionID
42
institutionCode,institutionCode,,dwc_terms_institutionCode
43
collectionCode,collectionCode,,dwc_terms_collectionCode
44
basisOfRecord,basisOfRecord,,dwc_terms_basisOfRecord
45
identifiedBy,identifiedBy,,dwc_terms_identifiedBy
46
dateIdentified,dateIdentified,,dwc_terms_dateIdentified
47
typeStatus,typeStatus,,dwc_terms_typeStatus
48
catalogNumber,catalogNumber,,dwc_terms_catalogNumber
49
occurrenceRemarks,occurrenceRemarks,,dwc_terms_occurrenceRemarks
50
recordNumber,recordNumber,,dwc_terms_recordNumber
51
recordedBy,recordedBy,,dwc_terms_recordedBy
52
individualCount,individualCount,,dwc_terms_individualCount
53
sex,sex,,dwc_terms_sex
54
preparations,preparations,,dwc_terms_preparations
55
otherCatalogNumbers,otherCatalogNumbers,,dwc_terms_otherCatalogNumbers
56
eventTime,eventTime,,dwc_terms_eventTime
57
startDayOfYear,startDayOfYear,,dwc_terms_startDayOfYear
58
endDayOfYear,endDayOfYear,,dwc_terms_endDayOfYear
59
year,year,,dwc_terms_year
60
month,month,,dwc_terms_month
61
day,day,,dwc_terms_day
62
fieldNumber,fieldNumber,,dwc_terms_fieldNumber
63
continent,continent,,dwc_terms_continent
64
country,country,,dwc_terms_country
65
stateProvince,stateProvince,,dwc_terms_stateProvince
66
county,county,,dwc_terms_county
67
locality,locality,,dwc_terms_locality
68
minimumElevationInMeters,minimumElevationInMeters,,dwc_terms_minimumElevationInMeters
69
maximumElevationInMeters,maximumElevationInMeters,,dwc_terms_maximumElevationInMeters
70
minimumDepthInMeters,minimumDepthInMeters,,dwc_terms_minimumDepthInMeters
71
maximumDepthInMeters,maximumDepthInMeters,,dwc_terms_maximumDepthInMeters
72
verbatimLatitude,verbatimLatitude,,dwc_terms_verbatimLatitude
73
verbatimLongitude,verbatimLongitude,,dwc_terms_verbatimLongitude
74
decimalLatitude,decimalLatitude,,dwc_terms_decimalLatitude
75
decimalLongitude,decimalLongitude,,dwc_terms_decimalLongitude
76
coordinateUncertaintyInMeters,coordinateUncertaintyInMeters,,dwc_terms_coordinateUncertaintyInMeters
77
scientificName,scientificName,,dwc_terms_scientificName
78
kingdom,kingdom,,dwc_terms_kingdom
79
phylum,phylum,,dwc_terms_phylum
80
class,class,,dwc_terms_class
81
order,order,,dwc_terms_order
82
family,family,,dwc_terms_family
83
genus,genus,,dwc_terms_genus
84
specificEpithet,specificEpithet,,dwc_terms_specificEpithet
85
infraspecificEpithet,infraspecificEpithet,,dwc_terms_infraspecificEpithet
86
scientificNameAuthorship,scientificNameAuthorship,,dwc_terms_scientificNameAuthorship
87
DateLastModified,DateLastModified,,conceptual_darwin_2003_1_0_DateLastModified
88
InstitutionCode,InstitutionCode,,conceptual_darwin_2003_1_0_InstitutionCode
89
CollectionCode,CollectionCode,,conceptual_darwin_2003_1_0_CollectionCode
90
CatalogNumber,CatalogNumber,,conceptual_darwin_2003_1_0_CatalogNumber
91
ScientificName,ScientificName,,conceptual_darwin_2003_1_0_ScientificName
92
BasisOfRecord,BasisOfRecord,,conceptual_darwin_2003_1_0_BasisOfRecord
93
Kingdom,Kingdom,,conceptual_darwin_2003_1_0_Kingdom
94
Phylum,Phylum,,conceptual_darwin_2003_1_0_Phylum
95
Class,Class,,conceptual_darwin_2003_1_0_Class
96
Order,Order,,conceptual_darwin_2003_1_0_Order
97
Family,Family,,conceptual_darwin_2003_1_0_Family
98
Genus,Genus,,conceptual_darwin_2003_1_0_Genus
99
Species,Species,,conceptual_darwin_2003_1_0_Species
100
Subspecies,Subspecies,,conceptual_darwin_2003_1_0_Subspecies
101
ScientificNameAuthor,ScientificNameAuthor,,conceptual_darwin_2003_1_0_ScientificNameAuthor
102
IdentifiedBy,IdentifiedBy,,conceptual_darwin_2003_1_0_IdentifiedBy
103
YearIdentified,YearIdentified,,conceptual_darwin_2003_1_0_YearIdentified
104
MonthIdentified,MonthIdentified,,conceptual_darwin_2003_1_0_MonthIdentified
105
DayIdentified,DayIdentified,,conceptual_darwin_2003_1_0_DayIdentified
106
TypeStatus,TypeStatus,,conceptual_darwin_2003_1_0_TypeStatus
107
CollectorNumber,CollectorNumber,,conceptual_darwin_2003_1_0_CollectorNumber
108
FieldNumber,FieldNumber,,conceptual_darwin_2003_1_0_FieldNumber
109
Collector,Collector,,conceptual_darwin_2003_1_0_Collector
110
YearCollected,YearCollected,,conceptual_darwin_2003_1_0_YearCollected
111
MonthCollected,MonthCollected,,conceptual_darwin_2003_1_0_MonthCollected
112
DayCollected,DayCollected,,conceptual_darwin_2003_1_0_DayCollected
113
JulianDay,JulianDay,,conceptual_darwin_2003_1_0_JulianDay
114
TimeOfDay,TimeOfDay,,conceptual_darwin_2003_1_0_TimeOfDay
115
ContinentOcean,ContinentOcean,,conceptual_darwin_2003_1_0_ContinentOcean
116
Country,Country,,conceptual_darwin_2003_1_0_Country
117
StateProvince,StateProvince,,conceptual_darwin_2003_1_0_StateProvince
118
County,County,,conceptual_darwin_2003_1_0_County
119
Locality,Locality,,conceptual_darwin_2003_1_0_Locality
120
Longitude,Longitude,,conceptual_darwin_2003_1_0_Longitude
121
Latitude,Latitude,,conceptual_darwin_2003_1_0_Latitude
122
CoordinatePrecision,CoordinatePrecision,,conceptual_darwin_2003_1_0_CoordinatePrecision
123
BoundingBox,BoundingBox,,conceptual_darwin_2003_1_0_BoundingBox
124
MinimumElevation,MinimumElevation,,conceptual_darwin_2003_1_0_MinimumElevation
125
MaximumElevation,MaximumElevation,,conceptual_darwin_2003_1_0_MaximumElevation
126
MinimumDepth,MinimumDepth,,conceptual_darwin_2003_1_0_MinimumDepth
127
MaximumDepth,MaximumDepth,,conceptual_darwin_2003_1_0_MaximumDepth
128
Sex,Sex,,conceptual_darwin_2003_1_0_Sex
129
PreparationType,PreparationType,,conceptual_darwin_2003_1_0_PreparationType
130
IndividualCount,IndividualCount,,conceptual_darwin_2003_1_0_IndividualCount
131
PreviousCatalogNumber,PreviousCatalogNumber,,conceptual_darwin_2003_1_0_PreviousCatalogNumber
132
RelationshipType,RelationshipType,,conceptual_darwin_2003_1_0_RelationshipType
133
RelatedCatalogItem,RelatedCatalogItem,,conceptual_darwin_2003_1_0_RelatedCatalogItem
134
Notes,Notes,,conceptual_darwin_2003_1_0_Notes
1
SpeciesLink[Veg+],Veg+,Comments
2
dwc_dwcore_GlobalUniqueIdentifier,GlobalUniqueIdentifier,
3
dwc_dwcore_DateLastModified,DateLastModified,
4
dwc_dwcore_BasisOfRecord,BasisOfRecord,
5
dwc_dwcore_InstitutionCode,InstitutionCode,
6
dwc_dwcore_CollectionCode,CollectionCode,
7
dwc_dwcore_CatalogNumber,CatalogNumber,
8
dwc_dwcore_Remarks,Remarks,
9
dwc_dwcore_ScientificName,ScientificName,
10
dwc_dwcore_Kingdom,Kingdom,
11
dwc_dwcore_Phylum,Phylum,
12
dwc_dwcore_Class,Class,
13
dwc_dwcore_Order,Order,
14
dwc_dwcore_Family,Family,
15
dwc_dwcore_Genus,Genus,
16
dwc_dwcore_SpecificEpithet,SpecificEpithet,
17
dwc_dwcore_InfraspecificEpithet,InfraspecificEpithet,
18
dwc_dwcore_AuthorYearOfScientificName,AuthorYearOfScientificName,
19
dwc_dwcore_Continent,Continent,
20
dwc_dwcore_Country,Country,
21
dwc_dwcore_StateProvince,StateProvince,
22
dwc_dwcore_County,County,
23
dwc_dwcore_Locality,Locality,
24
dwc_dwcore_MinimumElevationInMeters,MinimumElevationInMeters,
25
dwc_dwcore_MaximumElevationInMeters,MaximumElevationInMeters,
26
dwc_dwcore_MinimumDepthInMeters,MinimumDepthInMeters,
27
dwc_dwcore_MaximumDepthInMeters,MaximumDepthInMeters,
28
dwc_dwcore_DayOfYear,DayOfYear,
29
dwc_dwcore_Collector,Collector,
30
dwc_dwcore_Sex,Sex,
31
dwc_curatorial_IdentifiedBy,IdentifiedBy,
32
dwc_curatorial_CollectorNumber,CollectorNumber,
33
dwc_curatorial_FieldNumber,FieldNumber,
34
dwc_curatorial_TypeStatus,TypeStatus,
35
dwc_curatorial_IndividualCount,IndividualCount,
36
dwc_geospatial_DecimalLatitude,DecimalLatitude,
37
dwc_geospatial_DecimalLongitude,DecimalLongitude,
38
dwc_geospatial_VerbatimLatitude,VerbatimLatitude,
39
dwc_geospatial_VerbatimLongitude,VerbatimLongitude,
40
http__purl_org_dc_terms_modified,dc_terms_modified,
41
dwc_terms_collectionID,collectionID,
42
dwc_terms_institutionCode,institutionCode,
43
dwc_terms_collectionCode,collectionCode,
44
dwc_terms_basisOfRecord,basisOfRecord,
45
dwc_terms_identifiedBy,identifiedBy,
46
dwc_terms_dateIdentified,dateIdentified,
47
dwc_terms_typeStatus,typeStatus,
48
dwc_terms_catalogNumber,catalogNumber,
49
dwc_terms_occurrenceRemarks,occurrenceRemarks,
50
dwc_terms_recordNumber,recordNumber,
51
dwc_terms_recordedBy,recordedBy,
52
dwc_terms_individualCount,individualCount,
53
dwc_terms_sex,sex,
54
dwc_terms_preparations,preparations,
55
dwc_terms_otherCatalogNumbers,otherCatalogNumbers,
56
dwc_terms_eventTime,eventTime,
57
dwc_terms_startDayOfYear,startDayOfYear,
58
dwc_terms_endDayOfYear,endDayOfYear,
59
dwc_terms_year,year,
60
dwc_terms_month,month,
61
dwc_terms_day,day,
62
dwc_terms_fieldNumber,fieldNumber,
63
dwc_terms_continent,continent,
64
dwc_terms_country,country,
65
dwc_terms_stateProvince,stateProvince,
66
dwc_terms_county,county,
67
dwc_terms_locality,locality,
68
dwc_terms_minimumElevationInMeters,minimumElevationInMeters,
69
dwc_terms_maximumElevationInMeters,maximumElevationInMeters,
70
dwc_terms_minimumDepthInMeters,minimumDepthInMeters,
71
dwc_terms_maximumDepthInMeters,maximumDepthInMeters,
72
dwc_terms_verbatimLatitude,verbatimLatitude,
73
dwc_terms_verbatimLongitude,verbatimLongitude,
74
dwc_terms_decimalLatitude,decimalLatitude,
75
dwc_terms_decimalLongitude,decimalLongitude,
76
dwc_terms_coordinateUncertaintyInMeters,coordinateUncertaintyInMeters,
77
dwc_terms_scientificName,scientificName,
78
dwc_terms_kingdom,kingdom,
79
dwc_terms_phylum,phylum,
80
dwc_terms_class,class,
81
dwc_terms_order,order,
82
dwc_terms_family,family,
83
dwc_terms_genus,genus,
84
dwc_terms_specificEpithet,specificEpithet,
85
dwc_terms_infraspecificEpithet,infraspecificEpithet,
86
dwc_terms_scientificNameAuthorship,scientificNameAuthorship,
87
conceptual_darwin_2003_1_0_DateLastModified,DateLastModified,
88
conceptual_darwin_2003_1_0_InstitutionCode,InstitutionCode,
89
conceptual_darwin_2003_1_0_CollectionCode,CollectionCode,
90
conceptual_darwin_2003_1_0_CatalogNumber,CatalogNumber,
91
conceptual_darwin_2003_1_0_ScientificName,ScientificName,
92
conceptual_darwin_2003_1_0_BasisOfRecord,BasisOfRecord,
93
conceptual_darwin_2003_1_0_Kingdom,Kingdom,
94
conceptual_darwin_2003_1_0_Phylum,Phylum,
95
conceptual_darwin_2003_1_0_Class,Class,
96
conceptual_darwin_2003_1_0_Order,Order,
97
conceptual_darwin_2003_1_0_Family,Family,
98
conceptual_darwin_2003_1_0_Genus,Genus,
99
