MT[Veg+],Veg+,Comments

id,occurrenceID,

establishmentMeans,establishmentMeans,

locality,locality,

language,dcterms:language,

collectionID,collectionID,

occurrenceRemarks,occurrenceRemarks,

type,dcterms:type,

institutionCode,institutionCode,

rights,dcterms:rights,

family,family,

continent,continent,

collectionCode,collectionCode,

datasetName,datasetName,

rightsHolder,dcterms:rightsHolder,

genus,genus,

basisOfRecord,basisOfRecord,

individualCount,individualCount,

countryCode,countryCode,

XAL[Veg+]:/content/record/,Veg+,Comments

darwin:DateLastModified,dcterms:modified,

darwin:InstitutionCode,institutionCode,

darwin:CollectionCode,collectionCode,

darwin:CatalogNumber,catalogNumber,

darwin:ScientificName,scientificName,

darwin:BasisOfRecord,BasisOfRecord,

darwin:Kingdom,kingdom,

darwin:Phylum,phylum,

darwin:Class,class,

darwin:Order,order,

darwin:Family,family,

darwin:Genus,genus,

darwin:Species,specificEpithet,

darwin:Subspecies,infraspecificEpithet,

darwin:ScientificNameAuthor,scientificNameAuthorship,

darwin:IdentifiedBy,identifiedBy,

darwin:YearIdentified,yearIdentified,

darwin:MonthIdentified,monthIdentified,

darwin:DayIdentified,dayIdentified,

darwin:TypeStatus,TypeStatus,

darwin:CollectorNumber,recordNumber/_alt/1,

darwin:FieldNumber,recordNumber/_alt/2,"This historical DwC term (http://rs.tdwg.org/dwc/terms/history/index.htm#fieldNumber-2009-04-24) has close to the same meaning as recordNumber (http://rs.tdwg.org/dwc/terms/#recordNumber). It is also unused: `grep -F ""<darwin:FieldNumber>"" inputs/XAL/src/digir.specimens.xml` returns no lines."

darwin:Collector,recordedBy,

darwin:YearCollected,yearCollected,

darwin:MonthCollected,monthCollected,

darwin:DayCollected,dayCollected,

darwin:JulianDay,day,

darwin:TimeOfDay,eventTime,

darwin:ContinentOcean,continent,

darwin:Country,country,

darwin:StateProvince,stateProvince,

darwin:County,county,

darwin:Locality,locality,

darwin:Longitude,verbatimLongitude,

darwin:Latitude,verbatimLatitude,

darwin:CoordinatePrecision,coordinatePrecision,

darwin:MinimumElevation,minimumElevationInMeters,

darwin:MaximumElevation,maximumElevationInMeters,

darwin:MinimumDepth,minimumDepthInMeters,

darwin:MaximumDepth,maximumDepthInMeters,

darwin:Sex,sex,

darwin:PreparationType,preparations,

darwin:IndividualCount,individualCount,

darwin:PreviousCatalogNumber,otherCatalogNumbers,

darwin:RelationshipType,relationshipOfResource,

darwin:RelatedCatalogItem,relatedResourceID,

darwin:Notes,fieldNotes,

TEAM[Veg+],Veg+,Comments

ID,occurrenceID,

SiteName,projectName,

1haPlotCode,plotName,

ObservationDate,eventDate,

Family,family,

Genus,genus,

SpecificEpithet,specificEpithet,

Collectors,recordedBy,

dbh,diameterBreastHeight,

max_diam,max_diam,

max_diam_pom,max_diam_pom,

ConditionCodes,ConditionCodes,

LocationCodes,LocationCodes,

SamplingPeriod,SamplingPeriod,

Comments,Comments,

SamplingUnitName,SamplingUnitName,

Latitude,verbatimLatitude,

Longitude,verbatimLongitude,

Method,samplingProtocol,

Subplot,subplot,

X_1haPlot,organismX,

Y_1haPlot,organismY,

TreeNumber,tag,

ProtocolVersion,ProtocolVersion,

ResponsibleInstitution,ResponsibleInstitution,

ProtocolLeadScientist,ProtocolLeadScientist,

ProtocolLeadScientistInstitution,ProtocolLeadScientistInstitution,

TEAM[Veg+],Veg+,Comments

ID,occurrenceID,

ObservationDate,eventDate,

Family,family,

Genus,genus,

SpecificEpithet,specificEpithet,

Collectors,recordedBy,

dbh,diameterBreastHeight,

dbh_pom,dbh_pom,

dbh_new,dbh_new,

dbh_new_pom,dbh_new_pom,

ConditionCodes,ConditionCodes,

SamplingPeriod,SamplingPeriod,

Comments,Comments,

SamplingUnitName,SamplingUnitName,

Latitude,verbatimLatitude,

Longitude,verbatimLongitude,

Method,samplingProtocol,

Subplot,subplot,

X_1haPlot,organismX,

Y_1haPlot,organismY,

TreeNumber,tag,

SiteName,projectName,

1haPlotCode,plotName,

ProtocolVersion,ProtocolVersion,

ResponsibleInstitution,ResponsibleInstitution,

ProtocolLeadScientist,ProtocolLeadScientist,

ProtocolLeadScientistInstitution,ProtocolLeadScientistInstitution,

NY[Veg+],Veg+,Comments

key,key,Not used because UniqueNYInternalRecordNumber is a better pkey

DateLastModified,dcterms:modified,

InstitutionCode,institutionCode,

CollectionCode,collectionCode,

CatalogNumber,catalogNumber,

ScientificName,scientificName,

BasisOfRecord,BasisOfRecord,

Kingdom,kingdom,

Phylum,phylum,

Class,class,

Order,order,

Family,family,

Genus,genus,

Species,specificEpithet,

Subspecies,infraspecificEpithet,

ScientificNameAuthor,scientificNameAuthorship,

IdentifiedBy,identifiedBy,

YearIdentified,yearIdentified,

MonthIdentified,monthIdentified,

DayIdentified,dayIdentified,

TypeStatus,TypeStatus,

CollectorNumber,OMIT,"Not used [1], so does not need to be mapped.

[1] The following query returns no rows: SELECT * FROM ""NY"".""Specimen"" WHERE ""CollectorNumber"" IS NOT NULL"

FieldNumber,recordNumber,Usage inconsistent with DwC definition

Collector,recordedBy,

YearCollected,yearCollected,

MonthCollected,monthCollected,

DayCollected,dayCollected,

JulianDay,day,

TimeOfDay,eventTime,

ContinentOcean,continent,

Country,country,

StateProvince,stateProvince,

County,county,

Locality,Locality/_merge/1,

Longitude,verbatimLongitude,

Latitude,verbatimLatitude,

CoordinatePrecision,coordinatePrecision,

BoundingBox,footprintWKT,

MinimumElevation,MinimumElevation/_nullIf:[null=.]/value,

MaximumElevation,maximumElevationInMeters,

MinimumDepth,minimumDepthInMeters,

MaximumDepth,maximumDepthInMeters,

Sex,sex,

PreparationType,preparations,

IndividualCount,individualCount,

PreviousCatalogNumber,otherCatalogNumbers,

RelationshipType,relationshipOfResource,

RelatedCatalogItem,relatedResourceID,

Notes,Notes/_merge/1,

Habitat,habitat,

PlantFungusDescription,"Notes/_merge/2/_label[label=""plant fungus""]/value",

Substrate,"Locality/_merge/2/_label[label=""substrate""]/value",

Vegetation,"Locality/_merge/3/_label[label=""vegetation""]/value",

UniqueNYInternalRecordNumber,occurrenceID,

Madidi[Veg+],Veg+,Comments

Expedition,projectName,

Inventory name,plotName,

Number of inventory (general),Number of inventory (general),

Number of inventory (expedition),Number of inventory (expedition),

"Type Inventory (C, PP, TP)","Type Inventory (C, PP, TP)",

Inventory code,locationID,

Tag number,tag,

Tree number,recordNumber,

Number of subplot,subplot,

Index collector,recordedBy,

Specimen,catalogNumber,

Similar specimen,Similar specimen,

Plot specimen,Plot specimen,

Expedition specimen,Expedition specimen,

Project specimen,Project specimen,

Field family,verbatimFamily,

Field name,verbatimGenus,Often = Genera

Family (revised),family,

Specie+autor,scientificName,

Genera,genus,

Specific epithet,specificEpithet,

Species and morphotypes,Species and morphotypes,"Contains less than ""Specie+autor"""

