Revision 4767
Added by Aaron Marcuse-Kubitza about 12 years ago
inputs/Madidi/Plot/map.csv | ||
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9 | 9 |
Installed and evaluated by,Installed and evaluated by,,"Need a way to store a verbatim list of people, or a function to parse it and insert it iteratively into party" |
10 | 10 |
Collaborators,Collaborators,,"Need a way to store a verbatim list of people, or a function to parse it and insert it iteratively into party" |
11 | 11 |
Related Epilocs,Related Epilocs,,"It appears to be a list of people, some with #s after them. It doesn't seem like the definition of Epiloc at <http://rithm.wikispaces.com/Tropicos.Epiloc>, which relates to individual specimens, not whole plots." |
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Area,plotArea,,
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Area,plotAreaHa,,"""0.1 ha transects"" (""Madidi Transects"" description in <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/BIEN2.datasources.xlsx>)"
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13 | 13 |
Number of stems,Number of stems,,Do we want to store this data? |
14 | 14 |
Number of trees,Number of trees,,Do we want to store this data? |
15 | 15 |
Coordinates,Coordinates,,Concatenation of Latitude (DMS) and Longitude (DMS) |
inputs/Madidi/Plot/VegBIEN.csv | ||
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4 | 4 |
Inventory code,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode", |
5 | 5 |
Inventory name,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode", |
6 | 6 |
Inventory code,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode", |
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Area,/location/area_m2,
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Area,/location/area_m2/_ha_to_m2/value,"""0.1 ha transects"" (""Madidi Transects"" description in <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/BIEN2.datasources.xlsx>)"
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8 | 8 |
Altitude,"/location/elevation_m/_alt/1/_replace:[""\bca\.?""=]/value", |
9 | 9 |
Minimum altitude,"/location/elevation_m/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value", |
10 | 10 |
Minimum altitude,"/location/elevationrange_m/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value", |
inputs/Madidi/Plot/test.xml.ref | ||
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6 | 6 |
<location> |
7 | 7 |
<authorlocationcode>$Inventory name</authorlocationcode> |
8 | 8 |
<sourceaccessioncode>$Inventory code</sourceaccessioncode> |
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<area_m2>$Area</area_m2>
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<area_m2><_ha_to_m2><value>$Area</value></_ha_to_m2></area_m2>
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10 | 10 |
<elevation_m> |
11 | 11 |
<_alt> |
12 | 12 |
<1> |
inputs/SALVIAS-CSV/Plot/map.csv | ||
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37 | 37 |
life_zone_code,communityName,, |
38 | 38 |
observation_type,observation_type,,"Brad: SALVIAS internal metadata indicating whether the record represents an individual or aggregate observation. Rather than storing, use to decide where to store in VegX.; Aaron: VegX aggregateOrganismObservation table is missing many fields available in individualOrganismObservation, so we're mapping to individualOrganismObservation regardless of observation type" |
39 | 39 |
plot_methodology,samplingProtocol,, |
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plot_area_ha,plotArea,,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed" |
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plot_area_ha,plotAreaHa,,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
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41 | 41 |
recensused,recensused,,"Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values" |
42 | 42 |
date_start,startDate,, |
43 | 43 |
date_finish,endDate,, |
inputs/SALVIAS-CSV/Plot/VegBIEN.csv | ||
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4 | 4 |
PLOT_ID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata." |
5 | 5 |
plot_code,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project) |
6 | 6 |
PLOT_ID,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata." |
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plot_area_ha,/location/area_m2,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed" |
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plot_area_ha,/location/area_m2/_ha_to_m2/value,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
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8 | 8 |
elev_m,"/location/elevation_m/_alt/1/_replace:[""\bca\.?""=]/value",Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick. |
9 | 9 |
elev_max_m,"/location/elevation_m/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
10 | 10 |
elev_min_m,"/location/elevation_m/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value", |
inputs/SALVIAS-CSV/Plot/test.xml.ref | ||
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6 | 6 |