conceptual_darwin_2003_1_0_Species,Species,
100
conceptual_darwin_2003_1_0_Subspecies,Subspecies,
101
conceptual_darwin_2003_1_0_ScientificNameAuthor,ScientificNameAuthor,
102
conceptual_darwin_2003_1_0_IdentifiedBy,IdentifiedBy,
103
conceptual_darwin_2003_1_0_YearIdentified,YearIdentified,
104
conceptual_darwin_2003_1_0_MonthIdentified,MonthIdentified,
105
conceptual_darwin_2003_1_0_DayIdentified,DayIdentified,
106
conceptual_darwin_2003_1_0_TypeStatus,TypeStatus,
107
conceptual_darwin_2003_1_0_CollectorNumber,CollectorNumber,
108
conceptual_darwin_2003_1_0_FieldNumber,FieldNumber,
109
conceptual_darwin_2003_1_0_Collector,Collector,
110
conceptual_darwin_2003_1_0_YearCollected,YearCollected,
111
conceptual_darwin_2003_1_0_MonthCollected,MonthCollected,
112
conceptual_darwin_2003_1_0_DayCollected,DayCollected,
113
conceptual_darwin_2003_1_0_JulianDay,JulianDay,
114
conceptual_darwin_2003_1_0_TimeOfDay,TimeOfDay,
115
conceptual_darwin_2003_1_0_ContinentOcean,ContinentOcean,
116
conceptual_darwin_2003_1_0_Country,Country,
117
conceptual_darwin_2003_1_0_StateProvince,StateProvince,
118
conceptual_darwin_2003_1_0_County,County,
119
conceptual_darwin_2003_1_0_Locality,Locality,
120
conceptual_darwin_2003_1_0_Longitude,Longitude,
121
conceptual_darwin_2003_1_0_Latitude,Latitude,
122
conceptual_darwin_2003_1_0_CoordinatePrecision,CoordinatePrecision,
123
conceptual_darwin_2003_1_0_BoundingBox,BoundingBox,
124
conceptual_darwin_2003_1_0_MinimumElevation,MinimumElevation,
125
conceptual_darwin_2003_1_0_MaximumElevation,MaximumElevation,
126
conceptual_darwin_2003_1_0_MinimumDepth,MinimumDepth,
127
conceptual_darwin_2003_1_0_MaximumDepth,MaximumDepth,
128
conceptual_darwin_2003_1_0_Sex,Sex,
129
conceptual_darwin_2003_1_0_PreparationType,PreparationType,
130
conceptual_darwin_2003_1_0_IndividualCount,IndividualCount,
131
conceptual_darwin_2003_1_0_PreviousCatalogNumber,PreviousCatalogNumber,
132
conceptual_darwin_2003_1_0_RelationshipType,RelationshipType,
133
conceptual_darwin_2003_1_0_RelatedCatalogItem,RelatedCatalogItem,
134
conceptual_darwin_2003_1_0_Notes,Notes,
inputs/SpeciesLink/Specimen/map.csv
1
"SpeciesLink[Veg+,dwc_dwcore_,dwc_curatorial_,dwc_geospatial_,http__purl_org_,dwc_terms_,conceptual_darwin_2003_1_0_]",Veg+,Comments
2
AuthorYearOfScientificName,ScientificNameAuthor/_alt/3,
3
ScientificNameAuthor,ScientificNameAuthor/_alt/2,
4
scientificNameAuthorship,ScientificNameAuthor/_alt/1,
5
DayOfYear,JulianDay/_alt/2,
6
JulianDay,JulianDay/_alt/1,
7
CollectorNumber,recordNumber/_alt/3,
8
FieldNumber,recordNumber/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)
1
SpeciesLink[Veg+],Veg+,Comments
2
dwc_dwcore_GlobalUniqueIdentifier,occurrenceID,
3
dwc_dwcore_DateLastModified,dcterms:modified,
4
dwc_dwcore_BasisOfRecord,BasisOfRecord,
5
dwc_dwcore_InstitutionCode,institutionCode,
6
dwc_dwcore_CollectionCode,collectionCode,
7
dwc_dwcore_CatalogNumber,catalogNumber,
8
dwc_dwcore_Remarks,taxonRemarks,
9
dwc_dwcore_ScientificName,scientificName,
10
dwc_dwcore_Kingdom,kingdom,
11
dwc_dwcore_Phylum,phylum,
12
dwc_dwcore_Class,class,
13
dwc_dwcore_Order,order,
14
dwc_dwcore_Family,family,
15
dwc_dwcore_Genus,genus,
16
dwc_dwcore_SpecificEpithet,specificEpithet,
17
dwc_dwcore_InfraspecificEpithet,infraspecificEpithet,
18
dwc_dwcore_AuthorYearOfScientificName,ScientificNameAuthor/_alt/3,
19
dwc_dwcore_Continent,continent,
20
dwc_dwcore_Country,country,
21
dwc_dwcore_StateProvince,stateProvince,
22
dwc_dwcore_County,county,
23
dwc_dwcore_Locality,locality,
24
dwc_dwcore_MinimumElevationInMeters,minimumElevationInMeters,
25
dwc_dwcore_MaximumElevationInMeters,maximumElevationInMeters,
26
dwc_dwcore_MinimumDepthInMeters,minimumDepthInMeters,
27
dwc_dwcore_MaximumDepthInMeters,maximumDepthInMeters,
28
dwc_dwcore_DayOfYear,JulianDay/_alt/2,
29
dwc_dwcore_Collector,recordedBy,
30
dwc_dwcore_Sex,sex,
31
dwc_curatorial_IdentifiedBy,identifiedBy,
32
dwc_curatorial_CollectorNumber,recordNumber/_alt/3,
33
dwc_curatorial_FieldNumber,recordNumber/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)
9 34
-----
10 35
SELECT count(*) FROM ""SpeciesLink"".specimens
11 36
WHERE COALESCE(""dwc_curatorial_FieldNumber"", ""dwc_terms_fieldNumber"", ""conceptual_darwin_2003_1_0_FieldNumber"") != ""dwc_terms_recordNumber""
12 37
-----"
13
recordNumber,recordNumber/_alt/1,
14
dc_terms_modified,dcterms:modified,
38
dwc_curatorial_TypeStatus,TypeStatus,
39
dwc_curatorial_IndividualCount,individualCount,
40
dwc_geospatial_DecimalLatitude,decimalLatitude,
41
dwc_geospatial_DecimalLongitude,decimalLongitude,
42
dwc_geospatial_VerbatimLatitude,verbatimLatitude,
43
dwc_geospatial_VerbatimLongitude,verbatimLongitude,
44
http__purl_org_dc_terms_modified,dcterms:modified,
45
dwc_terms_collectionID,collectionID,
46
dwc_terms_institutionCode,institutionCode,
47
dwc_terms_collectionCode,collectionCode,
48
dwc_terms_basisOfRecord,basisOfRecord,
49
dwc_terms_identifiedBy,identifiedBy,
50
dwc_terms_dateIdentified,dateIdentified,
51
dwc_terms_typeStatus,typeStatus,
52
dwc_terms_catalogNumber,catalogNumber,
53
dwc_terms_occurrenceRemarks,occurrenceRemarks,
54
dwc_terms_recordNumber,recordNumber/_alt/1,
55
dwc_terms_recordedBy,recordedBy,
56
dwc_terms_individualCount,individualCount,
57
dwc_terms_sex,sex,
58
dwc_terms_preparations,preparations,
59
dwc_terms_otherCatalogNumbers,otherCatalogNumbers,
60
dwc_terms_eventTime,eventTime,
61
dwc_terms_startDayOfYear,startDayOfYear,
62
dwc_terms_endDayOfYear,endDayOfYear,
63
dwc_terms_year,year,
64
dwc_terms_month,month,
65
dwc_terms_day,day,
66
dwc_terms_fieldNumber,recordNumber/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)
67
-----
68
SELECT count(*) FROM ""SpeciesLink"".specimens
69
WHERE COALESCE(""dwc_curatorial_FieldNumber"", ""dwc_terms_fieldNumber"", ""conceptual_darwin_2003_1_0_FieldNumber"") != ""dwc_terms_recordNumber""
70
-----"
71
dwc_terms_continent,continent,
72
dwc_terms_country,country,
73
dwc_terms_stateProvince,stateProvince,
74
dwc_terms_county,county,
75
dwc_terms_locality,locality,
76
dwc_terms_minimumElevationInMeters,minimumElevationInMeters,
77
dwc_terms_maximumElevationInMeters,maximumElevationInMeters,
78
dwc_terms_minimumDepthInMeters,minimumDepthInMeters,
79
dwc_terms_maximumDepthInMeters,maximumDepthInMeters,
80
dwc_terms_verbatimLatitude,verbatimLatitude,
81
dwc_terms_verbatimLongitude,verbatimLongitude,
82
dwc_terms_decimalLatitude,decimalLatitude,
83
dwc_terms_decimalLongitude,decimalLongitude,
84
dwc_terms_coordinateUncertaintyInMeters,coordinateUncertaintyInMeters,
85
dwc_terms_scientificName,scientificName,
86
dwc_terms_kingdom,kingdom,
87
dwc_terms_phylum,phylum,
88
dwc_terms_class,class,
89
dwc_terms_order,order,
90
dwc_terms_family,family,
91
dwc_terms_genus,genus,
92
dwc_terms_specificEpithet,specificEpithet,
93
dwc_terms_infraspecificEpithet,infraspecificEpithet,
94
dwc_terms_scientificNameAuthorship,ScientificNameAuthor/_alt/1,
95
conceptual_darwin_2003_1_0_DateLastModified,dcterms:modified,
96
conceptual_darwin_2003_1_0_InstitutionCode,institutionCode,
97
conceptual_darwin_2003_1_0_CollectionCode,collectionCode,
98
conceptual_darwin_2003_1_0_CatalogNumber,catalogNumber,
99
conceptual_darwin_2003_1_0_ScientificName,scientificName,
100
conceptual_darwin_2003_1_0_BasisOfRecord,BasisOfRecord,
101
conceptual_darwin_2003_1_0_Kingdom,kingdom,
102
conceptual_darwin_2003_1_0_Phylum,phylum,
103
conceptual_darwin_2003_1_0_Class,class,
104
conceptual_darwin_2003_1_0_Order,order,
105
conceptual_darwin_2003_1_0_Family,family,
106
conceptual_darwin_2003_1_0_Genus,genus,
107
conceptual_darwin_2003_1_0_Species,specificEpithet,
108
conceptual_darwin_2003_1_0_Subspecies,infraspecificEpithet,
109
conceptual_darwin_2003_1_0_ScientificNameAuthor,ScientificNameAuthor/_alt/2,
110
conceptual_darwin_2003_1_0_IdentifiedBy,identifiedBy,
111
conceptual_darwin_2003_1_0_YearIdentified,yearIdentified,
112
conceptual_darwin_2003_1_0_MonthIdentified,monthIdentified,
113
conceptual_darwin_2003_1_0_DayIdentified,dayIdentified,
114
conceptual_darwin_2003_1_0_TypeStatus,TypeStatus,
115
conceptual_darwin_2003_1_0_CollectorNumber,recordNumber/_alt/3,
116
conceptual_darwin_2003_1_0_FieldNumber,recordNumber/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)
117
-----
118
SELECT count(*) FROM ""SpeciesLink"".specimens
119
WHERE COALESCE(""dwc_curatorial_FieldNumber"", ""dwc_terms_fieldNumber"", ""conceptual_darwin_2003_1_0_FieldNumber"") != ""dwc_terms_recordNumber""
120
-----"
121
conceptual_darwin_2003_1_0_Collector,recordedBy,
122
conceptual_darwin_2003_1_0_YearCollected,yearCollected,
123
conceptual_darwin_2003_1_0_MonthCollected,monthCollected,
124
conceptual_darwin_2003_1_0_DayCollected,dayCollected,
125
conceptual_darwin_2003_1_0_JulianDay,JulianDay/_alt/1,
126
conceptual_darwin_2003_1_0_TimeOfDay,eventTime,
127
conceptual_darwin_2003_1_0_ContinentOcean,continent,
128
conceptual_darwin_2003_1_0_Country,country,
129
conceptual_darwin_2003_1_0_StateProvince,stateProvince,
130
conceptual_darwin_2003_1_0_County,county,
131
conceptual_darwin_2003_1_0_Locality,locality,
132
conceptual_darwin_2003_1_0_Longitude,verbatimLongitude,
133
conceptual_darwin_2003_1_0_Latitude,verbatimLatitude,
134
conceptual_darwin_2003_1_0_CoordinatePrecision,coordinatePrecision,
135
conceptual_darwin_2003_1_0_BoundingBox,footprintWKT,
136
conceptual_darwin_2003_1_0_MinimumElevation,minimumElevationInMeters,
137
conceptual_darwin_2003_1_0_MaximumElevation,maximumElevationInMeters,
138
conceptual_darwin_2003_1_0_MinimumDepth,minimumDepthInMeters,
139
conceptual_darwin_2003_1_0_MaximumDepth,maximumDepthInMeters,
140
conceptual_darwin_2003_1_0_Sex,sex,
141
conceptual_darwin_2003_1_0_PreparationType,preparations,
142
conceptual_darwin_2003_1_0_IndividualCount,individualCount,
143
conceptual_darwin_2003_1_0_PreviousCatalogNumber,otherCatalogNumbers,
144
conceptual_darwin_2003_1_0_RelationshipType,relationshipOfResource,
145
conceptual_darwin_2003_1_0_RelatedCatalogItem,relatedResourceID,
146
conceptual_darwin_2003_1_0_Notes,fieldNotes,
inputs/SpeciesLink/Specimen/map.full.csv
1
