Revision 4759
Added by Aaron Marcuse-Kubitza over 12 years ago
inputs/SALVIAS-CSV/Organism/VegBIEN.csv | ||
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29 | 29 |
HAVING count(DISTINCT census_date) > 1 |
30 | 30 |
-----" |
31 | 31 |
no_of_individuals,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,"Brad: This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this." |
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cover_percent,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover_frac, |
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cover_percent,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover_frac/_pct_to_frac/value,
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33 | 33 |
census_no,"/location/locationevent/taxonoccurrence/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue","Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not." |
34 | 34 |
intercept_cm,/location/locationevent/taxonoccurrence/aggregateoccurrence/linecover_m,"Brad: This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance." |
35 | 35 |
individual_code,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot." |
inputs/SALVIAS-CSV/Organism/test.xml.ref | ||
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17 | 17 |
<taxonoccurrence> |
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<aggregateoccurrence> |
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<count>$no_of_individuals</count> |
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<cover_frac>$cover_percent</cover_frac>
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<cover_frac><_pct_to_frac><value>$cover_percent</value></_pct_to_frac></cover_frac>
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21 | 21 |
<definedvalue fkey="tablerecord_id"> |
22 | 22 |
<userdefined_id> |
23 | 23 |
<userdefined> |
inputs/CVS/Organism/VegBIEN.csv | ||
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7 | 7 |
authorObsCode,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/cond/_exists/_first/2", |
8 | 8 |
authorObsCode,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/authorlocationcode", |
9 | 9 |
obsStartDate,/location/locationevent/obsstartdate/_*/date/_alt/1, |
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%cover,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover_frac, |
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%cover,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover_frac/_pct_to_frac/value,
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11 | 11 |
currentTaxonName sec Weakley 2006,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/3, |
12 | 12 |
currentTaxonName sec Weakley 2006,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/scientificname, |
13 | 13 |
county,/location/locationplace/*_id/placepath/county, |
inputs/CVS/Organism/test.xml.ref | ||
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26 | 26 |
<authoreventcode>$authorObsCode</authoreventcode> |
27 | 27 |
<obsstartdate><_date><date>$obsStartDate</date></_date></obsstartdate> |
28 | 28 |
<taxonoccurrence> |
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<aggregateoccurrence><cover_frac>$%cover</cover_frac></aggregateoccurrence>
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<aggregateoccurrence><cover_frac><_pct_to_frac><value>$%cover</value></_pct_to_frac></cover_frac></aggregateoccurrence>
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<authortaxoncode>$currentTaxonName sec Weakley 2006</authortaxoncode> |
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<taxondetermination><taxonpath_id><taxonpath><scientificname>$currentTaxonName sec Weakley 2006</scientificname></taxonpath></taxonpath_id></taxondetermination> |
32 | 32 |
</taxonoccurrence> |
inputs/SALVIAS/plotObservations/VegBIEN.csv | ||
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29 | 29 |
HAVING count(DISTINCT census_date) > 1 |
30 | 30 |
-----" |
31 | 31 |
NoInd,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,"Brad: This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this." |
32 |
cover_percent,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover_frac, |
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cover_percent,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover_frac/_pct_to_frac/value,
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33 | 33 |
census_no,"/location/locationevent/taxonoccurrence/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue","Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not." |
34 | 34 |
intercept_cm,/location/locationevent/taxonoccurrence/aggregateoccurrence/linecover_m,"Brad: This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance." |
35 | 35 |
Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
inputs/SALVIAS/plotObservations/test.xml.ref | ||
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17 | 17 |
<taxonoccurrence> |
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<aggregateoccurrence> |
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<count>$NoInd</count> |
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<cover_frac>$cover_percent</cover_frac>
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<cover_frac><_pct_to_frac><value>$cover_percent</value></_pct_to_frac></cover_frac>
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21 | 21 |
<definedvalue fkey="tablerecord_id"> |
22 | 22 |
<userdefined_id> |
23 | 23 |
<userdefined> |
mappings/VegCore-VegBIEN.csv | ||
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71 | 71 |
monthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
72 | 72 |
yearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
73 | 73 |
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
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coverPercent,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover_frac, |
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coverPercent,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover_frac/_pct_to_frac/value,
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75 | 75 |
censusNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue", |
76 | 76 |
volumeCanopy,/location/locationevent/taxonoccurrence/aggregateoccurrence/linecover_m, |
77 | 77 |
fieldNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: coverPercent: Convert to fraction using _pct_to_frac()