<location> |
7 | 7 |
<authorlocationcode>$plot_code</authorlocationcode> |
8 | 8 |
<sourceaccessioncode>$PLOT_ID</sourceaccessioncode> |
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<area_m2>$plot_area_ha</area_m2>
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<area_m2><_ha_to_m2><value>$plot_area_ha</value></_ha_to_m2></area_m2>
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10 | 10 |
<elevation_m> |
11 | 11 |
<_alt> |
12 | 12 |
<1> |
inputs/CTFS/Plot/map.csv | ||
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8 | 8 |
Elevation,verbatimElevation,, |
9 | 9 |
ReferenceX,ReferenceX,,Rarely used |
10 | 10 |
ReferenceY,ReferenceY,,Rarely used |
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SizeOfSite,plotArea,,
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SizeOfSite,plotAreaHa,,"""Size in hectares"" (SizeOfSite comments in <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/CTFS/_src/ctfs-comments_worksheet.xls>)"
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12 | 12 |
ShapeOfSite,footprintWKT,, |
13 | 13 |
DescriptionOfSite,locality,, |
14 | 14 |
CountryName,country,, |
inputs/CTFS/Plot/VegBIEN.csv | ||
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4 | 4 |
PlotID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode", |
5 | 5 |
PlotName,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode", |
6 | 6 |
PlotID,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode", |
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SizeOfSite,/location/area_m2,
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SizeOfSite,/location/area_m2/_ha_to_m2/value,"""Size in hectares"" (SizeOfSite comments in <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/CTFS/_src/ctfs-comments_worksheet.xls>)"
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8 | 8 |
Elevation,"/location/elevation_m/_alt/1/_replace:[""\bca\.?""=]/value", |
9 | 9 |
ShapeOfSite,/location/locationcoords/footprintgeometry_dwc, |
10 | 10 |
Latitude,"/location/locationcoords/latitude_deg/_alt/2/_nullIf:[null=0,type=float]/value", |
inputs/CTFS/Plot/test.xml.ref | ||
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6 | 6 |
<location> |
7 | 7 |
<authorlocationcode>$PlotName</authorlocationcode> |
8 | 8 |
<sourceaccessioncode>$PlotID</sourceaccessioncode> |
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<area_m2>$SizeOfSite</area_m2>
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<area_m2><_ha_to_m2><value>$SizeOfSite</value></_ha_to_m2></area_m2>
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10 | 10 |
<elevation_m> |
11 | 11 |
<_replace> |
12 | 12 |
<\bca\.?></\bca\.?> |
inputs/SALVIAS/plotMetadata/map.csv | ||
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56 | 56 |
life_zone,communityName,, |
57 | 57 |
PlotMethod,samplingProtocol,, |
58 | 58 |
MethodCode,MethodCode,, |
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plot_area_ha,plotArea,,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed" |
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plot_area_ha,plotAreaHa,,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
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60 | 60 |
recensused,recensused,,"Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values" |
61 | 61 |
date_start,startDate,, |
62 | 62 |
date_finish,endDate,, |
inputs/SALVIAS/plotMetadata/VegBIEN.csv | ||
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4 | 4 |
PlotID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata." |
5 | 5 |
SiteCode,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project) |
6 | 6 |
PlotID,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata." |
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plot_area_ha,/location/area_m2,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed" |
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plot_area_ha,/location/area_m2/_ha_to_m2/value,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
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8 | 8 |
Elev,"/location/elevation_m/_alt/1/_replace:[""\bca\.?""=]/value",Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick. |
9 | 9 |
elev_max_m,"/location/elevation_m/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
10 | 10 |
elev_min_m,"/location/elevation_m/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value", |
inputs/SALVIAS/plotMetadata/test.xml.ref | ||
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6 | 6 |
<location> |
7 | 7 |
<authorlocationcode>$SiteCode</authorlocationcode> |
8 | 8 |
<sourceaccessioncode>$PlotID</sourceaccessioncode> |
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<area_m2>$plot_area_ha</area_m2>
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<area_m2><_ha_to_m2><value>$plot_area_ha</value></_ha_to_m2></area_m2>
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10 | 10 |
<elevation_m> |
11 | 11 |
<_alt> |
12 | 12 |
<1> |
Also available in: Unified diff
inputs/*/*/map.csv: Remapped applicable plotArea fields to plotAreaHa