"SpeciesLink[Veg+,dwc_dwcore_,dwc_curatorial_,dwc_geospatial_,http__purl_org_,dwc_terms_,conceptual_darwin_2003_1_0_]",Veg+,Comments
2
JulianDay,JulianDay/_alt/1,
3
DayOfYear,JulianDay/_alt/2,
4
scientificNameAuthorship,ScientificNameAuthor/_alt/1,
5
ScientificNameAuthor,ScientificNameAuthor/_alt/2,
6
AuthorYearOfScientificName,ScientificNameAuthor/_alt/3,
7
boundingBox,boundingBox
8
catalogNumber,catalogNumber
9
class,class
10
collectionCode,collectionCode
11
collectionID,collectionID
12
collector,collector
13
continent,continent
14
continentOcean,continentOcean
15
coordinatePrecision,coordinatePrecision
16
coordinateUncertaintyInMeters,coordinateUncertaintyInMeters
17
country,country
18
county,county
19
dateIdentified,dateIdentified
20
dayCollected,dayCollected
21
dayIdentified,dayIdentified
22
dc_terms_modified,dcterms:modified,
23
decimalLatitude,decimalLatitude
24
decimalLongitude,decimalLongitude
25
family,family
26
genus,genus
27
globalUniqueIdentifier,globalUniqueIdentifier
28
identifiedBy,identifiedBy
29
individualCount,individualCount
30
infraspecificEpithet,infraspecificEpithet
31
institutionCode,institutionCode
32
kingdom,kingdom
33
latitude,latitude
34
locality,locality
35
longitude,longitude
36
maximumDepth,maximumDepth
37
maximumDepthInMeters,maximumDepthInMeters
38
maximumElevation,maximumElevation
39
maximumElevationInMeters,maximumElevationInMeters
40
minimumDepth,minimumDepth
41
minimumDepthInMeters,minimumDepthInMeters
42
minimumElevation,minimumElevation
43
minimumElevationInMeters,minimumElevationInMeters
44
monthCollected,monthCollected
45
monthIdentified,monthIdentified
46
notes,notes
47
order,order
48
phylum,phylum
49
recordNumber,recordNumber/_alt/1,
50
FieldNumber,recordNumber/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)
1
SpeciesLink[Veg+],Veg+,Comments
2
conceptual_darwin_2003_1_0_BasisOfRecord,BasisOfRecord,
3
dwc_dwcore_BasisOfRecord,BasisOfRecord,
4
conceptual_darwin_2003_1_0_JulianDay,JulianDay/_alt/1,
5
dwc_dwcore_DayOfYear,JulianDay/_alt/2,
6
dwc_terms_scientificNameAuthorship,ScientificNameAuthor/_alt/1,
7
conceptual_darwin_2003_1_0_ScientificNameAuthor,ScientificNameAuthor/_alt/2,
8
dwc_dwcore_AuthorYearOfScientificName,ScientificNameAuthor/_alt/3,
9
conceptual_darwin_2003_1_0_TypeStatus,TypeStatus,
10
dwc_curatorial_TypeStatus,TypeStatus,
11
dwc_terms_basisOfRecord,basisOfRecord,
12
conceptual_darwin_2003_1_0_CatalogNumber,catalogNumber,
13
dwc_dwcore_CatalogNumber,catalogNumber,
14
dwc_terms_catalogNumber,catalogNumber,
15
conceptual_darwin_2003_1_0_Class,class,
16
dwc_dwcore_Class,class,
17
dwc_terms_class,class,
18
conceptual_darwin_2003_1_0_CollectionCode,collectionCode,
19
dwc_dwcore_CollectionCode,collectionCode,
20
dwc_terms_collectionCode,collectionCode,
21
dwc_terms_collectionID,collectionID,
22
conceptual_darwin_2003_1_0_ContinentOcean,continent,
23
dwc_dwcore_Continent,continent,
24
dwc_terms_continent,continent,
25
conceptual_darwin_2003_1_0_CoordinatePrecision,coordinatePrecision,
26
dwc_terms_coordinateUncertaintyInMeters,coordinateUncertaintyInMeters,
27
conceptual_darwin_2003_1_0_Country,country,
28
dwc_dwcore_Country,country,
29
dwc_terms_country,country,
30
conceptual_darwin_2003_1_0_County,county,
31
dwc_dwcore_County,county,
32
dwc_terms_county,county,
33
dwc_terms_dateIdentified,dateIdentified,
34
dwc_terms_day,day,
35
conceptual_darwin_2003_1_0_DayCollected,dayCollected,
36
conceptual_darwin_2003_1_0_DayIdentified,dayIdentified,
37
conceptual_darwin_2003_1_0_DateLastModified,dcterms:modified,
38
dwc_dwcore_DateLastModified,dcterms:modified,
39
http__purl_org_dc_terms_modified,dcterms:modified,
40
dwc_geospatial_DecimalLatitude,decimalLatitude,
41
dwc_terms_decimalLatitude,decimalLatitude,
42
dwc_geospatial_DecimalLongitude,decimalLongitude,
43
dwc_terms_decimalLongitude,decimalLongitude,
44
dwc_terms_endDayOfYear,endDayOfYear,
45
conceptual_darwin_2003_1_0_TimeOfDay,eventTime,
46
dwc_terms_eventTime,eventTime,
47
conceptual_darwin_2003_1_0_Family,family,
48
dwc_dwcore_Family,family,
49
dwc_terms_family,family,
50
conceptual_darwin_2003_1_0_Notes,fieldNotes,
51
conceptual_darwin_2003_1_0_BoundingBox,footprintWKT,
52
conceptual_darwin_2003_1_0_Genus,genus,
53
dwc_dwcore_Genus,genus,
54
dwc_terms_genus,genus,
55
conceptual_darwin_2003_1_0_IdentifiedBy,identifiedBy,
56
dwc_curatorial_IdentifiedBy,identifiedBy,
57
dwc_terms_identifiedBy,identifiedBy,
58
conceptual_darwin_2003_1_0_IndividualCount,individualCount,
59
dwc_curatorial_IndividualCount,individualCount,
60
dwc_terms_individualCount,individualCount,
61
conceptual_darwin_2003_1_0_Subspecies,infraspecificEpithet,
62
dwc_dwcore_InfraspecificEpithet,infraspecificEpithet,
63
dwc_terms_infraspecificEpithet,infraspecificEpithet,
64
conceptual_darwin_2003_1_0_InstitutionCode,institutionCode,
65
dwc_dwcore_InstitutionCode,institutionCode,
66
dwc_terms_institutionCode,institutionCode,
67
conceptual_darwin_2003_1_0_Kingdom,kingdom,
68
dwc_dwcore_Kingdom,kingdom,
69
dwc_terms_kingdom,kingdom,
70
conceptual_darwin_2003_1_0_Locality,locality,
71
dwc_dwcore_Locality,locality,
72
dwc_terms_locality,locality,
73
conceptual_darwin_2003_1_0_MaximumDepth,maximumDepthInMeters,
74
dwc_dwcore_MaximumDepthInMeters,maximumDepthInMeters,
75
dwc_terms_maximumDepthInMeters,maximumDepthInMeters,
76
conceptual_darwin_2003_1_0_MaximumElevation,maximumElevationInMeters,
77
dwc_dwcore_MaximumElevationInMeters,maximumElevationInMeters,
78
dwc_terms_maximumElevationInMeters,maximumElevationInMeters,
79
conceptual_darwin_2003_1_0_MinimumDepth,minimumDepthInMeters,
80
dwc_dwcore_MinimumDepthInMeters,minimumDepthInMeters,
81
dwc_terms_minimumDepthInMeters,minimumDepthInMeters,
82
conceptual_darwin_2003_1_0_MinimumElevation,minimumElevationInMeters,
83
dwc_dwcore_MinimumElevationInMeters,minimumElevationInMeters,
84
dwc_terms_minimumElevationInMeters,minimumElevationInMeters,
85
dwc_terms_month,month,
86
conceptual_darwin_2003_1_0_MonthCollected,monthCollected,
87
conceptual_darwin_2003_1_0_MonthIdentified,monthIdentified,
88
dwc_dwcore_GlobalUniqueIdentifier,occurrenceID,
89
dwc_terms_occurrenceRemarks,occurrenceRemarks,
90
conceptual_darwin_2003_1_0_Order,order,
91
dwc_dwcore_Order,order,
92
dwc_terms_order,order,
93
conceptual_darwin_2003_1_0_PreviousCatalogNumber,otherCatalogNumbers,
94
dwc_terms_otherCatalogNumbers,otherCatalogNumbers,
95
conceptual_darwin_2003_1_0_Phylum,phylum,
96
dwc_dwcore_Phylum,phylum,
97
dwc_terms_phylum,phylum,
98
conceptual_darwin_2003_1_0_PreparationType,preparations,
99
dwc_terms_preparations,preparations,
100
dwc_terms_recordNumber,recordNumber/_alt/1,
101
conceptual_darwin_2003_1_0_FieldNumber,recordNumber/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)
51 102
-----
52 103
SELECT count(*) FROM ""SpeciesLink"".specimens
53 104
WHERE COALESCE(""dwc_curatorial_FieldNumber"", ""dwc_terms_fieldNumber"", ""conceptual_darwin_2003_1_0_FieldNumber"") != ""dwc_terms_recordNumber""
54 105
-----"
55
CollectorNumber,recordNumber/_alt/3,
56
recordedBy,recordedBy
57
remarks,remarks
58
scientificName,scientificName
59
sex,sex
60
species,species
61
specificEpithet,specificEpithet
62
stateProvince,stateProvince
63
subspecies,subspecies
64
verbatimLatitude,verbatimLatitude
65
verbatimLongitude,verbatimLongitude
66
yearCollected,yearCollected
67
yearIdentified,yearIdentified
106
dwc_curatorial_FieldNumber,recordNumber/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)
107
-----
108
SELECT count(*) FROM ""SpeciesLink"".specimens
109
WHERE COALESCE(""dwc_curatorial_FieldNumber"", ""dwc_terms_fieldNumber"", ""conceptual_darwin_2003_1_0_FieldNumber"") != ""dwc_terms_recordNumber""
110
-----"
111
dwc_terms_fieldNumber,recordNumber/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)
112
-----
113
SELECT count(*) FROM ""SpeciesLink"".specimens
114
WHERE COALESCE(""dwc_curatorial_FieldNumber"", ""dwc_terms_fieldNumber"", ""conceptual_darwin_2003_1_0_FieldNumber"") != ""dwc_terms_recordNumber""
115
-----"
116
conceptual_darwin_2003_1_0_CollectorNumber,recordNumber/_alt/3,
117
dwc_curatorial_CollectorNumber,recordNumber/_alt/3,
118
conceptual_darwin_2003_1_0_Collector,recordedBy,
119
dwc_dwcore_Collector,recordedBy,
120
dwc_terms_recordedBy,recordedBy,
121
conceptual_darwin_2003_1_0_RelatedCatalogItem,relatedResourceID,
122
conceptual_darwin_2003_1_0_RelationshipType,relationshipOfResource,
123
conceptual_darwin_2003_1_0_ScientificName,scientificName,
124
dwc_dwcore_ScientificName,scientificName,
125
dwc_terms_scientificName,scientificName,
126
conceptual_darwin_2003_1_0_Sex,sex,
127
dwc_dwcore_Sex,sex,
128
dwc_terms_sex,sex,
129
conceptual_darwin_2003_1_0_Species,specificEpithet,
130
dwc_dwcore_SpecificEpithet,specificEpithet,
131
dwc_terms_specificEpithet,specificEpithet,
132
dwc_terms_startDayOfYear,startDayOfYear,
133
conceptual_darwin_2003_1_0_StateProvince,stateProvince,
134
dwc_dwcore_StateProvince,stateProvince,
135
dwc_terms_stateProvince,stateProvince,
136
dwc_dwcore_Remarks,taxonRemarks,
137
dwc_terms_typeStatus,typeStatus,
138
conceptual_darwin_2003_1_0_Latitude,verbatimLatitude,
139
dwc_geospatial_VerbatimLatitude,verbatimLatitude,
140
dwc_terms_verbatimLatitude,verbatimLatitude,
141
conceptual_darwin_2003_1_0_Longitude,verbatimLongitude,
142
dwc_geospatial_VerbatimLongitude,verbatimLongitude,
143
dwc_terms_verbatimLongitude,verbatimLongitude,
144
dwc_terms_year,year,
145
conceptual_darwin_2003_1_0_YearCollected,yearCollected,
146
conceptual_darwin_2003_1_0_YearIdentified,yearIdentified,
inputs/SpeciesLink/Specimen/VegBIEN.csv
1
"SpeciesLink[Veg+,dwc_dwcore_,dwc_curatorial_,dwc_geospatial_,http__purl_org_,dwc_terms_,conceptual_darwin_2003_1_0_]",VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
2
globalUniqueIdentifier,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
3
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
4
collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
5
collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/2",
6
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
7
maximumElevation,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
8
maximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
