##### Configuration

# Command line

log ?= $(if $(test),,1)

profile ?=

quiet ?=

reverify ?= 1

use_staged ?= $(by_col)

exts ?= csv tsv txt xml

test_n ?= 2

# Paths

# Make

SHELL := /bin/bash

selfMake = $(MAKE) --makefile=../input.Makefile

subMake = $(MAKE) $(@:$(root)/%=%) --directory=$(root)

+_ = $(+:_%=)

addBeforeExt = $(basename $(2))$(1)$(suffix $(2))

# OS

# System

# Terminal

termCols := $(shell tput cols)

esc := '['

# Commands

MKDIR = mkdir -p

CP = cp -p

diff = diff --unified=2

diffIgnoreSpace = $(diff) --ignore-space-change

diffVerbose = $(if $(verbose),diff --side-by-side --left-column\

# BIEN commands

sortFilenames = $(shell $(bin)/sort_filenames $(1))

selfMap = $(bin)/cols 0 0

psqlOpts := --set ON_ERROR_STOP=1 --quiet

psqlAsBien := $(bin)/psql_vegbien $(psqlOpts)

# Usage: ($(inDatasrc); cat $(file))|$(psqlCmd)

# SVN

setSvnIgnore = svn propset svn:ignore $(2) $(1)

define addDirWithIgnore

$(setSvnIgnore)

endef

##### Environment

##### General targets

all: _always maps ;

clean: _always

	$(RM) $(all)

remake: _always clean

make_script = ./$< >$@

%/: % _always ;

%: %.make

	$(if $(wildcard $@),,"time" $(make_script))

# Only remake if doesn't exist. This prevents unintentional remaking when the

.PRECIOUS: % # save partial outputs of aborted src make scripts

##### SVN

add: _always

	$(call setSvnIgnore,.,'*')

	$(call addDirWithIgnore,logs,$$'*.log.sql\n*.trace')

	$(call addDirWithIgnore,verify,'*.out')

	$(call addFile,import_order.txt)

# Adds a new table subdir

##### Existing maps discovery

sortFile := import_order.txt

tables := $(if $(wildcard $(sortFile)),$(shell cat $(sortFile)))

allSubdirs := $(call wildcard/,*/)

allTables := $(call sortFilenames,$(filter-out _% verify logs,$(allSubdirs:%/=%)))

joinedTables := $(filter-out $(tables),$(allTables))

ifeq ($(tables),)# none specified in sort file

endif

viaMap := %/map.csv

anyMap := $(viaMap) $(directMap) %/unmapped_terms.csv\

%/new_terms.csv

extsFilter := $(addprefix %.,$(exts))

anyTest = $*/test.%

srcsOnly = $(filter-out $(anyMap) $(anyTest) %/logs,$(call dataOnly,$(1)))

via := Veg+

coreMap := $(mappings)/VegCore-VegBIEN.csv

vocab := $(mappings)/$(via).vocab.csv

dict := $(mappings)/$(via)-VegCore.csv

viaMaps := $(wildcard $(tables:%=%/map.csv))

viaMaps += $(filter-out $(viaMaps),$(wildcard */map.csv))

autogenMaps := $(subst map.,VegBIEN.,$(viaMaps))

directMaps := $(autogenMaps) $(filter-out $(autogenMaps),\

$(wildcard */VegBIEN.csv))

##### Sources

srcs = $(call sortFilenames,$(call srcsOnly,$(wildcard $*/*)))

nonHeaderSrcs = $(filter-out %/header.csv,$(srcs))

isXml = $(filter %.xml,$(nonHeaderSrcs))

    # true if $(srcs) non-empty and contains no *.xml

catSrcs = $(bin)/cat$(if $(nonXml),_csv) $(srcs)

withCatSrcs = $(catSrcs:$(bin)/%=$(bin)/with_%) --

# Usage: `make {--silent|-s} inputs/<datasrc>/cat` (don't echo make commands)

cat: $(tables:%=%/cat) _always ;

%/cat: _always

	$(catSrcs)

