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Revision 4767

inputs/*/*/map.csv: Remapped applicable plotArea fields to plotAreaHa

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inputs/Madidi/Plot/map.csv
9 9
Installed and evaluated by,Installed and evaluated by,,"Need a way to store a verbatim list of people, or a function to parse it and insert it iteratively into party"
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Collaborators,Collaborators,,"Need a way to store a verbatim list of people, or a function to parse it and insert it iteratively into party"
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Related Epilocs,Related Epilocs,,"It appears to be a list of people, some with #s after them. It doesn't seem like the definition of Epiloc at <http://rithm.wikispaces.com/Tropicos.Epiloc>, which relates to individual specimens, not whole plots."
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Area,plotArea,,
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Area,plotAreaHa,,"""0.1 ha transects"" (""Madidi Transects"" description in <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/BIEN2.datasources.xlsx>)"
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Number of stems,Number of stems,,Do we want to store this data?
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Number of trees,Number of trees,,Do we want to store this data?
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Coordinates,Coordinates,,Concatenation of Latitude (DMS) and Longitude (DMS)
inputs/Madidi/Plot/VegBIEN.csv
4 4
Inventory code,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode",
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Inventory name,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode",
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Inventory code,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode",
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Area,/location/area_m2,
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Area,/location/area_m2/_ha_to_m2/value,"""0.1 ha transects"" (""Madidi Transects"" description in <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/BIEN2.datasources.xlsx>)"
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Altitude,"/location/elevation_m/_alt/1/_replace:[""\bca\.?""=]/value",
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Minimum altitude,"/location/elevation_m/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",
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Minimum altitude,"/location/elevationrange_m/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",
inputs/Madidi/Plot/test.xml.ref
6 6
            <location>
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                <authorlocationcode>$Inventory name</authorlocationcode>
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                <sourceaccessioncode>$Inventory code</sourceaccessioncode>
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                <area_m2>$Area</area_m2>
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                <area_m2><_ha_to_m2><value>$Area</value></_ha_to_m2></area_m2>
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                <elevation_m>
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                    <_alt>
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                        <1>
inputs/SALVIAS-CSV/Plot/map.csv
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life_zone_code,communityName,,
38 38
observation_type,observation_type,,"Brad: SALVIAS internal metadata indicating whether the record represents an individual or aggregate observation. Rather than storing, use to decide where to store in VegX.; Aaron: VegX aggregateOrganismObservation table is missing many fields available in individualOrganismObservation, so we're mapping to individualOrganismObservation regardless of observation type"
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plot_methodology,samplingProtocol,,
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plot_area_ha,plotArea,,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
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plot_area_ha,plotAreaHa,,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
41 41
recensused,recensused,,"Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a  plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values"
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date_start,startDate,,
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date_finish,endDate,,
inputs/SALVIAS-CSV/Plot/VegBIEN.csv
4 4
PLOT_ID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
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plot_code,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
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PLOT_ID,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
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plot_area_ha,/location/area_m2,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
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plot_area_ha,/location/area_m2/_ha_to_m2/value,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
8 8
elev_m,"/location/elevation_m/_alt/1/_replace:[""\bca\.?""=]/value",Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick.
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elev_max_m,"/location/elevation_m/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
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elev_min_m,"/location/elevation_m/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",
inputs/SALVIAS-CSV/Plot/test.xml.ref
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            <location>
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                <authorlocationcode>$plot_code</authorlocationcode>
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                <sourceaccessioncode>$PLOT_ID</sourceaccessioncode>
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                <area_m2>$plot_area_ha</area_m2>
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                <area_m2><_ha_to_m2><value>$plot_area_ha</value></_ha_to_m2></area_m2>
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                <elevation_m>
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                    <_alt>
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                        <1>
inputs/CTFS/Plot/map.csv
8 8
Elevation,verbatimElevation,,
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ReferenceX,ReferenceX,,Rarely used
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ReferenceY,ReferenceY,,Rarely used
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SizeOfSite,plotArea,,
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SizeOfSite,plotAreaHa,,"""Size in hectares"" (SizeOfSite comments in <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/CTFS/_src/ctfs-comments_worksheet.xls>)"
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ShapeOfSite,footprintWKT,,
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DescriptionOfSite,locality,,
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CountryName,country,,
inputs/CTFS/Plot/VegBIEN.csv
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PlotID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode",
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PlotName,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode",
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PlotID,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode",
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SizeOfSite,/location/area_m2,
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SizeOfSite,/location/area_m2/_ha_to_m2/value,"""Size in hectares"" (SizeOfSite comments in <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/CTFS/_src/ctfs-comments_worksheet.xls>)"
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Elevation,"/location/elevation_m/_alt/1/_replace:[""\bca\.?""=]/value",
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ShapeOfSite,/location/locationcoords/footprintgeometry_dwc,
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Latitude,"/location/locationcoords/latitude_deg/_alt/2/_nullIf:[null=0,type=float]/value",
inputs/CTFS/Plot/test.xml.ref
6 6
            <location>
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                <authorlocationcode>$PlotName</authorlocationcode>
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                <sourceaccessioncode>$PlotID</sourceaccessioncode>
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                <area_m2>$SizeOfSite</area_m2>
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                <area_m2><_ha_to_m2><value>$SizeOfSite</value></_ha_to_m2></area_m2>
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                <elevation_m>
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                    <_replace>
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                        <\bca\.?></\bca\.?>
inputs/SALVIAS/plotMetadata/map.csv
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life_zone,communityName,,
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PlotMethod,samplingProtocol,,
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MethodCode,MethodCode,,
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plot_area_ha,plotArea,,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
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plot_area_ha,plotAreaHa,,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
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recensused,recensused,,"Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a  plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values"
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date_start,startDate,,
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date_finish,endDate,,
inputs/SALVIAS/plotMetadata/VegBIEN.csv
4 4
PlotID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
5 5
SiteCode,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
6 6
PlotID,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
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plot_area_ha,/location/area_m2,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
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plot_area_ha,/location/area_m2/_ha_to_m2/value,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
8 8
Elev,"/location/elevation_m/_alt/1/_replace:[""\bca\.?""=]/value",Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick.
9 9
elev_max_m,"/location/elevation_m/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
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elev_min_m,"/location/elevation_m/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",
inputs/SALVIAS/plotMetadata/test.xml.ref
6 6
            <location>
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                <authorlocationcode>$SiteCode</authorlocationcode>
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                <sourceaccessioncode>$PlotID</sourceaccessioncode>
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                <area_m2>$plot_area_ha</area_m2>
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                <area_m2><_ha_to_m2><value>$plot_area_ha</value></_ha_to_m2></area_m2>
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                <elevation_m>
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                    <_alt>
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                        <1>

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