9
minimumElevation,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",
10
minimumElevationInMeters,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",
11
minimumElevation,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",
12
minimumElevationInMeters,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",
13
maximumElevation,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1/_replace:[""\bca\.?""=]/value",
14
maximumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1/_replace:[""\bca\.?""=]/value",
15
minimumElevation,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value",
16
minimumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value",
17
coordinateUncertaintyInMeters,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1,
18
coordinatePrecision,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2,
19
boundingBox,/location/locationdetermination/footprintgeometry_dwc,
20
decimalLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",
21
latitude,"/location/locationdetermination/latitude/_alt/2/_nullIf:[null=0,type=float]/value",
22
verbatimLatitude,"/location/locationdetermination/latitude/_alt/2/_nullIf:[null=0,type=float]/value",
23
decimalLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",
24
longitude,"/location/locationdetermination/longitude/_alt/2/_nullIf:[null=0,type=float]/value",
25
verbatimLongitude,"/location/locationdetermination/longitude/_alt/2/_nullIf:[null=0,type=float]/value",
26
county,"/location/locationdetermination/namedplace_id/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",
27
stateProvince,"/location/locationdetermination/namedplace_id/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",
28
country,"/location/locationdetermination/namedplace_id/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",
29
continent,"/location/locationdetermination/namedplace_id/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",
30
continentOcean,"/location/locationdetermination/namedplace_id/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",
31
dayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
32
monthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
33
yearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
34
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,
35
notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes,
36
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/1,
37
FieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)
1
SpeciesLink[Veg+],VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
2
dwc_dwcore_GlobalUniqueIdentifier,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
3
conceptual_darwin_2003_1_0_InstitutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
4
dwc_dwcore_InstitutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
5
dwc_terms_institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
6
conceptual_darwin_2003_1_0_CollectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
7
dwc_dwcore_CollectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
8
dwc_terms_collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
9
dwc_terms_collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/2",
10
conceptual_darwin_2003_1_0_CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
11
dwc_dwcore_CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
12
dwc_terms_catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
13
conceptual_darwin_2003_1_0_MaximumElevation,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
14
dwc_dwcore_MaximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
15
dwc_terms_maximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
16
conceptual_darwin_2003_1_0_MinimumElevation,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",
17
dwc_dwcore_MinimumElevationInMeters,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",
18
dwc_terms_minimumElevationInMeters,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",
19
conceptual_darwin_2003_1_0_MinimumElevation,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",
20
dwc_dwcore_MinimumElevationInMeters,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",
21
dwc_terms_minimumElevationInMeters,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",
22
conceptual_darwin_2003_1_0_MaximumElevation,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1/_replace:[""\bca\.?""=]/value",
23
dwc_dwcore_MaximumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1/_replace:[""\bca\.?""=]/value",
24
dwc_terms_maximumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1/_replace:[""\bca\.?""=]/value",
25
conceptual_darwin_2003_1_0_MinimumElevation,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value",
26
dwc_dwcore_MinimumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value",
27
dwc_terms_minimumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value",
28
dwc_terms_coordinateUncertaintyInMeters,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1,
29
conceptual_darwin_2003_1_0_CoordinatePrecision,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2,
30
conceptual_darwin_2003_1_0_BoundingBox,/location/locationdetermination/footprintgeometry_dwc,
31
dwc_geospatial_DecimalLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",
32
dwc_terms_decimalLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",
33
conceptual_darwin_2003_1_0_Latitude,"/location/locationdetermination/latitude/_alt/2/_nullIf:[null=0,type=float]/value",
34
dwc_geospatial_VerbatimLatitude,"/location/locationdetermination/latitude/_alt/2/_nullIf:[null=0,type=float]/value",
35
dwc_terms_verbatimLatitude,"/location/locationdetermination/latitude/_alt/2/_nullIf:[null=0,type=float]/value",
36
dwc_geospatial_DecimalLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",
37
dwc_terms_decimalLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",
38
conceptual_darwin_2003_1_0_Longitude,"/location/locationdetermination/longitude/_alt/2/_nullIf:[null=0,type=float]/value",
39
dwc_geospatial_VerbatimLongitude,"/location/locationdetermination/longitude/_alt/2/_nullIf:[null=0,type=float]/value",
40
dwc_terms_verbatimLongitude,"/location/locationdetermination/longitude/_alt/2/_nullIf:[null=0,type=float]/value",
41
conceptual_darwin_2003_1_0_County,"/location/locationdetermination/namedplace_id/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",
42
dwc_dwcore_County,"/location/locationdetermination/namedplace_id/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",
43
dwc_terms_county,"/location/locationdetermination/namedplace_id/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",
44
conceptual_darwin_2003_1_0_StateProvince,"/location/locationdetermination/namedplace_id/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",
45
dwc_dwcore_StateProvince,"/location/locationdetermination/namedplace_id/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",
46
dwc_terms_stateProvince,"/location/locationdetermination/namedplace_id/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",
47
conceptual_darwin_2003_1_0_Country,"/location/locationdetermination/namedplace_id/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",
48
dwc_dwcore_Country,"/location/locationdetermination/namedplace_id/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",
49
dwc_terms_country,"/location/locationdetermination/namedplace_id/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",
50
conceptual_darwin_2003_1_0_ContinentOcean,"/location/locationdetermination/namedplace_id/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",
51
dwc_dwcore_Continent,"/location/locationdetermination/namedplace_id/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",
52
dwc_terms_continent,"/location/locationdetermination/namedplace_id/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",
53
conceptual_darwin_2003_1_0_DayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
54
conceptual_darwin_2003_1_0_MonthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
55
conceptual_darwin_2003_1_0_YearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
56
conceptual_darwin_2003_1_0_IndividualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,
57
dwc_curatorial_IndividualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,
58
dwc_terms_individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,
59
conceptual_darwin_2003_1_0_Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes,
60
dwc_terms_recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/1,
61
conceptual_darwin_2003_1_0_FieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)
38 62
-----
39 63
SELECT count(*) FROM ""SpeciesLink"".specimens
40 64
WHERE COALESCE(""dwc_curatorial_FieldNumber"", ""dwc_terms_fieldNumber"", ""conceptual_darwin_2003_1_0_FieldNumber"") != ""dwc_terms_recordNumber""
41 65
-----"
42
CollectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/3,
43
sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections"
44
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
45
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
46
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/2,
47
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname,
48
globalUniqueIdentifier,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,
49
recordNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/1,
50
FieldNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)
66
dwc_curatorial_FieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)
51 67
-----
52 68
SELECT count(*) FROM ""SpeciesLink"".specimens
53 69
WHERE COALESCE(""dwc_curatorial_FieldNumber"", ""dwc_terms_fieldNumber"", ""conceptual_darwin_2003_1_0_FieldNumber"") != ""dwc_terms_recordNumber""
54 70
-----"
55
CollectorNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/3,
56
scientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2,
57
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first,
58
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/middlename/_namePart/middle,
59
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/surname/_namePart/last,
60
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