Autor (revised),scientificNameAuthorship,

Determined by,identifiedBy,

Qualifier,identificationQualifier,

Common name,Common name,

Circumference,Circumference,

Diameter,diameterBreastHeight,

Trunk,authorStemCode,

Total height,height,

Bole height,Bole height,trunk height

Habit,verbatimGrowthForm,

Phenology,Phenology,

Crown position,Crown position,

Crown shape,Crown shape,

Liana presence,lianaInfestation,

Basal area,Basal area,"Would be basalDiameter, but need formula to translate"

Subplot X,organismX,

Subplot Y,organismY,

Plot X,Plot X,

Plot Y,Plot Y,

Observations,fieldNotes,

Madidi[Veg+],Veg+,Comments

Inventory number,Inventory number,Not globally unique

Expedition number,projectID,Consistent (globally unique) between PPM and PT data

Expedition name,projectName,Consistent (globally unique) between PPM and PT data

Number of inventory (expedition),Number of inventory (expedition),The number of the event within the project

Inventory name,plotName,

Inventory code,locationID,

First evaluation,eventDate,

Installed and evaluated by,Installed and evaluated by,"Need a way to store a verbatim list of people, or a function to parse it and insert it iteratively into party"

Collaborators,Collaborators,"Need a way to store a verbatim list of people, or a function to parse it and insert it iteratively into party"

Related Epilocs,Related Epilocs,"It appears to be a list of people, some with #s after them. It doesn't seem like the definition of Epiloc at <http://rithm.wikispaces.com/Tropicos.Epiloc>, which relates to individual specimens, not whole plots."

Area,plotArea,

Number of stems,Number of stems,Do we want to store this data?

Number of trees,Number of trees,Do we want to store this data?

Coordinates,Coordinates,Concatenation of Latitude (DMS) and Longitude (DMS)

Latitude,decimalLatitude,

Longitude,decimalLongitude,

Latitude (DMS),verbatimLatitude,

Longitude (DMS),verbatimLongitude,

Altitude,verbatimElevation,

Minimum altitude,minimumElevationInMeters,

Locality,locality,

Locality description,communityName,Often begins with the text in Vegetation type

Direction,slopeAspect/_alt/1,Part files provide either this field or Direction

Vegetation type,communityID,

Topographical situation,landform,

Slope,slopeGradient,

Soil sample,Soil sample,Always empty

pH acuoso (ISRIC 4–– 1 - 14),ph,

Conductividad electrica (ASPT 6–µS/cm– 1 - 10000),conductivity,

Nitrógeno total (ISRIC 6–%–0.0014),nitrogen,

"Carbón Orgánico (WSP S-9,10–%–0.06)",carbon,

"Materia Orgánica (WSP S-9,10–%–0.1)",organic,

Fósforo disponible (ISRIC 14-2–mg/Kg–1.5),phosphorus,

"Sodio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",sodium,

"Potasio intercambiable (WSP S-5,10–cmolc/Kg–0.0053)",potassium,

"Calcio intercambiable (WSP S-5,10–cmolc/Kg–0.016)",calcium,

"Magnesio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",magnesium,

Acidez intercambiable (ISRIC 11–cmolc/Kg–0.05),acidity,

CIC (ISRIC 11–cmolc/Kg–0.05),cationExchangeCapacity,

Arena (DIN 18 123–%–2.5),sand,

Limo (DIN 18 123–%–1),silt,

Arcilla (DIN 18 123–%–1),clay,

Textural class,texture,

Observaciones,plotNotes,

Orientación/exposicion,slopeAspect/_alt/2,Part files provide either this field or Orientación

UNCC[Veg+],Veg+,Comments

accession,occurrenceID,

herbarium,institutionCode,

family,family,

genus,genus,

species,specificEpithet,

usdaRank,taxonRank/_alt/1,

infrarank,taxonRank/_alt/2,

infraname,infraspecificEpithet,

SciName,scientificName,

authors,scientificNameAuthorship,

collector,Collector/_merge/1,

collector1,Collector/_merge/2,

collector2,Collector/_merge/3,

collector3,Collector/_merge/4,

collectno,recordNumber,

collmonth,monthCollected,

collday,dayCollected,

collyear,yearCollected,

country,country,

state,stateProvince,

county,county,

campus,"fieldNotes/_merge/5/_label[label=""campus""]/value",

leaves,"reproductiveCondition/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"

flower,"reproductiveCondition/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"

fruit,"reproductiveCondition/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"

root,"reproductiveCondition/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"

locality,locality,

habitat,habitat,

comment1,fieldNotes/_merge/1,

comment2,fieldNotes/_merge/2,

comment3,fieldNotes/_merge/3,

comment4,fieldNotes/_merge/4,

loanto,"fieldNotes/_merge/6/_label[label=""loaned to""]/value",

inorout,"fieldNotes/_merge/7/_label[label=""in or out""]/value",

sheetno,associatedMedia,?

cultivated,cultivated,Ignore other values

filler,filler,"Where used, same as family"

ACAD[Veg+],Veg+,Comments

id,occurrenceID,

basisOfRecord,basisOfRecord,

identifiedBy,identifiedBy,

collectionID,collectionID,

class,class,

geodeticDatum,geodeticDatum,

reproductiveCondition,reproductiveCondition,

decimalLongitude,decimalLongitude,

institutionCode,institutionCode,

continent,continent,

recordedBy,recordedBy,

county,county,

order,order,

georeferenceSources,georeferenceSources,

language,dcterms:language,

georeferenceVerificationStatus,georeferenceVerificationStatus,

verbatimElevation,verbatimElevation,

locationRemarks,locationRemarks,

dateIdentified,dateIdentified,

verbatimDepth,verbatimDepth,

municipality,municipality,

infraspecificEpithet,infraspecificEpithet,

modified,dcterms:modified,

type,dcterms:type,

specificEpithet,specificEpithet,

identificationRemarks,identificationRemarks,

rightsHolder,dcterms:rightsHolder,

recordNumber,recordNumber,

eventDate,eventDate,

rights,dcterms:rights,

occurrenceRemarks,occurrenceRemarks,

habitat,habitat,

family,family,

stateProvince,stateProvince,

scientificNameAuthorship,scientificNameAuthorship,

scientificName,scientificName,

taxonRank,taxonRank,

phylum,phylum,

locality,locality,

kingdom,kingdom,

decimalLatitude,decimalLatitude,

genus,genus,

ownerInstitutionCode,ownerInstitutionCode,

collectionCode,collectionCode,

bibliographicCitation,dcterms:bibliographicCitation,

catalogNumber,catalogNumber,

country,country,

dynamicProperties,dynamicProperties,

SALVIAS-CSV[Veg+],Veg+,Comments

OBSERVATION_ID,individualID,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."