##### Staging tables installation

dbExports := $(sort $(wildcard *.schema.sql))# schemas first

dbExports := $(strip $(dbExports))# += adds extra whitespace

allInstalls := $(if $(dbExports),sql) $(allTables)

install: _always schema $(allInstalls:%=%/install) ;

uninstall: _always rm_schema ;

schema: _always

	-echo 'CREATE SCHEMA "$(datasrc)";'|$(psqlAsBien)

rm_schema: _always

	echo 'DROP SCHEMA IF EXISTS "$(datasrc)" CASCADE;'|$(psqlAsBien)

logInstall = $(if $(log),$(if $(quiet),&>,2>&1|tee $(2)\

logInstall* = $(call logInstall,$*/)

logInstall*Add = $(call logInstall,$*/,-a)# append to log

# Must come before %/install to override it

sql/install: $(dbExports)

	($(inDatasrc); cat $+|grep -vF 'SET search_path')|"time" $(psqlAsBien) \

$(logInstall)

# The export must be created with:

# `--compatible=postgresql --add-locks=false --set-charset --no-create-info`

# Must come before `%.sql: _MySQL/%.sql` to override it

%.data.sql: _MySQL/%.data.sql

# The export must be created with:

cleanup = (prefix=; . $(bin)/vegbien_dest; env schema=$(datasrc) table=$*\

$(bin)/csv2db) $(logInstall*Add)

# For staging tables which are derived by joining together other staging tables.

%/install %/header.csv: %/create.sql _always

	($(inDatasrc); echo 'CREATE TABLE "$*" AS'; cat $<; echo ';')|"time" \

$(psqlAsBien) --echo-all --set=table='"$*"' $(logInstall*)

	-$(addRowNum)

	$(exportHeader)

# ignore errors if create.sql already added a primary key

addRowNum = echo 'ALTER TABLE "$(datasrc)"."$*"\

# The joined tables must be suffixed with ".src" to prevent the creation of a

%/install: _always

	$(if $(isRef),$(exportHeader),$(if $(nonXml),$(import_install_)))

import_install_ = (prefix=; . $(bin)/vegbien_dest; "time" nice -n +5\

env schema=$(datasrc) table=$* has_row_num=$(hasRowNum) $(bin)/csv2db\

$(catSrcs) $(logInstall*))

##### Maps building

# WARNING: You CANNOT make a subdir using `make inputs/<datasrc>/<subdir>/`.

# Maps to (try to) build are added to this

maps :=

srcRoot = $(mappings)/root.sh

mkSrcMap = $(catSrcs)|(. $(srcRoot); env datasrc=$(datasrc) $(bin)/src_map >$@)

# Via maps cleanup

ifneq ($(filter %/.map.csv.last_cleanup,$(MAKECMDGOALS)),)

%/.map.csv.last_cleanup: %/map.csv $(coreMap) $(dict)

	$(bin)/in_place $< $(bin)/canon 1 $(coreMap)

	$(bin)/in_place $< $(bin)/translate 1 $(dict)

	touch $@

	+$(selfMake) $(<:%/map.csv=%/unmapped_terms.csv)

# Include comment column so commented mappings are never removed

%/map.csv: _always

	+$(selfMake) $(@:%/map.csv=%/.map.csv.last_cleanup)

endif

%/VegBIEN.csv: %/map.csv $(coreMap)

	<$< $(bin)/cat_cols 1 2|$(bin)/join $(coreMap)|$(bin)/sort_map >$@

maps += $(autogenMaps)

maps: $(maps) _always ;

##### Maps validation

# `tail -n +2`: Remove header before running filter_out_ci because filter_out_ci

define newTerms

tail -n +2 $<|$(bin)/cols $(1)$(2) >$@

$(bin)/autoremove $@

%/unmapped_terms.csv: %/map.csv $(coreMap)

	$(call newTerms,1,|$(bin)/filter_out_ci 0 $(coreMap))

%/new_terms.csv: %/map.csv $(coreMap) $(dict) %/unmapped_terms.csv

	$(call newTerms,0,$(rmNewTerms))

rmNewTerms = |$(bin)/filter_out_ci 0 $(coreMap)|$(bin)/filter_out_ci 0 $(dict)\

termsSubdirs := $(tables)

include $(root)/lib/mappings.Makefile

##### External dependencies

.PRECIOUS: $(root)/% # let ext. dir's Makefile decide whether to delete on error

##### Mapping

+maps = $(filter %/map.csv %/VegBIEN.csv $(mappings)/%,$(+_))

map = $(if $(srcs),$(withCatSrcs) $(root)/map $(+maps),\

$(shell echo Warning: No input file $*/*.{$(exts)} >&2)false)