61
scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname/_alt/1",
62
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname/_alt/2",
63
AuthorYearOfScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname/_alt/3",
64
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last",
65
subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last",
66
species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
67
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
68
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
69
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
70
order,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",
71
class,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",
72
phylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",
73
kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
74
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_*/date/_dateRangeStart/value,
75
dayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
76
monthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
77
yearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
78
remarks,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/notes,
79
collector,/location/locationevent/taxonoccurrence/verbatimcollectorname,
80
recordedBy,/location/locationevent/taxonoccurrence/verbatimcollectorname,
81
catalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
82
maximumDepth,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
83
maximumDepthInMeters,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
84
minimumDepth,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
85
minimumDepthInMeters,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
86
locality,/location/locationnarrative/_merge/1,
87
DayOfYear,,** No join mapping for JulianDay/_alt/2 ** 
88
JulianDay,,** No join mapping for JulianDay/_alt/1 ** 
89
dc_terms_modified,,** No join mapping for dcterms:modified ** 
71
dwc_terms_fieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)
72
-----
73
SELECT count(*) FROM ""SpeciesLink"".specimens
74
WHERE COALESCE(""dwc_curatorial_FieldNumber"", ""dwc_terms_fieldNumber"", ""conceptual_darwin_2003_1_0_FieldNumber"") != ""dwc_terms_recordNumber""
75
-----"
76
conceptual_darwin_2003_1_0_CollectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/3,
77
dwc_curatorial_CollectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/3,
78
conceptual_darwin_2003_1_0_Sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections"
79
dwc_dwcore_Sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections"
80
dwc_terms_sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections"
81
conceptual_darwin_2003_1_0_CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
82
dwc_dwcore_CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
83
dwc_terms_catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
84
conceptual_darwin_2003_1_0_CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
85
dwc_dwcore_CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
86
dwc_terms_collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
87
dwc_terms_collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/2,
88
conceptual_darwin_2003_1_0_InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname,
89
dwc_dwcore_InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname,
90
dwc_terms_institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname,
91
dwc_dwcore_GlobalUniqueIdentifier,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,
92
dwc_terms_recordNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/1,
93
conceptual_darwin_2003_1_0_FieldNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)
94
-----
95
SELECT count(*) FROM ""SpeciesLink"".specimens
96
WHERE COALESCE(""dwc_curatorial_FieldNumber"", ""dwc_terms_fieldNumber"", ""conceptual_darwin_2003_1_0_FieldNumber"") != ""dwc_terms_recordNumber""
97
-----"
98
dwc_curatorial_FieldNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)
99
-----
100
SELECT count(*) FROM ""SpeciesLink"".specimens
101
WHERE COALESCE(""dwc_curatorial_FieldNumber"", ""dwc_terms_fieldNumber"", ""conceptual_darwin_2003_1_0_FieldNumber"") != ""dwc_terms_recordNumber""
102
-----"
103
dwc_terms_fieldNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)
104
-----
105
SELECT count(*) FROM ""SpeciesLink"".specimens
106
WHERE COALESCE(""dwc_curatorial_FieldNumber"", ""dwc_terms_fieldNumber"", ""conceptual_darwin_2003_1_0_FieldNumber"") != ""dwc_terms_recordNumber""
107
-----"
108
conceptual_darwin_2003_1_0_CollectorNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/3,
109
dwc_curatorial_CollectorNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/3,
110
conceptual_darwin_2003_1_0_ScientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2,
111
dwc_dwcore_ScientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2,
112
dwc_terms_scientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2,
113
conceptual_darwin_2003_1_0_IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first,
114
dwc_curatorial_IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first,
115
dwc_terms_identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first,
116
conceptual_darwin_2003_1_0_IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/middlename/_namePart/middle,
117
dwc_curatorial_IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/middlename/_namePart/middle,
118
dwc_terms_identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/middlename/_namePart/middle,
119
conceptual_darwin_2003_1_0_IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/surname/_namePart/last,
120
dwc_curatorial_IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/surname/_namePart/last,
121
dwc_terms_identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/surname/_namePart/last,
122
conceptual_darwin_2003_1_0_ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
123
dwc_dwcore_ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
124
dwc_terms_scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
125
dwc_terms_scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname/_alt/1",
126
conceptual_darwin_2003_1_0_ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname/_alt/2",
127
dwc_dwcore_AuthorYearOfScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname/_alt/3",
128
conceptual_darwin_2003_1_0_Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last",
129
dwc_dwcore_InfraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last",
130
dwc_terms_infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last",
131
conceptual_darwin_2003_1_0_Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
132
dwc_dwcore_SpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
133
dwc_terms_specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
134
conceptual_darwin_2003_1_0_Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
135
dwc_dwcore_Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
136
dwc_terms_genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
137
conceptual_darwin_2003_1_0_Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
138
dwc_dwcore_Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
139
dwc_terms_family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
140
conceptual_darwin_2003_1_0_Order,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",
141
dwc_dwcore_Order,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",
142
dwc_terms_order,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",
143
conceptual_darwin_2003_1_0_Class,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",
144
dwc_dwcore_Class,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",
145
dwc_terms_class,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",
146
conceptual_darwin_2003_1_0_Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",
147
dwc_dwcore_Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",
148
dwc_terms_phylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",
149
conceptual_darwin_2003_1_0_Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
150
dwc_dwcore_Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
151
dwc_terms_kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
152
dwc_terms_dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_*/date/_dateRangeStart/value,
153
conceptual_darwin_2003_1_0_DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
154
conceptual_darwin_2003_1_0_MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
155
conceptual_darwin_2003_1_0_YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
156
dwc_dwcore_Remarks,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/notes,
157
conceptual_darwin_2003_1_0_Collector,/location/locationevent/taxonoccurrence/verbatimcollectorname,
158
dwc_dwcore_Collector,/location/locationevent/taxonoccurrence/verbatimcollectorname,
159
dwc_terms_recordedBy,/location/locationevent/taxonoccurrence/verbatimcollectorname,
160
conceptual_darwin_2003_1_0_CatalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
161
dwc_dwcore_CatalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
162
dwc_terms_catalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
163
conceptual_darwin_2003_1_0_MaximumDepth,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
164
dwc_dwcore_MaximumDepthInMeters,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
165
dwc_terms_maximumDepthInMeters,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
166
conceptual_darwin_2003_1_0_MinimumDepth,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
167
dwc_dwcore_MinimumDepthInMeters,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
168
dwc_terms_minimumDepthInMeters,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
169
conceptual_darwin_2003_1_0_Locality,/location/locationnarrative/_merge/1,
170
dwc_dwcore_Locality,/location/locationnarrative/_merge/1,
171
dwc_terms_locality,/location/locationnarrative/_merge/1,
172
conceptual_darwin_2003_1_0_BasisOfRecord,,** No join mapping for BasisOfRecord ** 
173
conceptual_darwin_2003_1_0_DateLastModified,,** No join mapping for dcterms:modified ** 