PLOT_ID,locationID,

plot_code,plotName,

census_no,censusNumber,"Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not."

census_date,eventDate,"This is for the subplot, not the organism, as all organisms in a subplot have the same value for it. The following query returns no rows:

-----

SELECT ""PLOT_ID"", subplot, count(DISTINCT census_date) AS census_date_count

FROM ""SALVIAS-CSV"".organisms

WHERE subplot IS NOT NULL AND census_date IS NOT NULL

GROUP BY ""PLOT_ID"", subplot

HAVING count(DISTINCT census_date) > 1

-----"

subplot,subplot,

individual_code,recordNumber,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."

ind_id,ind_id,Brad: OMIT

tag1,tag/_alt/1,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."

tag2,previousTag/_alt/1,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."

x_position,organismX,"Brad: These are important, fundamental values of many tree plots"

y_position,organismY,Brad: See comment above for x_position

voucher_string,catalogNumber/_alt/2,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."

coll_number,catalogNumber/_alt/1,Brad: Map instead as for voucher_string

collector_code,collector_code,Brad: OMIT

coll_lastname,recordedBy.surName,"Brad: This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick."

coll_firstname,recordedBy.givenName,Brad: See comment above

det_type,voucherType,"Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."

fam_status,fam_status,Brad: OMIT. This will be determined later by using TNRS.

gen_status,gen_status,Brad: OMIT. This will be determined later by using TNRS.

species_status,species_status,"Brad: OMIT. Except, note that if species_status=3, this indicate that name is a morphospecies and not a standard latin name. Not exactly sure how to use this in BIEN, but could be useful during the name-scrubbing process with TNRS."

family,family,

genus,genus,

specific_epithet,specificEpithet,

specific_authority,scientificNameAuthorship,Brad: This is the author of the scientificName.

infra_rank_1,taxonRank,

infra_ep_1,infraspecificEpithet,

cf_aff,identificationQualifier,"Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."

comments,comments,Brad: OMIT

habit,verbatimGrowthForm,"Brad: This is growth form (tree, shrub, herb, etc.). It is an observation of a trait."

no_of_individuals,individualCount,"Brad: This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."

cover_percent,coverPercent,

intercept_cm,volumeCanopy,"Brad: This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance."

height_m,height/_alt/2,

ht_first_branch_m,heightFirstBranch,

stem_tag1,tag/_alt/2,"Brad: Same as tag1 & tag2, but applied to individual stems. I'm still not clear how to distinguish between methods which tag only individuals trees, and those which tag individual stems."

stem_tag2,previousTag/_alt/2,Brad: see above

stem_dbh,diameterBreastHeight,

basal_diam,basalDiameter,

stem_height_m,height/_alt/1,"Brad: Same as for height, but applies to individuals stems, not trees. Rare."

stem_height_first_branch_m,heightFirstBranch,"Brad: Same as for ht_first_branch_m, but applies to individuals stems, not trees. Rare."

stem_canopy_form,canopyForm,

stem_canopy_position,canopyPosition,

stem_liana_infestation,lianaInfestation,

notes,stemNotes,

orig_family,verbatimFamily,Brad: OMIT

orig_species,verbatimSpecificEpithet,Brad: OMIT

SALVIAS-CSV[Veg+],Veg+,Comments

project,projectName,

PLOT_ID,locationID,"Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."

plot_code,plotName,Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)

major_geo,continent,

country,country,

pol1,stateProvince,Brad: No; pol1=stateProvince

pol2,county,Brad: No pol2=countyParish

locality_description,locality,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"

lat_decimal,decimalLatitude,

long_decimal,decimalLongitude,

elev_m,verbatimElevation,Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick.

elev_max_m,maximumElevationInMeters,

elev_min_m,minimumElevationInMeters,

temp_c,temperature,

precip_mm,precipitation,

slope_aspect,slopeAspect,

slope_gradient,slopeGradient,

clay_percent,"clay/_units:[default=""%"",to=]/value",

silt_percent,"silt/_units:[default=""%"",to=]/value",

sand_percent,"sand/_units:[default=""%"",to=]/value",

organic_percent,"organic/_units:[default=""%"",to=]/value",

pH,ph,"Brad: For all these soil variables, how do we store information on method, units. Seems like an ontological structure would be more appropriate (measurementName, measurementValue, measurementUnits, measurementMethod). Same as BIEN traits table. Something to discuss."

soil_N,"nitrogen/_units:[default=""%"",to=]/value",

soil_P,"phosphorus/_units:[default=""%"",to=]/value/_map:[""<1,5""=0,*=*]/value",

soil_C,"carbon/_units:[default=""%"",to=]/value",

soil_K,"potassium/_units:[default=""%"",to=]/value",

soil_Mg,"magnesium/_units:[default=""%"",to=]/value",

soil_Ca,"calcium/_units:[default=""%"",to=]/value",

soil_Na,"sodium/_units:[default=""%"",to=]/value",

soil_acidity,"acidity/_units:[default=""%"",to=]/value/_map:[""<0.05""=0,*=*]/value",

soil_base,"baseSaturation/_units:[default=""%"",to=]/value",

soil_cation_cap,cationExchangeCapacity,

soil_conductivity,conductivity,

soil_texture,texture,

holdridge_life_zone,communityID,

life_zone_code,communityName,

observation_type,observation_type,"Brad: SALVIAS internal metadata indicating whether the record represents an individual or aggregate observation. Rather than storing, use to decide where to store in VegX.; Aaron: VegX aggregateOrganismObservation table is missing many fields available in individualOrganismObservation, so we're mapping to individualOrganismObservation regardless of observation type"

plot_methodology,samplingProtocol,

plot_area_ha,plotArea,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"

recensused,recensused,"Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a  plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values"

