Revision 4707
Added by Aaron Marcuse-Kubitza over 12 years ago
inputs/XAL/Specimen/VegBIEN.csv | ||
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27 | 27 |
darwin:InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
28 | 28 |
darwin:CollectorNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/1, |
29 | 29 |
darwin:FieldNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/2,"This historical DwC term (http://rs.tdwg.org/dwc/terms/history/index.htm#fieldNumber-2009-04-24) has close to the same meaning as recordNumber (http://rs.tdwg.org/dwc/terms/#recordNumber). It is also unused: `grep -F ""<darwin:FieldNumber>"" inputs/XAL/src/digir.specimens.xml` returns no lines." |
30 |
darwin:ScientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2,
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30 |
darwin:ScientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/3,
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31 | 31 |
darwin:IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first, |
32 | 32 |
darwin:IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/middlename/_namePart/middle, |
33 | 33 |
darwin:IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/surname/_namePart/last, |
inputs/NY/Specimen/VegBIEN.csv | ||
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29 | 29 |
InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
30 | 30 |
UniqueNYInternalRecordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
31 | 31 |
FieldNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1,Usage inconsistent with DwC definition |
32 |
ScientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2,
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32 |
ScientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/3,
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33 | 33 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first, |
34 | 34 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/middlename/_namePart/middle, |
35 | 35 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/surname/_namePart/last, |
inputs/Madidi/Organism/VegBIEN.csv | ||
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22 | 22 |
Subplot X,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/xposition, |
23 | 23 |
Subplot Y,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition, |
24 | 24 |
Tree number,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1, |
25 |
Specie+autor,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2,
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25 |
Specie+autor,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/3,
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26 | 26 |
Habit,"/location/locationevent/taxonoccurrence/growthform/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=*]/value","According to <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.habit>, <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/SALVIAS#Habit>" |
27 | 27 |
Determined by,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first, |
28 | 28 |
Determined by,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/middlename/_namePart/middle, |
inputs/UNCC/Specimen/VegBIEN.csv | ||
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18 | 18 |
herbarium,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
19 | 19 |
accession,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
20 | 20 |
collectno,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1, |
21 |
SciName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2,
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21 |
SciName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/3,
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22 | 22 |
cultivated,/location/locationevent/taxonoccurrence/iscultivated/_alt/1,Ignore other values |
23 | 23 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/family, |
24 | 24 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/genus, |
inputs/ACAD/Specimen/VegBIEN.csv | ||
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20 | 20 |
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
21 | 21 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
22 | 22 |
recordNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1, |
23 |
scientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2,
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23 |
scientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/3,
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24 | 24 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first, |
25 | 25 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/middlename/_namePart/middle, |
26 | 26 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/surname/_namePart/last, |
inputs/CVS/Organism/VegBIEN.csv | ||
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10 | 10 |
authorObsCode,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/authorlocationcode", |
11 | 11 |
obsStartDate,/location/locationevent/obsstartdate/_*/date/_alt/1, |
12 | 12 |
%cover,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover, |
13 |
currentTaxonName sec Weakley 2006,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2,
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13 |
currentTaxonName sec Weakley 2006,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/3,
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14 | 14 |
currentTaxonName sec Weakley 2006,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/scientificname, |
15 | 15 |
confidentialityStatus,,** No join mapping for confidentialityStatus ** |
16 | 16 |
realLatitude,,** No join mapping for OMIT ** |
inputs/ARIZ/Specimen/VegBIEN.csv | ||
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34 | 34 |
InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
35 | 35 |
GlobalUniqueIdentifier,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
36 | 36 |
CollectorNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1, |
37 |
ScientificNameAuthor,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2/_alt/1,Contains the binomial in addition to the authority
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38 |
ScientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2/_alt/2,
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37 |
ScientificNameAuthor,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/3/_alt/1,Contains the binomial in addition to the authority
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38 |
ScientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/3/_alt/2,
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39 | 39 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first, |
40 | 40 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/middlename/_namePart/middle, |
41 | 41 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/surname/_namePart/last, |
inputs/GBIF/Specimen/VegBIEN.csv | ||
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19 | 19 |
CollectionCD,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
20 | 20 |
InstitutionCD,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
21 | 21 |
ScientificNameOriginal,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/1, |