174
conceptual_darwin_2003_1_0_JulianDay,,** No join mapping for JulianDay/_alt/1 ** 
175
conceptual_darwin_2003_1_0_PreparationType,,** No join mapping for preparations ** 
176
conceptual_darwin_2003_1_0_PreviousCatalogNumber,,** No join mapping for otherCatalogNumbers ** 
177
conceptual_darwin_2003_1_0_RelatedCatalogItem,,** No join mapping for relatedResourceID ** 
178
conceptual_darwin_2003_1_0_RelationshipType,,** No join mapping for relationshipOfResource ** 
179
conceptual_darwin_2003_1_0_TimeOfDay,,** No join mapping for eventTime ** 
180
conceptual_darwin_2003_1_0_TypeStatus,,** No join mapping for TypeStatus ** 
181
dwc_curatorial_TypeStatus,,** No join mapping for TypeStatus ** 
182
dwc_dwcore_BasisOfRecord,,** No join mapping for BasisOfRecord ** 
183
dwc_dwcore_DateLastModified,,** No join mapping for dcterms:modified ** 
184
dwc_dwcore_DayOfYear,,** No join mapping for JulianDay/_alt/2 ** 
185
dwc_terms_basisOfRecord,,** No join mapping for basisOfRecord ** 
186
dwc_terms_day,,** No join mapping for day ** 
187
dwc_terms_endDayOfYear,,** No join mapping for endDayOfYear ** 
188
dwc_terms_eventTime,,** No join mapping for eventTime ** 
189
dwc_terms_month,,** No join mapping for month ** 
190
dwc_terms_occurrenceRemarks,,** No join mapping for occurrenceRemarks ** 
191
dwc_terms_otherCatalogNumbers,,** No join mapping for otherCatalogNumbers ** 
192
dwc_terms_preparations,,** No join mapping for preparations ** 
193
dwc_terms_startDayOfYear,,** No join mapping for startDayOfYear ** 
194
dwc_terms_typeStatus,,** No join mapping for typeStatus ** 
195
dwc_terms_year,,** No join mapping for year ** 
196
http__purl_org_dc_terms_modified,,** No join mapping for dcterms:modified ** 
inputs/SpeciesLink/Specimen/test.xml.ref
11 11
                            <_join>
12 12
                                <1>
13 13
                                    <_alt>
14
                                        <0>$dwc_dwcore_InstitutionCode</0>
15
                                        <1>$dwc_terms_institutionCode</1>
16
                                        <2>$conceptual_darwin_2003_1_0_InstitutionCode</2>
14
                                        <0>$conceptual_darwin_2003_1_0_InstitutionCode</0>
15
                                        <1>$dwc_dwcore_InstitutionCode</1>
16
                                        <2>$dwc_terms_institutionCode</2>
17 17
                                    </_alt>
18 18
                                </1>
19 19
                                <2>
20 20
                                    <_join>
21 21
                                        <1>
22 22
                                            <_alt>
23
                                                <0>$dwc_dwcore_CollectionCode</0>
24
                                                <1>$dwc_terms_collectionCode</1>
25
                                                <2>$conceptual_darwin_2003_1_0_CollectionCode</2>
23
                                                <0>$conceptual_darwin_2003_1_0_CollectionCode</0>
24
                                                <1>$dwc_dwcore_CollectionCode</1>
25
                                                <2>$dwc_terms_collectionCode</2>
26 26
                                            </_alt>
27 27
                                        </1>
28 28
                                        <2>$dwc_terms_collectionID</2>
......
30 30
                                </2>
31 31
                                <3>
32 32
                                    <_alt>
33
                                        <0>$dwc_dwcore_CatalogNumber</0>
34
                                        <1>$dwc_terms_catalogNumber</1>
35
                                        <2>$conceptual_darwin_2003_1_0_CatalogNumber</2>
33
                                        <0>$conceptual_darwin_2003_1_0_CatalogNumber</0>
34
                                        <1>$dwc_dwcore_CatalogNumber</1>
35
                                        <2>$dwc_terms_catalogNumber</2>
36 36
                                    </_alt>
37 37
                                </3>
38 38
                            </_join>
......
226 226
                            <rank>county</rank>
227 227
                            <placename>
228 228
                                <_alt>
229
                                    <0>$dwc_dwcore_County</0>
230
                                    <1>$dwc_terms_county</1>
231
                                    <2>$conceptual_darwin_2003_1_0_County</2>
229
                                    <0>$conceptual_darwin_2003_1_0_County</0>
230
                                    <1>$dwc_dwcore_County</1>
231
                                    <2>$dwc_terms_county</2>
232 232
                                </_alt>
233 233
                            </placename>
234 234
                            <parent_id>
......
236 236
                                    <rank>stateProvince</rank>
237 237
                                    <placename>
238 238
                                        <_alt>
239
                                            <0>$dwc_dwcore_StateProvince</0>
240
                                            <1>$dwc_terms_stateProvince</1>
241
                                            <2>$conceptual_darwin_2003_1_0_StateProvince</2>
239
                                            <0>$conceptual_darwin_2003_1_0_StateProvince</0>
240
                                            <1>$dwc_dwcore_StateProvince</1>
241
                                            <2>$dwc_terms_stateProvince</2>
242 242
                                        </_alt>
243 243
                                    </placename>
244 244
                                    <parent_id>
......
246 246
                                            <rank>country</rank>
247 247
                                            <placename>
248 248
                                                <_alt>
249
                                                    <0>$dwc_dwcore_Country</0>
250
                                                    <1>$dwc_terms_country</1>
251
                                                    <2>$conceptual_darwin_2003_1_0_Country</2>
249
                                                    <0>$conceptual_darwin_2003_1_0_Country</0>
250
                                                    <1>$dwc_dwcore_Country</1>
251
                                                    <2>$dwc_terms_country</2>
252 252
                                                </_alt>
253 253
                                            </placename>
254 254
                                            <parent_id>
......
256 256
                                                    <rank>continent</rank>
257 257
                                                    <placename>
258 258
                                                        <_alt>
259
                                                            <0>$dwc_dwcore_Continent</0>
260
                                                            <1>$dwc_terms_continent</1>
261
                                                            <2>$conceptual_darwin_2003_1_0_ContinentOcean</2>
259
                                                            <0>$conceptual_darwin_2003_1_0_ContinentOcean</0>
260
                                                            <1>$dwc_dwcore_Continent</1>
261
                                                            <2>$dwc_terms_continent</2>
262 262
                                                        </_alt>
263 263
                                                    </placename>
264 264
                                                </namedplace>
......
300 300
                            </collectiondate>
301 301
                            <count>
302 302
                                <_alt>
303
                                    <0>$dwc_curatorial_IndividualCount</0>
304
                                    <1>$dwc_terms_individualCount</1>
305
                                    <2>$conceptual_darwin_2003_1_0_IndividualCount</2>
303
                                    <0>$conceptual_darwin_2003_1_0_IndividualCount</0>
304
                                    <1>$dwc_curatorial_IndividualCount</1>
305
                                    <2>$dwc_terms_individualCount</2>
306 306
                                </_alt>
307 307
                            </count>
308 308
                            <notes>$conceptual_darwin_2003_1_0_Notes</notes>
......
312 312
                                        <1>$dwc_terms_recordNumber</1>
313 313
                                        <2>
314 314
                                            <_alt>
315
                                                <0>$dwc_curatorial_FieldNumber</0>
316
                                                <1>$dwc_terms_fieldNumber</1>
317
                                                <2>$conceptual_darwin_2003_1_0_FieldNumber</2>
315
                                                <0>$conceptual_darwin_2003_1_0_FieldNumber</0>
316
                                                <1>$dwc_curatorial_FieldNumber</1>
317
                                                <2>$dwc_terms_fieldNumber</2>
318 318
                                            </_alt>
319 319
                                        </2>
320 320
                                        <3>
321 321
                                            <_alt>
322
                                                <0>$dwc_curatorial_CollectorNumber</0>
323
                                                <1>$conceptual_darwin_2003_1_0_CollectorNumber</1>
322
                                                <0>$conceptual_darwin_2003_1_0_CollectorNumber</0>
323
                                                <1>$dwc_curatorial_CollectorNumber</1>
324 324
                                            </_alt>
325 325
                                        </3>
326 326
                                    </_alt>
......