date_start,startDate,

date_finish,endDate,

CVS[Veg+],Veg+,Comments

authorObsCode,fieldNumber,

obsStartDate,startDate,

realLatitude,OMIT,

realLongitude,OMIT,

locationAccuracy-m,coordinateUncertaintyInMeters,

publicLatitude,decimalLatitude,

publicLongitude,decimalLongitude,

confidentialityStatus,confidentialityStatus,

state,stateProvince,

county,county,

currentTaxonName sec Weakley 2006,scientificName,

%cover,coverPercent,

REMIB[Veg+],Veg+,Comments

acronym,collectionCode,

accession_number,occurrenceID,

family,family,

genus,genus,

specificEpithet,specificEpithet,

country,country,

state,stateProvince,

county,county,

locality,locality,

long_deg,verbatimLongitude,

long_min,long_min,

long_sec,long_sec,

lat_deg,verbatimLatitude,

lat_min,lat_min,

lat_sec,lat_sec,

coll_day,dayCollected,

coll_month,monthCollected,

coll_year,yearCollected,

collector,recordedBy,

habitat,habitat,

preparation,preparations,

CTFS[Veg+],Veg+,Comments

FamilyID,FamilyID,

GenusID,GenusID,

SpeciesID,SpeciesID,

SubSpeciesID,SubSpeciesID,

TreeID,TreeID,

StemID,authorStemCode,

MeasureID,individualID,

CensusID,eventID,

DBH,diameterBreastHeight,

HOM,HOM,

PrimaryStem,PrimaryStem,

ExactDate,ExactDate,

StemTag,tag,

StemDescription,StemDescription,

QuadratID,subplot,Not globally unique; unique only within Site

PlotID,locationID,

Tag,tag,

x,organismX,

y,organismY,

SubSpeciesCurrentTaxonFlag,SubSpeciesCurrentTaxonFlag,

SubSpeciesObsoleteTaxonFlag,SubSpeciesObsoleteTaxonFlag,

SubSpeciesName,infraspecificEpithet,

SubSpeciesMnemonic,SubSpeciesMnemonic,

SubSpeciesAuthority,SubSpeciesAuthority,

InfraSpecificLevel,InfraSpecificLevel,

SpeciesCurrentTaxonFlag,SpeciesCurrentTaxonFlag,

SpeciesObsoleteTaxonFlag,SpeciesObsoleteTaxonFlag,

SpeciesReferenceID,SpeciesReferenceID,

SpeciesName,specificEpithet,

SpeciesMnemonic,SpeciesMnemonic,

SpeciesAuthority,scientificNameAuthorship,

IDLevel,IDLevel,

FieldFamily,FieldFamily,

Description,Description,

Genus,genus,

GenusReferenceID,GenusReferenceID,

GenusAuthority,GenusAuthority,

Family,family,

ReferenceID,ReferenceID,

row_num,row_num,

CTFS[Veg+],Veg+,Comments

QuadratID,subplot,Not globally unique; unique only within Site

PlotID,locationID,

QuadratName,OMIT,QuadratID is used for the same purpose

StartX,subplotX,

StartY,subplotY,

DimX,DimX,

DimY,DimY,

CTFS[Veg+],Veg+,Comments

CensusID,eventID,

PlotID,locationID,

PlotCensusNumber,fieldNumber,

StartDate,startDate,

EndDate,endDate,

Description,Description,

CTFS[Veg+],Veg+,Comments

FamilyID,FamilyID,

GenusID,GenusID,

SpeciesID,SpeciesID,

SubSpeciesID,SubSpeciesID,

SpeciesInvID,taxonOccurrenceID,

CensusID,eventID,

PlotID,locationID,

SubSpeciesCurrentTaxonFlag,SubSpeciesCurrentTaxonFlag,

SubSpeciesObsoleteTaxonFlag,SubSpeciesObsoleteTaxonFlag,

SubSpeciesName,infraspecificEpithet,

SubSpeciesMnemonic,SubSpeciesMnemonic,

SubSpeciesAuthority,SubSpeciesAuthority,

InfraSpecificLevel,InfraSpecificLevel,"Not used, as the following query returns zero:

-----

SELECT COUNT(*) FROM ""CTFS"".""InfraspecificEpithet.src""

WHERE ""InfraSpecificLevel"" IS NOT NULL

-----"

SpeciesCurrentTaxonFlag,SpeciesCurrentTaxonFlag,

SpeciesObsoleteTaxonFlag,SpeciesObsoleteTaxonFlag,

SpeciesReferenceID,SpeciesReferenceID,

SpeciesName,specificEpithet,

SpeciesMnemonic,SpeciesMnemonic,

SpeciesAuthority,SpeciesAuthority,

IDLevel,IDLevel,

FieldFamily,FieldFamily,

Description,Description,

Genus,genus,

GenusReferenceID,GenusReferenceID,

GenusAuthority,GenusAuthority,

Family,family,

ReferenceID,ReferenceID,

row_num,row_num,

CTFS[Veg+],Veg+,Comments

CensusID,eventID,

QuadratID,subplot,Not globally unique; unique only within Site

PlotID,locationID,

CTFS[Veg+],Veg+,Comments

CountryID,CountryID,

PlotID,locationID,

PlotName,plotName,

LocationName,locality,

Latitude,verbatimLatitude,

Longitude,verbatimLongitude,

Elevation,verbatimElevation,

ReferenceX,ReferenceX,Rarely used

ReferenceY,ReferenceY,Rarely used

SizeOfSite,plotArea,

ShapeOfSite,footprintWKT,

DescriptionOfSite,locality,

CountryName,country,

row_num,row_num,

FIA[Veg+],Veg+,Comments

TreeTag,tag,

Genus,genus,

SpecificEpithet,specificEpithet,

MeasYear,yearCollected,

MeasMon,monthCollected,

MeasDay,dayCollected,

DecimalLatitude,decimalLatitude,

DecimalLongitude,decimalLongitude,

PlotCD,locationID,

StateProvince,stateProvince,

County,county,

DBH,diameterBreastHeight,

HOM,HOM,

BasalDiameter,basalDiameter,

Height,height,

SALVIAS[Veg+],Veg+,Comments

PlotID,locationID,"Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."

orig_filename,orig_filename,

AccessCode,AccessCode,

project_id,projectID,

PrimOwnerID,PrimOwnerID,

SiteCode,plotName,Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)

SiteName,SiteName,

new_world,new_world,

MajorGeo,continent,

Country,country,

PolDiv1,stateProvince,Brad: No; pol1=stateProvince

pol1_type,pol1_type,

pol2,county,Brad: No pol2=countyParish

pol2_type,pol2_type,

lat_string,lat_string,

long_string,long_string,

LatDec,decimalLatitude,

LongDec,decimalLongitude,

lat_long_accuracy,lat_long_accuracy,

Elev,verbatimElevation,Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick.

elev_max_m,maximumElevationInMeters,

elev_min_m,minimumElevationInMeters,

Precip,precipitation,

ElevSource,ElevSource,

Temp,temperature,

PrecipSource,PrecipSource,

TempSource,TempSource,

bearing,bearing,

slope_aspect,slopeAspect,

slope_gradient,slopeGradient,

clay_percent,"clay/_units:[default=""%"",to=]/value",

silt_percent,"silt/_units:[default=""%"",to=]/value",

sand_percent,"sand/_units:[default=""%"",to=]/value",

pH,ph,"Brad: For all these soil variables, how do we store information on method, units. Seems like an ontological structure would be more appropriate (measurementName, measurementValue, measurementUnits, measurementMethod). Same as BIEN traits table. Something to discuss."

soil_N,"nitrogen/_units:[default=""%"",to=]/value",

soil_P,"phosphorus/_units:[default=""%"",to=]/value/_map:[""<1,5""=0,*=*]/value",

soil_C,"carbon/_units:[default=""%"",to=]/value",

soil_K,"potassium/_units:[default=""%"",to=]/value",

soil_Mg,"magnesium/_units:[default=""%"",to=]/value",

soil_Ca,"calcium/_units:[default=""%"",to=]/value",

soil_Na,"sodium/_units:[default=""%"",to=]/value",

soil_acidity,"acidity/_units:[default=""%"",to=]/value/_map:[""<0.05""=0,*=*]/value",

soil_base,"baseSaturation/_units:[default=""%"",to=]/value",

soil_cation_cap,cationExchangeCapacity,

soil_conductivity,conductivity,

organic_percent,"organic/_units:[default=""%"",to=]/value",

soil_texture,"texture/_units:[default=""%"",to=]/value",

RevisionComments,RevisionComments,

Locality_Description,locality,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"

topography_desc,topography_desc,

vegetation_1,vegetation_1,

vegetation_2,vegetation_2,

Habitat,habitat,

life_zone_code,communityID,

life_zone,communityName,

PlotMethod,samplingProtocol,

MethodCode,MethodCode,

plot_area_ha,plotArea,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"