22 |
ScientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2,
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22 |
ScientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/3,
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23 | 23 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first, |
24 | 24 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/middlename/_namePart/middle, |
25 | 25 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/surname/_namePart/last, |
inputs/GBIF/Specimen/test.xml.ref | ||
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164 | 164 |
<authortaxoncode> |
165 | 165 |
<_alt> |
166 | 166 |
<1>$ScientificNameOriginal</1> |
167 |
<2>$ScientificName</2>
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167 |
<3>$ScientificName</3>
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168 | 168 |
</_alt> |
169 | 169 |
</authortaxoncode> |
170 | 170 |
<taxondetermination> |
inputs/NCU-NCSC/Specimen/VegBIEN.csv | ||
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13 | 13 |
Barcode,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
14 | 14 |
SeriesName,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
15 | 15 |
Accession Number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
16 |
Full Taxon Name,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2,
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16 |
Full Taxon Name,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/3,
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17 | 17 |
Cultivated?,/location/locationevent/taxonoccurrence/iscultivated/_alt/1, |
18 | 18 |
Full Taxon Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/scientificname, |
19 | 19 |
Barcode,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
inputs/SpeciesLink/Specimen/VegBIEN.csv | ||
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107 | 107 |
-----" |
108 | 108 |
conceptual_darwin_2003_1_0_CollectorNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/3, |
109 | 109 |
dwc_curatorial_CollectorNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/3, |
110 |
conceptual_darwin_2003_1_0_ScientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2,
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111 |
dwc_dwcore_ScientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2,
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112 |
dwc_terms_scientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2,
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110 |
conceptual_darwin_2003_1_0_ScientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/3,
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111 |
dwc_dwcore_ScientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/3,
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112 |
dwc_terms_scientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/3,
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113 | 113 |
conceptual_darwin_2003_1_0_IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first, |
114 | 114 |
dwc_curatorial_IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first, |
115 | 115 |
dwc_terms_identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first, |
inputs/MO/Specimen/VegBIEN.csv | ||
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24 | 24 |
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
25 | 25 |
InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
26 | 26 |
CollectorNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1, |
27 |
ScientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2,
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27 |
ScientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/3,
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28 | 28 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first, |
29 | 29 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/middlename/_namePart/middle, |
30 | 30 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/surname/_namePart/last, |
inputs/QMOR/Specimen/VegBIEN.csv | ||
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30 | 30 |
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/2, |
31 | 31 |
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
32 | 32 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
33 |
scientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2,
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33 |
scientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/3,
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34 | 34 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first, |
35 | 35 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/middlename/_namePart/middle, |
36 | 36 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/surname/_namePart/last, |
mappings/VegCore-VegBIEN.csv | ||
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106 | 106 |
organismY,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition, |
107 | 107 |
recordNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1, |
108 | 108 |
verbatimScientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/1, |
109 |
scientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2, |
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110 |
scientificNameWithAuthorship,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/3,
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109 |
scientificNameWithAuthorship,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2,
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110 |
scientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/3, |
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111 | 111 |
growthForm,/location/locationevent/taxonoccurrence/growthform, |
112 | 112 |
verbatimGrowthForm,"/location/locationevent/taxonoccurrence/growthform/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=*]/value","According to <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.habit>, <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/SALVIAS#Habit>" |
113 | 113 |
cultivated,/location/locationevent/taxonoccurrence/iscultivated/_alt/1, |
mappings/for_review/VegCore-VegBIEN.csv | ||
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106 | 106 |
organismY,//stemobservation/yposition, |
107 | 107 |
recordNumber,//taxonoccurrence/authortaxoncode, |
108 | 108 |
verbatimScientificName,//taxonoccurrence/authortaxoncode, |
109 |
scientificNameWithAuthorship,//taxonoccurrence/authortaxoncode, |
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109 | 110 |
scientificName,//taxonoccurrence/authortaxoncode, |
110 |
scientificNameWithAuthorship,//taxonoccurrence/authortaxoncode, |
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111 | 111 |
growthForm,//taxonoccurrence/growthform, |
112 | 112 |
verbatimGrowthForm,//taxonoccurrence/growthform,"According to <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.habit>, <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/SALVIAS#Habit>" |
113 | 113 |
cultivated,//taxonoccurrence/iscultivated, |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Moved scientificNameWithAuthorship before scientificName in taxonoccurrence.authortaxoncode's _alts