334 334
                                    </userdefined_id>
335 335
                                    <definedvalue>
336 336
                                        <_alt>
337
                                            <0>$dwc_dwcore_Sex</0>
338
                                            <1>$dwc_terms_sex</1>
339
                                            <2>$conceptual_darwin_2003_1_0_Sex</2>
337
                                            <0>$conceptual_darwin_2003_1_0_Sex</0>
338
                                            <1>$dwc_dwcore_Sex</1>
339
                                            <2>$dwc_terms_sex</2>
340 340
                                        </_alt>
341 341
                                    </definedvalue>
342 342
                                </definedvalue>
343 343
                                <specimenreplicate>
344 344
                                    <catalognumber_dwc>
345 345
                                        <_alt>
346
                                            <0>$dwc_dwcore_CatalogNumber</0>
347
                                            <1>$dwc_terms_catalogNumber</1>
348
                                            <2>$conceptual_darwin_2003_1_0_CatalogNumber</2>
346
                                            <0>$conceptual_darwin_2003_1_0_CatalogNumber</0>
347
                                            <1>$dwc_dwcore_CatalogNumber</1>
348
                                            <2>$dwc_terms_catalogNumber</2>
349 349
                                        </_alt>
350 350
                                    </catalognumber_dwc>
351 351
                                    <collectioncode_dwc>
352 352
                                        <_join>
353 353
                                            <1>
354 354
                                                <_alt>
355
                                                    <0>$dwc_dwcore_CollectionCode</0>
356
                                                    <1>$dwc_terms_collectionCode</1>
357
                                                    <2>$conceptual_darwin_2003_1_0_CollectionCode</2>
355
                                                    <0>$conceptual_darwin_2003_1_0_CollectionCode</0>
356
                                                    <1>$dwc_dwcore_CollectionCode</1>
357
                                                    <2>$dwc_terms_collectionCode</2>
358 358
                                                </_alt>
359 359
                                            </1>
360 360
                                            <2>$dwc_terms_collectionID</2>
......
364 364
                                        <party>
365 365
                                            <organizationname>
366 366
                                                <_alt>
367
                                                    <0>$dwc_dwcore_InstitutionCode</0>
368
                                                    <1>$dwc_terms_institutionCode</1>
369
                                                    <2>$conceptual_darwin_2003_1_0_InstitutionCode</2>
367
                                                    <0>$conceptual_darwin_2003_1_0_InstitutionCode</0>
368
                                                    <1>$dwc_dwcore_InstitutionCode</1>
369
                                                    <2>$dwc_terms_institutionCode</2>
370 370
                                                </_alt>
371 371
                                            </organizationname>
372 372
                                        </party>
......
382 382
                                        <1>$dwc_terms_recordNumber</1>
383 383
                                        <2>
384 384
                                            <_alt>
385
                                                <0>$dwc_curatorial_FieldNumber</0>
386
                                                <1>$dwc_terms_fieldNumber</1>
387
                                                <2>$conceptual_darwin_2003_1_0_FieldNumber</2>
385
                                                <0>$conceptual_darwin_2003_1_0_FieldNumber</0>
386
                                                <1>$dwc_curatorial_FieldNumber</1>
387
                                                <2>$dwc_terms_fieldNumber</2>
388 388
                                            </_alt>
389 389
                                        </2>
390 390
                                        <3>
391 391
                                            <_alt>
392
                                                <0>$dwc_curatorial_CollectorNumber</0>
393
                                                <1>$conceptual_darwin_2003_1_0_CollectorNumber</1>
392
                                                <0>$conceptual_darwin_2003_1_0_CollectorNumber</0>
393
                                                <1>$dwc_curatorial_CollectorNumber</1>
394 394
                                            </_alt>
395 395
                                        </3>
396 396
                                    </_alt>
397 397
                                </1>
398 398
                                <2>
399 399
                                    <_alt>
400
                                        <0>$dwc_dwcore_ScientificName</0>
401
                                        <1>$dwc_terms_scientificName</1>
402
                                        <2>$conceptual_darwin_2003_1_0_ScientificName</2>
400
                                        <0>$conceptual_darwin_2003_1_0_ScientificName</0>
401
                                        <1>$dwc_dwcore_ScientificName</1>
402
                                        <2>$dwc_terms_scientificName</2>
403 403
                                    </_alt>
404 404
                                </2>
405 405
                            </_alt>
......
411 411
                                        <_namePart>
412 412
                                            <first>
413 413
                                                <_alt>
414
                                                    <0>$dwc_curatorial_IdentifiedBy</0>
415
                                                    <1>$dwc_terms_identifiedBy</1>
416
                                                    <2>$conceptual_darwin_2003_1_0_IdentifiedBy</2>
414
                                                    <0>$conceptual_darwin_2003_1_0_IdentifiedBy</0>
415
                                                    <1>$dwc_curatorial_IdentifiedBy</1>
416
                                                    <2>$dwc_terms_identifiedBy</2>
417 417
                                                </_alt>
418 418
                                            </first>
419 419
                                        </_namePart>
......
422 422
                                        <_namePart>
423 423
                                            <middle>
424 424
                                                <_alt>
425
                                                    <0>$dwc_curatorial_IdentifiedBy</0>
426
                                                    <1>$dwc_terms_identifiedBy</1>
427
                                                    <2>$conceptual_darwin_2003_1_0_IdentifiedBy</2>
425
                                                    <0>$conceptual_darwin_2003_1_0_IdentifiedBy</0>
426
                                                    <1>$dwc_curatorial_IdentifiedBy</1>
427
                                                    <2>$dwc_terms_identifiedBy</2>
428 428
                                                </_alt>
429 429
                                            </middle>
430 430
                                        </_namePart>
......
433 433
                                        <_namePart>
434 434
                                            <last>
435 435
                                                <_alt>
436
                                                    <0>$dwc_curatorial_IdentifiedBy</0>
437
                                                    <1>$dwc_terms_identifiedBy</1>
438
                                                    <2>$conceptual_darwin_2003_1_0_IdentifiedBy</2>
436
                                                    <0>$conceptual_darwin_2003_1_0_IdentifiedBy</0>
437
                                                    <1>$dwc_curatorial_IdentifiedBy</1>
438
                                                    <2>$dwc_terms_identifiedBy</2>
439 439
                                                </_alt>
440 440
                                            </last>
441 441
                                        </_namePart>
......
449 449
                                            <rank>binomial</rank>
450 450
                                            <plantname>
451 451
                                                <_alt>
452
                                                    <0>$dwc_dwcore_ScientificName</0>
453
                                                    <1>$dwc_terms_scientificName</1>
454
                                                    <2>$conceptual_darwin_2003_1_0_ScientificName</2>
452
                                                    <0>$conceptual_darwin_2003_1_0_ScientificName</0>
453
                                                    <1>$dwc_dwcore_ScientificName</1>
454
                                                    <2>$dwc_terms_scientificName</2>
455 455
                                                </_alt>
456 456
                                            </plantname>
457 457
                                            <parent_id>
......
469 469
                                                            <rank>subspecies</rank>
470 470
                                                            <plantname>
471 471
                                                                <_alt>
472
                                                                    <0>$dwc_dwcore_InfraspecificEpithet</0>
473
                                                                    <1>$dwc_terms_infraspecificEpithet</1>
474
                                                                    <2>$conceptual_darwin_2003_1_0_Subspecies</2>
472
                                                                    <0>$conceptual_darwin_2003_1_0_Subspecies</0>
473
                                                                    <1>$dwc_dwcore_InfraspecificEpithet</1>
474
                                                                    <2>$dwc_terms_infraspecificEpithet</2>
475 475
                                                                </_alt>
476 476
                                                            </plantname>
477 477
                                                            <parent_id>
......
489 489
                                                                            <rank>genus</rank>
490 490
                                                                            <plantname>
491 491
                                                                                <_alt>
492
                                                                                    <0>$dwc_dwcore_Genus</0>
493
                                                                                    <1>$dwc_terms_genus</1>
494
                                                                                    <2>$conceptual_darwin_2003_1_0_Genus</2>
492
                                                                                    <0>$conceptual_darwin_2003_1_0_Genus</0>
493
                                                                                    <1>$dwc_dwcore_Genus</1>
494
                                                                                    <2>$dwc_terms_genus</2>
495 495
                                                                                </_alt>
496 496
                                                                            </plantname>
497 497
                                                                            <parent_id>
......
499 499
                                                                                    <rank>family</rank>
500 500
                                                                                    <plantname>
501 501
                                                                                        <_alt>
502
                                                                                            <0>$dwc_dwcore_Family</0>
503
                                                                                            <1>$dwc_terms_family</1>
504
                                                                                            <2>$conceptual_darwin_2003_1_0_Family</2>
502
                                                                                            <0>$conceptual_darwin_2003_1_0_Family</0>
503
                                                                                            <1>$dwc_dwcore_Family</1>
504
                                                                                            <2>$dwc_terms_family</2>
505 505
                                                                                        </_alt>
506 506
                                                                                    </plantname>
507 507
                                                                                    <parent_id>
......
509 509
                                                                                            <rank>order</rank>
510 510
                                                                                            <plantname>
511 511
                                                                                                <_alt>
512
                                                                                                    <0>$dwc_dwcore_Order</0>
513
                                                                                                    <1>$dwc_terms_order</1>
514
                                                                                                    <2>$conceptual_darwin_2003_1_0_Order</2>
512
                                                                                                    <0>$conceptual_darwin_2003_1_0_Order</0>
513
                                                                                                    <1>$dwc_dwcore_Order</1>
514
                                                                                                    <2>$dwc_terms_order</2>
515 515
                                                                                                </_alt>
516 516
                                                                                            </plantname>
517 517
                                                                                            <parent_id>
......
519 519
                                                                                                    <rank>class</rank>
520 520
                                                                                                    <plantname>
521 521
                                                                                                        <_alt>
522
                                                                                                            <0>$dwc_dwcore_Class</0>
523
                                                                                                            <1>$dwc_terms_class</1>
524
                                                                                                            <2>$conceptual_darwin_2003_1_0_Class</2>
522
                                                                                                            <0>$conceptual_darwin_2003_1_0_Class</0>
523
                                                                                                            <1>$dwc_dwcore_Class</1>
524
                                                                                                            <2>$dwc_terms_class</2>
525 525
                                                                                                        </_alt>
526 526
                                                                                                    </plantname>
527 527
                                                                                                    <parent_id>
......