recensused,recensused,"Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a  plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values"

date_start,startDate,

date_finish,endDate,

plot_administrator,plot_administrator,

plot_notes,plotNotes,

tmp_del,tmp_del,

Country_index,Country_index,

PrimOwnerID_index,PrimOwnerID_index,

plot_administrator_index,plot_administrator_index,

project_id_index,project_id_index,

SALVIAS[Veg+],Veg+,Comments

project_id,projectID,

project_name,projectName,

project_pi,project_pi,

allow_download_all,allow_download_all,

ipr_specific,ipr_specific,

ipr_specific_updated,ipr_specific_updated,

project_name_index,project_name_index,

on_project_list_index,on_project_list_index,

project_distinct_index,project_distinct_index,

SALVIAS[Veg+],Veg+,Comments

stem_id,stemID,

origrecord_id_stems,origrecord_id_stems,

PlotObsID,individualID,

NoInd,stemCount,

basal_diam,basalDiameter,

stem_dbh,diameterBreastHeight,

gentry_dbh,diameterBreastHeightGentry,

stem_notes,stemNotes,

stem_tag1,tag,

stem_tag2,previousTag,

stem_height_m,height,"Brad: Same as for height, but applies to individuals stems, not trees. Rare."

stem_height_first_branch_m,heightFirstBranch,"Brad: Same as for ht_first_branch_m, but applies to individuals stems, not trees. Rare."

stem_canopy_form,canopyForm,

stem_canopy_position,canopyPosition,

stem_liana_infestation,lianaInfestation,

tmp_del,tmp_del,

plotobs_id_index,plotobs_id_index,

SALVIAS[Veg+],Veg+,Comments

PlotObsID,individualID,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."

PlotID,locationID,

PlotCode,plotName,

census_no,censusNumber,"Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not."

census_date,eventDate,"This is for the subplot, not the organism, as all organisms in a subplot have the same value for it. The following query returns no rows:

-----

SELECT ""PlotID"", ""Line"", count(DISTINCT census_date) AS census_date_count

FROM ""SALVIAS"".organisms

WHERE ""Line"" IS NOT NULL AND census_date IS NOT NULL

GROUP BY ""PlotID"", ""Line""

HAVING count(DISTINCT census_date) > 1

-----"

OrigRecordID,OrigRecordID,

Line,subplot,

Ind,recordNumber,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."

ind_id,ind_id,Brad: OMIT

tag1,tag,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."

tag2,previousTag,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."

x_position,organismX,"Brad: These are important, fundamental values of many tree plots"

y_position,organismY,Brad: See comment above for x_position

dist,dist,

perp_dist,perp_dist,

SourceVoucher,catalogNumber/_alt/2,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."

coll_number,catalogNumber/_alt/1,Brad: Map instead as for voucher_string

collector_code,collector_code,Brad: OMIT

coll_inits,coll_inits,

coll_lastname,recordedBy.surName,"Brad: This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick."

coll_firstname,recordedBy.givenName,Brad: See comment above

DetType,voucherType,"Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."

det_by,det_by,

fam_status,fam_status,Brad: OMIT. This will be determined later by using TNRS.

gen_status,gen_status,Brad: OMIT. This will be determined later by using TNRS.

name_status,name_status,"Brad: OMIT. Except, note that if species_status=3, this indicate that name is a morphospecies and not a standard latin name. Not exactly sure how to use this in BIEN, but could be useful during the name-scrubbing process with TNRS."

SpAuthStatus,SpAuthStatus,

Family,family,

Genus,genus,

GenAuth,GenAuth,

Species,specificEpithet,

auth,scientificNameAuthorship,Brad: This is the author of the scientificName.

infra_rank_1,taxonRank,

infra_ep_1,infraspecificEpithet,

infra_auth_1,infra_auth_1,

common_name,common_name,

morphoname,morphoname,

species_code,species_code,

Habit,verbatimGrowthForm,"Brad: This is growth form (tree, shrub, herb, etc.). It is an observation of a trait."

height_class,height_class,

height_m,height,

height_m_commercial,height_m_commercial,

ht_first_branch_m,heightFirstBranch,

NoInd,individualCount,"Brad: This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."

cover_percent,coverPercent,

intercept_cm,volumeCanopy,"Brad: This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance."

cfaff,identificationQualifier,"Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."

other_annotations,other_annotations,

morphocf,morphocf,

IsMorpho,IsMorpho,

OrigFamily,verbatimFamily,Brad: OMIT

OrigGenus,verbatimGenus,

OrigSpecies,verbatimSpecificEpithet,Brad: OMIT

OrigAuth,OrigAuth,

phenology,phenology,

canopy_position,canopyPosition,

canopy_form,canopyForm,

liana_infestation,lianaInfestation,

Notes,fieldNotes,

temp_dbh,diameterBreastHeight,

temp_liandbh,temp_liandbh,

tmp_del,tmp_del,

PlotID_index,PlotID_index,

U[Veg+],Veg+,Comments

ID,occurrenceID,

Barcode,catalogNumber,

Collector,Collector/_merge/1,

Prefix,Prefix,Not used

Number,recordNumber,

Suffix,Suffix,Not used

Addcoll,Collector/_merge/2,

Colldd,dayCollected,

Collmm,monthCollected,

Collyy,yearCollected,

DateInfo,DateInfo,Not used

Family,family,

Genus,genus,

cf,identificationQualifier,

Detby,identifiedBy,

Detyy,yearIdentified,

Gazetteer,"VerbatimLocality/_merge/1/_label[label=""gazetteer""]/value/_merge/1",

Newgazett,"VerbatimLocality/_merge/1/_label[label=""gazetteer""]/value/_merge/2",Only used in 1 row

Majorarea,Majorarea,

Country,country,

Locnotes,VerbatimLocality/_merge/2,

Coorsyst,Coorsyst,

Lat,decimalLatitude,

NS,NS,

Long,decimalLongitude,

EW,EW,

Alt,Alt,What is this?

Alt2,Alt2,What is this?

Ecology,habitat,

Phenology,ReproductiveCondition,

Notes,fieldNotes,

ARIZ[Veg+],Veg+,Comments

GlobalUniqueIdentifier,occurrenceID,

DateLastModified,dcterms:modified,

BasisOfRecord,BasisOfRecord,

InstitutionCode,institutionCode,

CollectionCode,collectionCode,

CatalogNumber,CatalogNumber/_alt/2,Don't overwrite CatalogNumberNumeric

CatalogNumberNumeric,CatalogNumber/_alt/1,

Collector,recordedBy,

CollectorNumber,recordNumber,

FieldNumber,OMIT,"Usage inconsistent with DwC definition: meaning is recordNumber. Identical to CollectorNumber [1], so does not need to be mapped.

