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Revision 4679

Added by Aaron Marcuse-Kubitza almost 12 years ago

inputs/*/*/map.csv: Changed output column header from Veg+ to VegCore because the names will be VegCore names after automapping. This is possible now that we're using new automapping scripts that do not require a particular column header.

View differences:

inputs/ARIZ/Specimen/map.csv
1 
ARIZ,Veg+,Filter,Comments
1 
ARIZ,VegCore,Filter,Comments
2 2 
GlobalUniqueIdentifier,occurrenceID,,
3 3 
DateLastModified,dcterms:modified,,
4 4 
BasisOfRecord,BasisOfRecord,,
inputs/NCU-NCSC/Specimen/map.csv
1 
NCU-NCSC,Veg+,Filter,Comments
1 
NCU-NCSC,VegCore,Filter,Comments
2 2 
Accession Number,occurrenceID,,
3 3 
SeriesName,collectionCode,,
4 4 
Barcode,catalogNumber,,
inputs/MO/Specimen/map.csv
1 
MO,Veg+,Filter,Comments
1 
MO,VegCore,Filter,Comments
2 2 
CatalogNumber,catalogNumber,,
3 3 
DateLastModified,dcterms:modified,,
4 4 
InstitutionCode,institutionCode,,
inputs/VegBank/observation_/map.csv
1 
VegBank,Veg+,Filter,Comments
1 
VegBank,VegCore,Filter,Comments
2 2 
observation_id,eventID,,
3 3 
previousobs_id,previousobs_id,,
4 4 
plot_id,locationID,,
inputs/QMOR/Specimen/map.csv
1 
QMOR,Veg+,Filter,Comments
1 
QMOR,VegCore,Filter,Comments
2 2 
id,occurrenceID,,
3 3 
locationRemarks,locationRemarks,,
4 4 
decimalLongitude,decimalLongitude,,
inputs/MT/Specimen/map.csv
1 
MT,Veg+,Filter,Comments
1 
MT,VegCore,Filter,Comments
2 2 
id,occurrenceID,,
3 3 
establishmentMeans,establishmentMeans,,
4 4 
locality,locality,,
inputs/XAL/Specimen/map.csv
1 
XAL:/content/record/,Veg+,Filter,Comments
1 
XAL:/content/record/,VegCore,Filter,Comments
2 2 
darwin:DateLastModified,dcterms:modified,,
3 3 
darwin:InstitutionCode,institutionCode,,
4 4 
darwin:CollectionCode,collectionCode,,
inputs/TEAM/VL/map.csv
1 
TEAM,Veg+,Filter,Comments
1 
TEAM,VegCore,Filter,Comments
2 2 
ID,occurrenceID,,
3 3 
SiteName,projectName,,
4 4 
1haPlotCode,plotName,,
inputs/TEAM/VT/map.csv
1 
TEAM,Veg+,Filter,Comments
1 
TEAM,VegCore,Filter,Comments
2 2 
ID,occurrenceID,,
3 3 
ObservationDate,eventDate,,
4 4 
Family,family,,
inputs/NY/Specimen/map.csv
1 
NY,Veg+,Filter,Comments
1 
NY,VegCore,Filter,Comments
2 2 
key,key,,Not used because UniqueNYInternalRecordNumber is a better pkey
3 3 
DateLastModified,dcterms:modified,,
4 4 
InstitutionCode,institutionCode,,
inputs/Madidi/Organism/map.csv
1 
Madidi,Veg+,Filter,Comments
1 
Madidi,VegCore,Filter,Comments
2 2 
Expedition,projectName,,
3 3 
Inventory name,plotName,,
4 4 
Number of inventory (general),Number of inventory (general),,
inputs/Madidi/Plot/map.csv
1 
Madidi,Veg+,Filter,Comments
1 
Madidi,VegCore,Filter,Comments
2 2 
Inventory number,Inventory number,,Not globally unique
3 3 
Expedition number,projectID,,Consistent (globally unique) between PPM and PT data
4 4 
Expedition name,projectName,,Consistent (globally unique) between PPM and PT data
inputs/UNCC/Specimen/map.csv
1 
UNCC,Veg+,Filter,Comments
1 
UNCC,VegCore,Filter,Comments
2 2 
accession,occurrenceID,,
3 3 
herbarium,institutionCode,,
4 4 
family,family,,
inputs/ACAD/Specimen/map.csv
1 
ACAD,Veg+,Filter,Comments
1 
ACAD,VegCore,Filter,Comments
2 2 
id,occurrenceID,,
3 3 
basisOfRecord,basisOfRecord,,
4 4 
identifiedBy,identifiedBy,,
inputs/SALVIAS-CSV/Organism/map.csv
1 
SALVIAS-CSV,Veg+,Filter,Comments
1 
SALVIAS-CSV,VegCore,Filter,Comments
2 2 
OBSERVATION_ID,individualID,,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
3 3 
PLOT_ID,locationID,,
4 4 
plot_code,plotName,,
inputs/SALVIAS-CSV/Plot/map.csv
1 
SALVIAS-CSV,Veg+,Filter,Comments
1 
SALVIAS-CSV,VegCore,Filter,Comments
2 2 
project,projectName,,
3 3 