# need false to run some command, when prefixed by `env ...` below

map2db = $(if $(use_staged),env in_database=vegbien in_schema=$(datasrc)\

##### Import to VegBIEN

profileTest = $(if $(profile),$(if $(test),1))

log_ = $*/logs/$(if $(n),n=$(n).,)$(date).log.sql

trace = $(log_:.log.sql=.trace)

import = -$(if $(profileTest),$(profileOnly),(set -x; "time" env commit=1\

$(if $(profile),profile_to=$(trace)) $(map2db)) $(if $(log),\

$(if $(n),,&>$(log_)))$(if $(log),$(if $(n), 2>&1|tee -a $(log_))))

# don't abort on import errors, which often relate to invalid input data

import: $(tables:%=%/import) _always ;

%/import: %/VegBIEN.csv _always

	$(import)

# default:

%/import: _always ;

##### Log files from import

logs := $(wildcard */logs/*.log.sql */logs/*.trace)

rm_logs: _always

	$(RM) $(logs)

##### Verification of import

verify: $(tables:%=%/verify) _always ;

%/verify: verify/%.ref verify/%.out _always

	-$(diffVerbose) $(+_)

# don't abort on verification errors, which are expected during development

# default:

%/verify: verify/%.out _always

	$(if $(shell test -e $< && echo t),cat $<)

# don't run if verify/%.out's default do-nothing action was used

# can't use $(wildcard) because it won't recheck file after verify/%.out is run

psqlExport := "time" $(psqlAsBien) --no-align --field-separator=$$'\t'\

verify/%.out: $(mappings)/verify.%.sql _always

	$(verify)

# default:

verify/%.out: _always ;

all += $(wildcard verify/*.out)

%.ref: %.ref.sql

	($(inDatasrc); cat $<)|$(psqlExport) >$@

##### Editing import

rotate: _always

	echo "UPDATE party SET organizationname = organizationname||'.$(date)'\

WHERE organizationname = '$(datasrc)';"|$(psqlAsBien)

rm: _always

	echo "DELETE FROM party WHERE organizationname = '$(datasrc)';"|\

##### Testing

testRefOutput = $(subst .by_col,,$(1))

testRef = $(testRefOutput).ref

# `rm $@`: Remove outputs of successful tests to reduce clutter

# `$(foreach use_staged...)`: Run with use_staged=1

define runTest

@echo "Testing $(abspath $@)..."

>$@ env test=1 n=$(test_n) $(1) $(foreach use_staged,1,$(map2db))

@(set -x; $(diffIgnoreSpace) $(call testRef,$@) $@) 2>&1 && rm $@ || { e=$$?;\

$(if $(wildcard $(call testRef,$@)),,cat $@;)\

$(if $(hasOwnRef),\

{\

echo $(emph)"Note: The preceding failed test is compared to another test's\

exit $$e;}

endef

tests :=

# Requires staging tables. To create them, run `make inputs/<datasrc>/install`.

%/test.xml: %/VegBIEN.csv _always

	$(if $(nonXml),$(call runTest,by_col=))

tests += %/test.xml

%/test.by_col.xml: %/VegBIEN.csv _always

	-$(if $(nonXml),$(call runTest,by_col=1))

# Don't abort tester if only by-column test fails

tests += %/test.by_col.xml

endif

testOutputs := $(foreach test,$(tests),$(tables:%=$(test)))

.PRECIOUS: $(testOutputs) # save outputs of failed tests so they can be accepted

test: _always $(testOutputs) ;

all += $(wildcard %/test*.xml)

# Accepts a test output: make <test_output_path>-ok

%-ok: _always

	mv $* $(call testRef,$*)

accept-all: _always

	+yes|$(selfMake) test

##### Documentation

steps = $(selfMake) -s $*/import test=1 by_col=1 verbosity=2 n=100\

2>&1|$(bin)/debug2redmine >$@

%/logs/steps.by_col.log.sql: _always

	+$(steps)