[1] The following query returns no rows: SELECT * FROM ""ARIZ"".""Specimen"" WHERE ""CollectorNumber"" IS DISTINCT FROM ""FieldNumber"""

YearCollected,yearCollected,

MonthCollected,monthCollected,

DayCollected,dayCollected,

TimeCollected,eventTime,

VerbatimCollectingDate,dateCollected/_alt/0,

FieldNotes,fieldNotes,

JulianDay,day,

HigherGeography,HigherGeography,

ContinentOcean,continent,

IslandGroup,IslandGroup,

Island,Island,

Country,country,

StateProvince,stateProvince,

County,county,

Locality,locality,

DecimalLatitude,decimalLatitude,

DecimalLongitude,decimalLongitude,

HorizontalDatum,HorizontalDatum,Not used

OriginalCoordinateSystem,verbatimSRS,

VerbatimLatitude,verbatimLatitude,

VerbatimLongitude,verbatimLongitude,

GeorefMethod,georeferenceProtocol,

CoordinateUncertaintyInMeters,coordinateUncertaintyInMeters,

LatLongComments,georeferenceRemarks,

BoundingBox,footprintWKT,

MinimumElevationInMeters,minimumElevationInMeters,

MaximumElevationInMeters,maximumElevationInMeters,

VerbatimElevation,verbatimElevation,

MinimumDepthInMeters,minimumDepthInMeters,

MaximumDepthInMeters,maximumDepthInMeters,

VerbatimDepth,VerbatimDepth,

ScientificName,ScientificName/_alt/2,

Kingdom,kingdom,

Phylum,phylum,

Class,class,

Order,order,

Family,family,

Genus,genus,

Species,specificEpithet,

Subspecies,infraspecificEpithet,

ScientificNameAuthor,ScientificName/_alt/1,Contains the binomial in addition to the authority

IdentifiedBy,identifiedBy,

IdentificationModifier,identificationQualifier,

YearIdentified,yearIdentified,

MonthIdentified,monthIdentified,

DayIdentified,dayIdentified,

TypeStatus,TypeStatus,

Sex,sex,

Preparations,Preparations,

Tissues,Tissues,Not used

IndividualCount,individualCount,

AgeClass,lifeStage,

GenBankNum,"associatedSequences/_label[label=""GenBank""]/value",

OtherCatalogNumbers,RelatedCatalogItem/_alt/1,

RelatedCatalogedItems,RelatedCatalogItem/_alt/2,Used only when OtherCatalogNumbers is NULL

Remarks,taxonRemarks,

GBIF[Veg+],Veg+,Comments

0,0,

1,1,

Collector,recordedBy,

3,3,

LatestDateCollected,dateCollected,

InstitutionCD,institutionCode,

CollectionCD,collectionCode,

CatalogNO,catalogNumber,

LastDateModified,dcterms:modified,

IdentifiedBy,identifiedBy,

ScientificNameOriginal,verbatimScientificName,

AuthorOfScientificName,scientificNameAuthorship,

ScientificName,scientificName,

GBIFFamilyOriginal,verbatimFamily,

Family,family,

GBIFGenusOriginal,verbatimGenus,

Genus,genus,

Country,country,

Locality,locality,

County,county,

StateProvince,stateProvince,

DecimalLatitude,decimalLatitude,

VerbatimLatitude,verbatimLatitude,

DecimalLongitude,decimalLongitude,

VerbatimLongitude,verbatimLongitude,

25,25,

MinimumElevationInMeter,minimumElevationInMeters,

MaximumElevationInMeter,maximumElevationInMeters,

SpecificEpithet,specificEpithet,

InfraspecificEpithet,infraspecificEpithet,

NCU-NCSC[Veg+],Veg+,Comments

Accession Number,occurrenceID,

SeriesName,collectionCode,

Barcode,catalogNumber,

Full Taxon Name,scientificName,

Collect Date,dateCollected,

Country,country,

State,stateProvince,

County,county,

Cultivated?,cultivated,

Elevation,verbatimElevation,

Lat (-=S),"Latitude/_replace:[""\?$""=]/value",

Long (-=W),"Longitude/_replace:[""\?$""=]/value",

Accuracy,coordinateUncertaintyInMeters,

FIPS,FIPS,FIPS county code

Alt N/S,Alt N/S,

Alt E/W,Alt E/W,

Format,preparations,

Typology,typeStatus,

,,

SpeciesLink[Veg+],Veg+,Comments

dwc_dwcore_GlobalUniqueIdentifier,occurrenceID,

dwc_dwcore_DateLastModified,dcterms:modified,

dwc_dwcore_BasisOfRecord,BasisOfRecord,

dwc_dwcore_InstitutionCode,institutionCode,

dwc_dwcore_CollectionCode,collectionCode,

dwc_dwcore_CatalogNumber,catalogNumber,

dwc_dwcore_Remarks,taxonRemarks,

dwc_dwcore_ScientificName,scientificName,

dwc_dwcore_Kingdom,kingdom,

dwc_dwcore_Phylum,phylum,

dwc_dwcore_Class,class,

dwc_dwcore_Order,order,

dwc_dwcore_Family,family,

dwc_dwcore_Genus,genus,

dwc_dwcore_SpecificEpithet,specificEpithet,

dwc_dwcore_InfraspecificEpithet,infraspecificEpithet,

dwc_dwcore_AuthorYearOfScientificName,ScientificNameAuthor/_alt/3,

dwc_dwcore_Continent,continent,

dwc_dwcore_Country,country,

dwc_dwcore_StateProvince,stateProvince,

dwc_dwcore_County,county,

dwc_dwcore_Locality,locality,

dwc_dwcore_MinimumElevationInMeters,minimumElevationInMeters,

dwc_dwcore_MaximumElevationInMeters,maximumElevationInMeters,

dwc_dwcore_MinimumDepthInMeters,minimumDepthInMeters,

dwc_dwcore_MaximumDepthInMeters,maximumDepthInMeters,

dwc_dwcore_DayOfYear,JulianDay/_alt/2,

dwc_dwcore_Collector,recordedBy,

dwc_dwcore_Sex,sex,

dwc_curatorial_IdentifiedBy,identifiedBy,

dwc_curatorial_CollectorNumber,recordNumber/_alt/3,

dwc_curatorial_FieldNumber,recordNumber/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)

-----

SELECT count(*) FROM ""SpeciesLink"".specimens

WHERE COALESCE(""dwc_curatorial_FieldNumber"", ""dwc_terms_fieldNumber"", ""conceptual_darwin_2003_1_0_FieldNumber"") != ""dwc_terms_recordNumber""

-----"

dwc_curatorial_TypeStatus,TypeStatus,

dwc_curatorial_IndividualCount,individualCount,

dwc_geospatial_DecimalLatitude,decimalLatitude,

dwc_geospatial_DecimalLongitude,decimalLongitude,

dwc_geospatial_VerbatimLatitude,verbatimLatitude,

dwc_geospatial_VerbatimLongitude,verbatimLongitude,

http__purl_org_dc_terms_modified,dcterms:modified,

dwc_terms_collectionID,collectionID,

dwc_terms_institutionCode,institutionCode,

dwc_terms_collectionCode,collectionCode,

dwc_terms_basisOfRecord,basisOfRecord,

dwc_terms_identifiedBy,identifiedBy,

dwc_terms_dateIdentified,dateIdentified,

dwc_terms_typeStatus,typeStatus,

dwc_terms_catalogNumber,catalogNumber,

dwc_terms_occurrenceRemarks,occurrenceRemarks,

dwc_terms_recordNumber,recordNumber/_alt/1,

dwc_terms_recordedBy,recordedBy,

dwc_terms_individualCount,individualCount,

dwc_terms_sex,sex,

dwc_terms_preparations,preparations,

dwc_terms_otherCatalogNumbers,otherCatalogNumbers,

dwc_terms_eventTime,eventTime,

dwc_terms_startDayOfYear,startDayOfYear,

dwc_terms_endDayOfYear,endDayOfYear,

dwc_terms_year,year,

dwc_terms_month,month,

dwc_terms_day,day,

dwc_terms_fieldNumber,recordNumber/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)