PLOT_ID,locationID,,"Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
4 4 
plot_code,plotName,,Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
inputs/CVS/Organism/map.csv
1 
CVS,Veg+,Filter,Comments
1 
CVS,VegCore,Filter,Comments
2 2 
authorObsCode,fieldNumber,,
3 3 
obsStartDate,startDate,,
4 4 
realLatitude,OMIT,,
inputs/REMIB/Specimen/map.csv
1 
REMIB,Veg+,Filter,Comments
1 
REMIB,VegCore,Filter,Comments
2 2 
acronym,collectionCode,,
3 3 
accession_number,occurrenceID,,
4 4 
family,family,,
inputs/CTFS/StemObservation/map.csv
1 
CTFS,Veg+,Filter,Comments
1 
CTFS,VegCore,Filter,Comments
2 2 
FamilyID,FamilyID,,
3 3 
GenusID,GenusID,,
4 4 
SpeciesID,SpeciesID,,
inputs/CTFS/Subplot/map.csv
1 
CTFS,Veg+,Filter,Comments
1 
CTFS,VegCore,Filter,Comments
2 2 
QuadratID,subplot,,Not globally unique; unique only within Site
3 3 
PlotID,locationID,,
4 4 
QuadratName,OMIT,,QuadratID is used for the same purpose
inputs/CTFS/PlotObservation/map.csv
1 
CTFS,Veg+,Filter,Comments
1 
CTFS,VegCore,Filter,Comments
2 2 
CensusID,eventID,,
3 3 
PlotID,locationID,,
4 4 
PlotCensusNumber,fieldNumber,,
inputs/CTFS/TaxonOccurrence/map.csv
1 
CTFS,Veg+,Filter,Comments
1 
CTFS,VegCore,Filter,Comments
2 2 
FamilyID,FamilyID,,
3 3 
GenusID,GenusID,,
4 4 
SpeciesID,SpeciesID,,
inputs/CTFS/SubplotObservation/map.csv
1 
CTFS,Veg+,Filter,Comments
1 
CTFS,VegCore,Filter,Comments
2 2 
CensusID,eventID,,
3 3 
QuadratID,subplot,,Not globally unique; unique only within Site
4 4 
PlotID,locationID,,
inputs/CTFS/Plot/map.csv
1 
CTFS,Veg+,Filter,Comments
1 
CTFS,VegCore,Filter,Comments
2 2 
CountryID,CountryID,,
3 3 
PlotID,locationID,,
4 4 
PlotName,plotName,,
inputs/FIA/Organism/map.csv
1 
FIA,Veg+,Filter,Comments
1 
FIA,VegCore,Filter,Comments
2 2 
TreeTag,tag,,
3 3 
Genus,genus,,
4 4 
SpecificEpithet,specificEpithet,,
inputs/SALVIAS/plotMetadata/map.csv
1 
SALVIAS,Veg+,Filter,Comments
1 
SALVIAS,VegCore,Filter,Comments
2 2 
PlotID,locationID,,"Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
3 3 
orig_filename,orig_filename,,
4 4 
AccessCode,AccessCode,,
inputs/SALVIAS/projects/map.csv
1 
SALVIAS,Veg+,Filter,Comments
1 
SALVIAS,VegCore,Filter,Comments
2 2 
project_id,projectID,,
3 3 
project_name,projectName,,
4 4 
project_pi,project_pi,,
inputs/SALVIAS/stems/map.csv
1 
SALVIAS,Veg+,Filter,Comments
1 
SALVIAS,VegCore,Filter,Comments
2 2 
stem_id,stemID,,
3 3 
origrecord_id_stems,origrecord_id_stems,,
4 4 
PlotObsID,individualID,,
inputs/SALVIAS/plotObservations/map.csv
1 
SALVIAS,Veg+,Filter,Comments
1 
SALVIAS,VegCore,Filter,Comments
2 2 
PlotObsID,individualID,,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
3 3 
PlotID,locationID,,
4 4 
PlotCode,plotName,,
inputs/U/Specimen/map.csv
1 
U,Veg+,Filter,Comments
1 
U,VegCore,Filter,Comments
2 2 
ID,occurrenceID,,
3 3 
Barcode,catalogNumber,,
4 4 
Collector,recordedBy,/_merge/1,
inputs/GBIF/Specimen/map.csv
1 
GBIF,Veg+,Filter,Comments
1 
GBIF,VegCore,Filter,Comments
2 2 
0,0,,
3 3 
1,1,,
4 4 
Collector,recordedBy,,
inputs/SpeciesLink/Specimen/map.csv
1 
SpeciesLink,Veg+,Filter,Comments
1 
SpeciesLink,VegCore,Filter,Comments
2 2 
dwc_dwcore_GlobalUniqueIdentifier,occurrenceID,,
3 3 
dwc_dwcore_DateLastModified,dcterms:modified,,
4 4 
dwc_dwcore_BasisOfRecord,BasisOfRecord,,
inputs/VegBank/taxonobservation_/map.csv
1 
VegBank,Veg+,Filter,Comments
1 
VegBank,VegCore,Filter,Comments
2 2 
plantconcept_id,plantconcept_id,,
3 3 
taxonobservation_id,taxonOccurrenceID,,
4 4 
observation_id,eventID,,
inputs/VegBank/plot_/map.csv
1 
VegBank,Veg+,Filter,Comments
1 
VegBank,VegCore,Filter,Comments
2 2 
plot_id,locationID,,
3 3 
authorplotcode,plotName,,
4 4 
reference_id,reference_id,,

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