529 529
                                                                                                            <rank>subkingdom</rank>
530 530
                                                                                                            <plantname>
531 531
                                                                                                                <_alt>
532
                                                                                                                    <0>$dwc_dwcore_Phylum</0>
533
                                                                                                                    <1>$dwc_terms_phylum</1>
534
                                                                                                                    <2>$conceptual_darwin_2003_1_0_Phylum</2>
532
                                                                                                                    <0>$conceptual_darwin_2003_1_0_Phylum</0>
533
                                                                                                                    <1>$dwc_dwcore_Phylum</1>
534
                                                                                                                    <2>$dwc_terms_phylum</2>
535 535
                                                                                                                </_alt>
536 536
                                                                                                            </plantname>
537 537
                                                                                                            <parent_id>
......
539 539
                                                                                                                    <rank>kingdom</rank>
540 540
                                                                                                                    <plantname>
541 541
                                                                                                                        <_alt>
542
                                                                                                                            <0>$dwc_dwcore_Kingdom</0>
543
                                                                                                                            <1>$dwc_terms_kingdom</1>
544
                                                                                                                            <2>$conceptual_darwin_2003_1_0_Kingdom</2>
542
                                                                                                                            <0>$conceptual_darwin_2003_1_0_Kingdom</0>
543
                                                                                                                            <1>$dwc_dwcore_Kingdom</1>
544
                                                                                                                            <2>$dwc_terms_kingdom</2>
545 545
                                                                                                                        </_alt>
546 546
                                                                                                                    </plantname>
547 547
                                                                                                                </plantname>
......
600 600
                        </taxondetermination>
601 601
                        <verbatimcollectorname>
602 602
                            <_alt>
603
                                <0>$dwc_dwcore_Collector</0>
604
                                <1>$conceptual_darwin_2003_1_0_Collector</1>
603
                                <0>$conceptual_darwin_2003_1_0_Collector</0>
604
                                <1>$dwc_dwcore_Collector</1>
605 605
                                <2>$dwc_terms_recordedBy</2>
606 606
                            </_alt>
607 607
                        </verbatimcollectorname>
......
651 651
                </locationevent>
652 652
                <locationnarrative>
653 653
                    <_alt>
654
                        <0>$dwc_dwcore_Locality</0>
655
                        <1>$dwc_terms_locality</1>
656
                        <2>$conceptual_darwin_2003_1_0_Locality</2>
654
                        <0>$conceptual_darwin_2003_1_0_Locality</0>
655
                        <1>$dwc_dwcore_Locality</1>
656
                        <2>$dwc_terms_locality</2>
657 657
                    </_alt>
658 658
                </locationnarrative>
659 659
            </location>
inputs/SpeciesLink/Specimen/new_terms.csv
1
AuthorYearOfScientificName
2
DayOfYear
1
dwc_dwcore_GlobalUniqueIdentifier
2
dwc_dwcore_DateLastModified
3
dwc_dwcore_BasisOfRecord
4
dwc_dwcore_InstitutionCode
5
dwc_dwcore_CollectionCode
6
dwc_dwcore_CatalogNumber
7
dwc_dwcore_Remarks
8
dwc_dwcore_ScientificName
9
dwc_dwcore_Kingdom
10
dwc_dwcore_Phylum
11
dwc_dwcore_Class
12
dwc_dwcore_Order
13
dwc_dwcore_Family
14
dwc_dwcore_Genus
15
dwc_dwcore_SpecificEpithet
16
dwc_dwcore_InfraspecificEpithet
17
dwc_dwcore_AuthorYearOfScientificName
18
dwc_dwcore_Continent
19
dwc_dwcore_Country
20
dwc_dwcore_StateProvince
21
dwc_dwcore_County
22
dwc_dwcore_Locality
23
dwc_dwcore_MinimumElevationInMeters
24
dwc_dwcore_MaximumElevationInMeters
25
dwc_dwcore_MinimumDepthInMeters
26
dwc_dwcore_MaximumDepthInMeters
27
dwc_dwcore_DayOfYear
28
dwc_dwcore_Collector
29
dwc_dwcore_Sex
30
dwc_curatorial_IdentifiedBy
31
dwc_curatorial_CollectorNumber
32
dwc_curatorial_FieldNumber
33
dwc_curatorial_TypeStatus
34
dwc_curatorial_IndividualCount
35
dwc_geospatial_DecimalLatitude
36
dwc_geospatial_DecimalLongitude
37
dwc_geospatial_VerbatimLatitude
38
dwc_geospatial_VerbatimLongitude
39
http__purl_org_dc_terms_modified
40
dwc_terms_collectionID
41
dwc_terms_institutionCode
42
dwc_terms_collectionCode
43
dwc_terms_basisOfRecord
44
dwc_terms_identifiedBy
45
dwc_terms_dateIdentified
46
dwc_terms_typeStatus
47
dwc_terms_catalogNumber
48
dwc_terms_occurrenceRemarks
49
dwc_terms_recordNumber
50
dwc_terms_recordedBy
51
dwc_terms_individualCount
52
dwc_terms_sex
53
dwc_terms_preparations
54
dwc_terms_otherCatalogNumbers
55
dwc_terms_eventTime
56
dwc_terms_startDayOfYear
57
dwc_terms_endDayOfYear
58
dwc_terms_year
59
dwc_terms_month
60
dwc_terms_day
61
dwc_terms_fieldNumber
62
dwc_terms_continent
63
dwc_terms_country
64
dwc_terms_stateProvince
65
dwc_terms_county
66
dwc_terms_locality
67
dwc_terms_minimumElevationInMeters
68
dwc_terms_maximumElevationInMeters
69
dwc_terms_minimumDepthInMeters
70
dwc_terms_maximumDepthInMeters
71
dwc_terms_verbatimLatitude
72
dwc_terms_verbatimLongitude
73
dwc_terms_decimalLatitude
74
dwc_terms_decimalLongitude
75
dwc_terms_coordinateUncertaintyInMeters
76
dwc_terms_scientificName
77
dwc_terms_kingdom
78
dwc_terms_phylum
79
dwc_terms_class
80
dwc_terms_order
81
dwc_terms_family
82
dwc_terms_genus
83
dwc_terms_specificEpithet
84
dwc_terms_infraspecificEpithet
85
dwc_terms_scientificNameAuthorship
86
conceptual_darwin_2003_1_0_DateLastModified
87
conceptual_darwin_2003_1_0_InstitutionCode
88
conceptual_darwin_2003_1_0_CollectionCode
89
conceptual_darwin_2003_1_0_CatalogNumber
90
conceptual_darwin_2003_1_0_ScientificName
91
conceptual_darwin_2003_1_0_BasisOfRecord
92
conceptual_darwin_2003_1_0_Kingdom
93
conceptual_darwin_2003_1_0_Phylum
94
conceptual_darwin_2003_1_0_Class
95
conceptual_darwin_2003_1_0_Order
96
conceptual_darwin_2003_1_0_Family
97
conceptual_darwin_2003_1_0_Genus
98
conceptual_darwin_2003_1_0_Species
99
conceptual_darwin_2003_1_0_Subspecies
100
conceptual_darwin_2003_1_0_ScientificNameAuthor
101
conceptual_darwin_2003_1_0_IdentifiedBy
102
conceptual_darwin_2003_1_0_YearIdentified
103
conceptual_darwin_2003_1_0_MonthIdentified
104
conceptual_darwin_2003_1_0_DayIdentified
105
conceptual_darwin_2003_1_0_TypeStatus
106
conceptual_darwin_2003_1_0_CollectorNumber
107
conceptual_darwin_2003_1_0_FieldNumber
108
conceptual_darwin_2003_1_0_Collector
109
conceptual_darwin_2003_1_0_YearCollected
110
conceptual_darwin_2003_1_0_MonthCollected
111
conceptual_darwin_2003_1_0_DayCollected
112
conceptual_darwin_2003_1_0_JulianDay
113
conceptual_darwin_2003_1_0_TimeOfDay
114
conceptual_darwin_2003_1_0_ContinentOcean
115
conceptual_darwin_2003_1_0_Country
116
conceptual_darwin_2003_1_0_StateProvince
117
conceptual_darwin_2003_1_0_County
118
conceptual_darwin_2003_1_0_Locality
119
conceptual_darwin_2003_1_0_Longitude
120
conceptual_darwin_2003_1_0_Latitude
121
conceptual_darwin_2003_1_0_CoordinatePrecision
122
conceptual_darwin_2003_1_0_BoundingBox
123
conceptual_darwin_2003_1_0_MinimumElevation
124
conceptual_darwin_2003_1_0_MaximumElevation
125
conceptual_darwin_2003_1_0_MinimumDepth
126
conceptual_darwin_2003_1_0_MaximumDepth
127
conceptual_darwin_2003_1_0_Sex
128
conceptual_darwin_2003_1_0_PreparationType
129
conceptual_darwin_2003_1_0_IndividualCount
130
conceptual_darwin_2003_1_0_PreviousCatalogNumber
131
conceptual_darwin_2003_1_0_RelationshipType
132
conceptual_darwin_2003_1_0_RelatedCatalogItem
133
conceptual_darwin_2003_1_0_Notes
inputs/SpeciesLink/Specimen/unmapped_terms.csv
1
dcterms:modified
2
BasisOfRecord
1 3
ScientificNameAuthor/_alt/3
2
ScientificNameAuthor/_alt/2
3
ScientificNameAuthor/_alt/1
4 4
JulianDay/_alt/2
5
JulianDay/_alt/1
6 5
recordNumber/_alt/3
7 6
recordNumber/_alt/2
7
TypeStatus
8
dcterms:modified
9
basisOfRecord
10
typeStatus
11
occurrenceRemarks
8 12
recordNumber/_alt/1
13
preparations
14
otherCatalogNumbers
15
eventTime
16
startDayOfYear
17
endDayOfYear
18
year
19
month
20
day
21
recordNumber/_alt/2
22
ScientificNameAuthor/_alt/1
9 23
dcterms:modified
24
BasisOfRecord
25
ScientificNameAuthor/_alt/2
26
TypeStatus
27
recordNumber/_alt/3
28
recordNumber/_alt/2
29
JulianDay/_alt/1
30
eventTime
31
preparations
32
otherCatalogNumbers
33
relationshipOfResource
34
relatedResourceID

Also available in: Unified diff