-----

SELECT count(*) FROM ""SpeciesLink"".specimens

WHERE COALESCE(""dwc_curatorial_FieldNumber"", ""dwc_terms_fieldNumber"", ""conceptual_darwin_2003_1_0_FieldNumber"") != ""dwc_terms_recordNumber""

-----"

dwc_terms_continent,continent,

dwc_terms_country,country,

dwc_terms_stateProvince,stateProvince,

dwc_terms_county,county,

dwc_terms_locality,locality,

dwc_terms_minimumElevationInMeters,minimumElevationInMeters,

dwc_terms_maximumElevationInMeters,maximumElevationInMeters,

dwc_terms_minimumDepthInMeters,minimumDepthInMeters,

dwc_terms_maximumDepthInMeters,maximumDepthInMeters,

dwc_terms_verbatimLatitude,verbatimLatitude,

dwc_terms_verbatimLongitude,verbatimLongitude,

dwc_terms_decimalLatitude,decimalLatitude,

dwc_terms_decimalLongitude,decimalLongitude,

dwc_terms_coordinateUncertaintyInMeters,coordinateUncertaintyInMeters,

dwc_terms_scientificName,scientificName,

dwc_terms_kingdom,kingdom,

dwc_terms_phylum,phylum,

dwc_terms_class,class,

dwc_terms_order,order,

dwc_terms_family,family,

dwc_terms_genus,genus,

dwc_terms_specificEpithet,specificEpithet,

dwc_terms_infraspecificEpithet,infraspecificEpithet,

dwc_terms_scientificNameAuthorship,ScientificNameAuthor/_alt/1,

conceptual_darwin_2003_1_0_DateLastModified,dcterms:modified,

conceptual_darwin_2003_1_0_InstitutionCode,institutionCode,

conceptual_darwin_2003_1_0_CollectionCode,collectionCode,

conceptual_darwin_2003_1_0_CatalogNumber,catalogNumber,

conceptual_darwin_2003_1_0_ScientificName,scientificName,

conceptual_darwin_2003_1_0_BasisOfRecord,BasisOfRecord,

conceptual_darwin_2003_1_0_Kingdom,kingdom,

conceptual_darwin_2003_1_0_Phylum,phylum,

conceptual_darwin_2003_1_0_Class,class,

conceptual_darwin_2003_1_0_Order,order,

conceptual_darwin_2003_1_0_Family,family,

conceptual_darwin_2003_1_0_Genus,genus,

conceptual_darwin_2003_1_0_Species,specificEpithet,

conceptual_darwin_2003_1_0_Subspecies,infraspecificEpithet,

conceptual_darwin_2003_1_0_ScientificNameAuthor,ScientificNameAuthor/_alt/2,

conceptual_darwin_2003_1_0_IdentifiedBy,identifiedBy,

conceptual_darwin_2003_1_0_YearIdentified,yearIdentified,

conceptual_darwin_2003_1_0_MonthIdentified,monthIdentified,

conceptual_darwin_2003_1_0_DayIdentified,dayIdentified,

conceptual_darwin_2003_1_0_TypeStatus,TypeStatus,

conceptual_darwin_2003_1_0_CollectorNumber,recordNumber/_alt/3,

conceptual_darwin_2003_1_0_FieldNumber,recordNumber/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)

-----

SELECT count(*) FROM ""SpeciesLink"".specimens

WHERE COALESCE(""dwc_curatorial_FieldNumber"", ""dwc_terms_fieldNumber"", ""conceptual_darwin_2003_1_0_FieldNumber"") != ""dwc_terms_recordNumber""

-----"

