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Revision 4708

Added by Aaron Marcuse-Kubitza over 12 years ago

inputs/Madidi/Organism/map.csv: Remapped Specie+autor to new scientificNameWithAuthorship. Mapped Species and morphotypes to now-available scientificName.

View differences:

inputs/Madidi/Organism/map.csv
17 17 
Field family,verbatimFamily,,
18 18 
Field name,verbatimGenus,,Often = Genera
19 19 
Family (revised),family,,
20 
Specie+autor,scientificName,,
20 
Specie+autor,scientificNameWithAuthorship,,
21 21 
Genera,genus,,
22 22 
Specific epithet,specificEpithet,,
23 
Species and morphotypes,Species and morphotypes,,"Contains less than ""Specie+autor"""
23 
Species and morphotypes,scientificName,,"Contains less than ""Specie+autor"""
24 24 
Autor (revised),scientificNameAuthorship,,
25 25 
Determined by,identifiedBy,,
26 26 
Qualifier,identificationQualifier,,
inputs/Madidi/Organism/VegBIEN.csv
22 22 
Subplot X,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/xposition,
23 23 
Subplot Y,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition,
24 24 
Tree number,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1,
25 
Specie+autor,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/3,
25 
Specie+autor,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2,
26 
Species and morphotypes,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/3,"Contains less than ""Specie+autor"""
26 27 
Habit,"/location/locationevent/taxonoccurrence/growthform/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=*]/value","According to <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.habit>, <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/SALVIAS#Habit>"
27 28 
Determined by,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first,
28 29 
Determined by,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/middlename/_namePart/middle,
29 30 
Determined by,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/surname/_namePart/last,
30 31 
Family (revised),/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/family,
31 32 
Genera,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/genus,
32 
Specie+autor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/scientificname,
33 
Species and morphotypes,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/scientificname,"Contains less than ""Specie+autor"""
33 34 
Autor (revised),/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/scientificnameauthor,
35 
Specie+autor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/scientificnamewithauthor,
34 36 
Specific epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/species,
35 37 
Qualifier,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit,
36 38 
Field family,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/plantconcept/family,
......
52 54 
Plot specimen,,** No join mapping for Plot specimen **
53 55 
Project specimen,,** No join mapping for Project specimen **
54 56 
Similar specimen,,** No join mapping for Similar specimen **
55 
Species and morphotypes,,"** No join mapping for Species and morphotypes ** Contains less than ""Specie+autor"""
56 57 
"Type Inventory (C, PP, TP)",,"** No join mapping for Type Inventory (C, PP, TP) ** "
inputs/Madidi/Organism/test.xml.ref
44 44 
                        <authortaxoncode>
45 45 
                            <_alt>
46 46 
                                <1>$Tree number</1>
47 
                                <2>$Specie+autor</2>
47 
                                <2>
48 
                                    <_alt>
49 
                                        <2>$Specie+autor</2>
50 
                                        <3>$Species and morphotypes</3>
51 
                                    </_alt>
52 
                                </2>
48 53 
                            </_alt>
49 54 
                        </authortaxoncode>
50 55 
                        <growthform>
......
80 85 
                                <plantconcept>
81 86 
                                    <family>$Family (revised)</family>
82 87 
                                    <genus>$Genera</genus>
83 
                                    <scientificname>$Specie+autor</scientificname>
88 
                                    <scientificname>$Species and morphotypes</scientificname>
84 89 
                                    <scientificnameauthor>$Autor (revised)</scientificnameauthor>
90 
                                    <scientificnamewithauthor>$Specie+autor</scientificnamewithauthor>
85 91 
                                    <species>$Specific epithet</species>
86 92 
                                </plantconcept>
87 93 
                            </plantconcept_id>
inputs/Madidi/Organism/new_terms.csv
11 11 
Family (revised)
12 12 
Specie+autor
13 13 
Genera
14 
Species and morphotypes
14 15 
Autor (revised)
15 16 
Determined by
16 17 
Qualifier
inputs/Madidi/Organism/unmapped_terms.csv
5 5 
Plot specimen
6 6 
Expedition specimen
7 7 
Project specimen
8 
Species and morphotypes
9 8 
Common name
10 9 
Circumference
11 10 
Bole height

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