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Revision 4744

Added by Aaron Marcuse-Kubitza over 12 years ago

mappings/VegCore-VegBIEN.csv: Mapped subspecies, variety, forma, cultivar

View differences:

inputs/VegBank/taxonobservation_/map.csv
61 61 
Genus,genus,,
62 62 
Species,specificEpithet,,
63 63 
Subspecies,infraspecificEpithet,,
64 
Variety,Variety,,
65 
Forma,Forma,,
64 
Variety,variety,,
65 
Forma,forma,,
66 66 
row_num,row_num,,
inputs/VegBank/taxonobservation_/VegBIEN.csv
10 10 
taxonobservation_id,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/1,
11 11 
Class,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/class,
12 12 
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/family,
13 
Forma,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/forma,
13 14 
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/genus,
14 15 
Kingdom,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/kingdom,
15 16 
Order,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/order,
16 17 
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/species,
17 18 
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_name/last,
19 
Variety,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/variety,
18 20 
interpretationdate,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_*/date/_dateRangeStart/value,
19 21 
taxonfit,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit,
20 22 
authorplantname,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/scientificname,
21 23 
museumaccessionnumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
22 24 
Division,,** No join mapping for Division **
23 
Forma,,** No join mapping for Forma **
24 25 
Subclass,,** No join mapping for Subclass **
25 26 
Subdivision,,** No join mapping for Subdivision **
26 27 
Subkingdom,,** No join mapping for Subkingdom **
27 28 
Superdivision,,** No join mapping for Superdivision **
28 
Variety,,** No join mapping for Variety **
29 29 
collectionnumber,,** No join mapping for collectionnumber **
30 30 
collector_id,,** No join mapping for collector_id **
31 31 
currentinterpretation,,** No join mapping for currentinterpretation **
inputs/VegBank/taxonobservation_/test.xml.ref
20 20 
                                <taxonpath>
21 21 
                                    <class>$Class</class>
22 22 
                                    <family>$Family</family>
23 
                                    <forma>$Forma</forma>
23 24 
                                    <genus>$Genus</genus>
24 25 
                                    <kingdom>$Kingdom</kingdom>
25 26 
                                    <order>$Order</order>
26 27 
                                    <species>$Species</species>
27 28 
                                    <subspecies>$Subspecies</subspecies>
29 
                                    <variety>$Variety</variety>
28 30 
                                </taxonpath>
29 31 
                            </taxonpath_id>
30 32 
                            <determinationdate><_date><date><_dateRangeStart><value>$interpretationdate</value></_dateRangeStart></date></_date></determinationdate>
inputs/VegBank/taxonobservation_/unmapped_terms.csv
45 45 
Division
46 46 
Subdivision
47 47 
Subclass
48 
Variety
49 
Forma
50 48 
row_num
mappings/VegCore-VegBIEN.csv
115 115 
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/middlename/_namePart/middle,
116 116 
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/surname/_namePart/last,
117 117 
class,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/class,
118 
cultivar,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/cultivar,
118 119 
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/family,
120 
forma,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/forma,
119 121 
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/genus,
120 122 
kingdom,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/kingdom,
121 123 
order,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/order,
......
124 126 
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/scientificnameauthor,
125 127 
scientificNameWithAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/scientificnamewithauthor,
126 128 
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/species,
129 
subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies,
127 130 
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_name/first,
128 131 
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_name/last,
132 
variety,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/variety,
129 133 
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_*/date/_dateRangeStart/value,
130 134 
dayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
131 135 
monthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
mappings/for_review/VegCore-VegBIEN.csv
115 115 
identifiedBy,//taxonoccurrence/taxondetermination[]/*_id/party/middlename,
116 116 
identifiedBy,//taxonoccurrence/taxondetermination[]/*_id/party/surname,
117 117 
class,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/class,
118 
cultivar,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/cultivar,
118 119 
family,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/family,
120 
forma,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/forma,
119 121 
genus,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/genus,
120 122 
kingdom,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/kingdom,
121 123 
order,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/order,
......
124 126 
scientificNameAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/scientificnameauthor,
125 127 
scientificNameWithAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/scientificnamewithauthor,
126 128 
specificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/species,
129 
subspecies,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/subspecies,
127 130 
taxonRank,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/subspecies,
128 131 
infraspecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/subspecies,
132 
variety,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/variety,
129 133 
dateIdentified,//taxonoccurrence/taxondetermination[]/determinationdate/_*/date,
130 134 
dayIdentified,//taxonoccurrence/taxondetermination[]/determinationdate,
131 135 
monthIdentified,//taxonoccurrence/taxondetermination[]/determinationdate,

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