conceptual_darwin_2003_1_0_Collector,recordedBy,

conceptual_darwin_2003_1_0_YearCollected,yearCollected,

conceptual_darwin_2003_1_0_MonthCollected,monthCollected,

conceptual_darwin_2003_1_0_DayCollected,dayCollected,

conceptual_darwin_2003_1_0_JulianDay,JulianDay/_alt/1,

conceptual_darwin_2003_1_0_TimeOfDay,eventTime,

conceptual_darwin_2003_1_0_ContinentOcean,continent,

conceptual_darwin_2003_1_0_Country,country,

conceptual_darwin_2003_1_0_StateProvince,stateProvince,

conceptual_darwin_2003_1_0_County,county,

conceptual_darwin_2003_1_0_Locality,locality,

conceptual_darwin_2003_1_0_Longitude,verbatimLongitude,

conceptual_darwin_2003_1_0_Latitude,verbatimLatitude,

conceptual_darwin_2003_1_0_CoordinatePrecision,coordinatePrecision,

conceptual_darwin_2003_1_0_BoundingBox,footprintWKT,

conceptual_darwin_2003_1_0_MinimumElevation,minimumElevationInMeters,

conceptual_darwin_2003_1_0_MaximumElevation,maximumElevationInMeters,

conceptual_darwin_2003_1_0_MinimumDepth,minimumDepthInMeters,

conceptual_darwin_2003_1_0_MaximumDepth,maximumDepthInMeters,

conceptual_darwin_2003_1_0_Sex,sex,

conceptual_darwin_2003_1_0_PreparationType,preparations,

conceptual_darwin_2003_1_0_IndividualCount,individualCount,

conceptual_darwin_2003_1_0_PreviousCatalogNumber,otherCatalogNumbers,

conceptual_darwin_2003_1_0_RelationshipType,relationshipOfResource,

conceptual_darwin_2003_1_0_RelatedCatalogItem,relatedResourceID,

conceptual_darwin_2003_1_0_Notes,fieldNotes,

MO[Veg+],Veg+,Comments

CatalogNumber,catalogNumber,

DateLastModified,dcterms:modified,

InstitutionCode,institutionCode,

CollectionCode,collectionCode,

ScientificName,scientificName,

BasisOfRecord,BasisOfRecord,

Kingdom,kingdom,

family,family,

genus,genus,

species,specificEpithet,

Subspecies,infraspecificEpithet,

ScientificNameAuthor,scientificNameAuthorship,

IdentifiedBy,identifiedBy,

TypeStatus,TypeStatus,

CollectorNumber,recordNumber,

Collector,recordedBy,

DayCollected,dayCollected,

MonthCollected,monthCollected,

YearCollected,yearCollected,

ContinentOcean,continent,

Country,country,

StateProvince,stateProvince,

County,county,

Locality,locality,

longitude,verbatimLongitude,

latitude,verbatimLatitude,

MinimumElevation,minimumElevationInMeters,

MaximumElevation,maximumElevationInMeters,

IndividualCount,individualCount,

notes,fieldNotes,

convertednotes,fieldNotes,

VegBank[Veg+],Veg+,Comments

plantconcept_id,plantconcept_id,

taxonobservation_id,taxonOccurrenceID,

observation_id,eventID,

authorplantname,verbatimScientificName,

taxonobservation_reference_id,taxonobservation_reference_id,

taxoninferencearea,taxoninferencearea,

emb_taxonobservation,emb_taxonobservation,

int_origplantconcept_id,int_origplantconcept_id,

int_origplantscifull,int_origplantscifull,

int_origplantscinamenoauth,int_origplantscinamenoauth,

int_origplantcommon,int_origplantcommon,

int_origplantcode,int_origplantcode,

int_currplantconcept_id,int_currplantconcept_id,

int_currplantscifull,int_currplantscifull,

int_currplantscinamenoauth,int_currplantscinamenoauth,

int_currplantcommon,int_currplantcommon,

int_currplantcode,int_currplantcode,

taxonobservation_accessioncode,taxonobservation_accessioncode,

taxoninterpretation_id,taxoninterpretation_id,

stemlocation_id,stemlocation_id,

taxoninterpretation_plantname_id,taxoninterpretation_plantname_id,

party_id,party_id,

role_id,role_id,

interpretationtype,interpretationtype,

reference_id,reference_id,

originalinterpretation,originalinterpretation,

currentinterpretation,currentinterpretation,

taxonfit,identificationQualifier,

taxonconfidence,taxonconfidence,

collector_id,collector_id,

collectionnumber,collectionnumber,

museum_id,museum_id,

museumaccessionnumber,catalogNumber,

grouptype,grouptype,

notes,fieldNotes,

notespublic,notespublic,

notesmgt,notesmgt,

revisions,revisions,

interpretationdate,dateIdentified,

collectiondate,dateCollected,

emb_taxoninterpretation,emb_taxoninterpretation,

taxoninterpretation_accessioncode,taxoninterpretation_accessioncode,

plantname_id,plantname_id,

plantconcept_reference_id,plantconcept_reference_id,

plantname,plantname,

plantcode,plantcode,

plantdescription,plantdescription,

d_obscount,d_obscount,

d_currentaccepted,d_currentaccepted,

plantconcept_accessioncode,plantconcept_accessioncode,

Kingdom,kingdom,

Subkingdom,Subkingdom,

Superdivision,Superdivision,

Division,Division,

Subdivision,Subdivision,

Class,class,

Subclass,Subclass,

Order,order,

Family,family,

Genus,genus,

Species,specificEpithet,

Subspecies,infraspecificEpithet,

Variety,Variety,

Forma,Forma,

row_num,row_num,

VegBank[Veg+],Veg+,Comments

observation_id,eventID,

previousobs_id,previousobs_id,

plot_id,locationID,

project_id,projectID,

authorobscode,fieldNumber,

dateaccuracy,dateaccuracy,

covermethod_id,covermethod_id,

coverdispersion,coverdispersion,

autotaxoncover,autotaxoncover,

stratummethod_id,stratummethod_id,

methodnarrative,samplingProtocol,

taxonobservationarea,taxonobservationarea,

stemsizelimit,stemsizelimit,

stemobservationarea,stemobservationarea,

stemsamplemethod,stemsamplemethod,

originaldata,originaldata,

effortlevel,effortlevel,

plotvalidationlevel,plotvalidationlevel,

floristicquality,floristicquality,

bryophytequality,bryophytequality,

lichenquality,lichenquality,

observationnarrative,observationnarrative,

landscapenarrative,landscapenarrative,

homogeneity,homogeneity,

phenologicaspect,phenologicaspect,

representativeness,representativeness,

standmaturity,standmaturity,

successionalstatus,successionalstatus,

basalarea,basalarea,

hydrologicregime,hydrologicregime,

soilmoistureregime,soilmoistureregime,

soildrainage,soildrainage,

watersalinity,watersalinity,

waterdepth,waterdepth,

shoredistance,shoredistance,

soildepth,soildepth,

organicdepth,organicdepth,

soiltaxon_id,soiltaxon_id,

soiltaxonsrc,soiltaxonsrc,

percentbedrock,percentbedrock,

percentrockgravel,percentrockgravel,

percentwood,percentwood,

percentlitter,percentlitter,

percentbaresoil,percentbaresoil,

percentwater,percentwater,

percentother,percentother,

nameother,nameother,

treeht,treeht,

shrubht,shrubht,

fieldht,fieldht,

nonvascularht,nonvascularht,

submergedht,submergedht,

treecover,treecover,

shrubcover,shrubcover,

fieldcover,fieldcover,

nonvascularcover,nonvascularcover,

floatingcover,floatingcover,

submergedcover,submergedcover,

dominantstratum,dominantstratum,

growthform1type,growthform1type,

growthform2type,growthform2type,

growthform3type,growthform3type,

growthform1cover,growthform1cover,

growthform2cover,growthform2cover,

growthform3cover,growthform3cover,

totalcover,totalcover,

notespublic,notespublic,

notesmgt,notesmgt,

revisions,revisions,

obsstartdate,startDate,

obsenddate,endDate,

dateentered,dateentered,

emb_observation,emb_observation,

interp_orig_ci_id,interp_orig_ci_id,

interp_orig_cc_id,interp_orig_cc_id,

interp_orig_sciname,interp_orig_sciname,

interp_orig_code,interp_orig_code,

interp_orig_party_id,interp_orig_party_id,

interp_orig_partyname,interp_orig_partyname,

interp_current_ci_id,interp_current_ci_id,

interp_current_cc_id,interp_current_cc_id,

interp_current_sciname,interp_current_sciname,

interp_current_code,interp_current_code,

interp_current_party_id,interp_current_party_id,

interp_current_partyname,interp_current_partyname,

interp_bestfit_ci_id,interp_bestfit_ci_id,

interp_bestfit_cc_id,interp_bestfit_cc_id,

interp_bestfit_sciname,interp_bestfit_sciname,

interp_bestfit_code,interp_bestfit_code,

interp_bestfit_party_id,interp_bestfit_party_id,

interp_bestfit_partyname,interp_bestfit_partyname,

toptaxon1name,toptaxon1name,

toptaxon2name,toptaxon2name,

toptaxon3name,toptaxon3name,

toptaxon4name,toptaxon4name,

toptaxon5name,toptaxon5name,

numberoftaxa,numberoftaxa,

accessioncode,accessioncode,

soilobs_id,soilobs_id,

soilhorizon,soilhorizon,

soildepthtop,soildepthtop,

soildepthbottom,soildepthbottom,

soilcolor,soilcolor,

soilorganic,organic,

soiltexture,texture,

soilsand,sand,

soilsilt,silt,

soilclay,clay,

soilcoarse,soilcoarse,

soilph,ph,

exchangecapacity,cationExchangeCapacity,

basesaturation,baseSaturation,

soildescription,soildescription,

emb_soilobs,emb_soilobs,

row_num,row_num,

VegBank[Veg+],Veg+,Comments

plot_id,locationID,

authorplotcode,plotName,

reference_id,reference_id,

parent_id,parentPlotID,

reallatitude,OMIT,

reallongitude,OMIT,

locationaccuracy,coordinateUncertaintyInMeters,

confidentialitystatus,confidentialitystatus,

confidentialityreason,confidentialityreason,

latitude,verbatimLatitude,

longitude,verbatimLongitude,

authore,authore,

authorn,authorn,

authorzone,authorzone,

authordatum,authordatum,

authorlocation,authorlocation,

locationnarrative,locality,

azimuth,azimuth,

dsgpoly,dsgpoly,

shape,footprintWKT,

area,plotArea,

standsize,standsize,

placementmethod,placementmethod,

permanence,permanence,

layoutnarrative,layoutnarrative,

elevation,verbatimElevation,

elevationaccuracy,elevationaccuracy,

elevationrange,elevationrange,

slopeaspect,slopeAspect,

minslopeaspect,minSlopeAspect,

maxslopeaspect,maxSlopeAspect,

slopegradient,slopeGradient,

minslopegradient,minSlopeGradient,

maxslopegradient,maxSlopeGradient,

topoposition,topoposition,

landform,landform,

surficialdeposits,surficialdeposits,

rocktype,rocktype,

stateprovince,stateProvince,

country,country,

submitter_surname,submitter_surname,

submitter_givenname,submitter_givenname,