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Revision 4663

Added by Aaron Marcuse-Kubitza over 12 years ago

input.Makefile: Maps validation: $(newTerms): Fixed bug where header needed to be removed before running filter_out_ci because filter_out_ci only removes the header if it matches the vocabulary's header. Removing the header afterward can cause the first row to be removed instead if the header was already removed.

inputs/XAL/Specimen/unmapped_terms.csv
	1	dcterms:modified
1	2	BasisOfRecord
2	3	TypeStatus
3	4	day

inputs/TEAM/VL/new_terms.csv
2	2	1haPlotCode
3	3	ObservationDate
4	4	Collectors
5		max_diam
6	5	Method
7	6	X_1haPlot
8	7	Y_1haPlot

inputs/TEAM/VL/unmapped_terms.csv
	1	max_diam
1	2	max_diam_pom
2	3	ConditionCodes
3	4	LocationCodes

inputs/TEAM/VT/new_terms.csv
1	1	ObservationDate
2	2	Collectors
3		dbh_pom
4	3	Method
5	4	X_1haPlot
6	5	Y_1haPlot

inputs/TEAM/VT/unmapped_terms.csv
	1	dbh_pom
1	2	dbh_new
2	3	dbh_new_pom
3	4	ConditionCodes

inputs/NY/Specimen/new_terms.csv
1		key
2	1	PlantFungusDescription
3	2	Substrate
4	3	Vegetation

inputs/ARIZ/Specimen/unmapped_terms.csv
	1	dcterms:modified
1	2	BasisOfRecord
2	3	OMIT
3	4	eventTime

inputs/NCU-NCSC/Specimen/new_terms.csv
6	6	Lat (-=S)
7	7	Long (-=W)
8	8	Accuracy
9		FIPS
10	9	Format
11	10	Typology

     ##### Maps validation
     # `tail -n +2`: Remove header before running filter_out_ci because filter_out_ci
     # only removes the header if it matches the vocabulary's header.
     define newTerms
     $(bin)/filter_out_ci <$< $(1) $(word 2,$+)|$(bin)/cols $(1)$(2)|tail -n +2 >$@
     tail -n +2 $<|$(bin)/filter_out_ci $(1) $(word 2,$+)|$(bin)/cols $(1)$(2) >$@
     $(bin)/autoremove $@
     endef

inputs/NY/Specimen/unmapped_terms.csv
	1	key
1	2	dcterms:modified
2	3	BasisOfRecord
3	4	TypeStatus

inputs/Madidi/Organism/new_terms.csv
1	1	Expedition
2	2	Inventory name
3		Number of inventory (general)
4	3	Inventory code
5	4	Tag number
6	5	Tree number

inputs/Madidi/Organism/unmapped_terms.csv
	1	Number of inventory (general)
1	2	Number of inventory (expedition)
2	3	"Type Inventory (C, PP, TP)"
3	4	Similar specimen

inputs/Madidi/Plot/new_terms.csv
1		Inventory number
2	1	Expedition number
3	2	Expedition name
4	3	Inventory name

inputs/Madidi/Plot/unmapped_terms.csv
	1	Inventory number
1	2	Number of inventory (expedition)
2	3	Installed and evaluated by
3	4	Collaborators

inputs/UNCC/Specimen/unmapped_terms.csv
1	1	reproductiveCondition
2	2	reproductiveCondition
3	3	reproductiveCondition
	4	reproductiveCondition
4	5	associatedMedia
5	6	filler

inputs/SALVIAS-CSV/Organism/new_terms.csv
3	3	census_no
4	4	census_date
5	5	individual_code
6		ind_id
7	6	tag1
8	7	tag2
9	8	x_position

inputs/SALVIAS-CSV/Organism/unmapped_terms.csv
	1	ind_id
1	2	collector_code
2	3	fam_status
3	4	gen_status

inputs/SALVIAS-CSV/Plot/new_terms.csv
29	29	soil_texture
30	30	holdridge_life_zone
31	31	life_zone_code
32		observation_type
33	32	plot_methodology
34	33	plot_area_ha
35	34	date_start

inputs/SALVIAS-CSV/Plot/unmapped_terms.csv
	1	observation_type
1	2	recensused

inputs/CVS/Organism/unmapped_terms.csv
1	1	OMIT
	2	OMIT
2	3	confidentialityStatus

inputs/REMIB/Specimen/new_terms.csv
1	1	acronym
2	2	accession_number
3	3	long_deg
4		long_min
5	4	lat_deg
6	5	coll_day
7	6	coll_month

inputs/REMIB/Specimen/unmapped_terms.csv
	1	long_min
1	2	long_sec
2	3	lat_min
3	4	lat_sec

inputs/CTFS/StemObservation/new_terms.csv
1		FamilyID
2	1	MeasureID
3	2	x
4	3	y

inputs/CTFS/StemObservation/unmapped_terms.csv
	1	FamilyID
1	2	GenusID
2	3	SpeciesID
3	4	SubSpeciesID

inputs/CTFS/Subplot/unmapped_terms.csv
	1	OMIT
1	2	DimX
2	3	DimY

inputs/CTFS/TaxonOccurrence/unmapped_terms.csv
	1	FamilyID
1	2	GenusID
2	3	SpeciesID
3	4	SubSpeciesID

inputs/CTFS/Plot/unmapped_terms.csv
	1	CountryID
1	2	ReferenceX
2	3	ReferenceY
3	4	row_num

inputs/SALVIAS/plotMetadata/new_terms.csv
1		orig_filename
2	1	SiteCode
3	2	MajorGeo
4	3	PolDiv1

inputs/SALVIAS/projects/unmapped_terms.csv
	1	project_pi
1	2	allow_download_all
2	3	ipr_specific
3	4	ipr_specific_updated

inputs/SALVIAS/stems/unmapped_terms.csv
	1	origrecord_id_stems
1	2	tmp_del
2	3	plotobs_id_index

inputs/SALVIAS/plotObservations/unmapped_terms.csv
	1	OrigRecordID
1	2	ind_id
2	3	dist
3	4	perp_dist

inputs/U/Specimen/unmapped_terms.csv
	1	Prefix
1	2	Suffix
2	3	DateInfo
3	4	Majorarea

inputs/GBIF/Specimen/unmapped_terms.csv
	1	0
1	2	1
2	3	3
3	4	dcterms:modified

inputs/SpeciesLink/Specimen/unmapped_terms.csv
	1	dcterms:modified
1	2	BasisOfRecord
2	3	day
3	4	TypeStatus

inputs/VegBank/taxonobservation_/unmapped_terms.csv
	1	plantconcept_id
1	2	taxonobservation_reference_id
2	3	taxoninferencearea
3	4	emb_taxonobservation

inputs/VegBank/plot_/unmapped_terms.csv
	1	reference_id
1	2	parentPlotID
2	3	OMIT
3	4	OMIT

inputs/VegBank/observation_/unmapped_terms.csv
	1	previousobs_id
1	2	dateaccuracy
2	3	covermethod_id
3	4	coverdispersion

inputs/VegBank/observation_/new_terms.csv
1	1	observation_id
2		previousobs_id
3	2	methodnarrative
4	3	obsstartdate
5	4	obsenddate

inputs/FIA/Organism/new_terms.csv
3	3	MeasMon
4	4	MeasDay
5	5	PlotCD
6		HOM

inputs/SALVIAS/plotMetadata/unmapped_terms.csv
	1	orig_filename
1	2	AccessCode
2	3	PrimOwnerID
3	4	SiteName

inputs/SALVIAS/stems/new_terms.csv
1		origrecord_id_stems
2	1	PlotObsID
3	2	NoInd
4	3	basal_diam

inputs/SALVIAS/plotObservations/new_terms.csv
2	2	PlotCode
3	3	census_no
4	4	census_date
5		OrigRecordID
6	5	Line
7	6	Ind
8	7	tag1

inputs/U/Specimen/new_terms.csv
1	1	Barcode
2		Prefix
3	2	Number
4	3	Addcoll
5	4	Colldd

inputs/GBIF/Specimen/new_terms.csv
1		0
2	1	LatestDateCollected
3	2	InstitutionCD
4	3	CollectionCD

inputs/NCU-NCSC/Specimen/unmapped_terms.csv
	1	FIPS
1	2	Alt N/S
2	3	Alt E/W
3	4	preparations

inputs/VegBank/taxonobservation_/new_terms.csv
1		plantconcept_id
2	1	taxonobservation_id
3	2	observation_id
4	3	authorplantname

inputs/VegBank/plot_/new_terms.csv
1	1	authorplotcode
2		reference_id
3	2	parent_id
4	3	reallatitude
5	4	reallongitude

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Revision 4663

Added by Aaron Marcuse-Kubitza over 12 years ago