Project

General

Profile

1
VegCore,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
2
subplotID,"/location/_if[@name=""if subplot""]/cond/_exists/_first/1",
3
subplot,"/location/_if[@name=""if subplot""]/cond/_exists/_first/2",
4
plotName,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1",
5
locationID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists",
6
fieldNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/else",
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occurrenceID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
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institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
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collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
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collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/2",
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voucherType,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
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catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
13
locationID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode",
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plotName,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode",
15
locationID,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode",
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plotArea_m2,/location/area_m2,
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plotArea_ha,/location/area_m2/_ha_to_m2/value,
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subplot,/location/authorlocationcode,
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verbatimElevation,"/location/elevation_m/_alt/1/_replace:[""\bca\.?""=]/value",
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maximumElevationInMeters,"/location/elevation_m/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
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minimumElevationInMeters,"/location/elevation_m/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",
22
minimumElevationInMeters,"/location/elevationrange_m/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",
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maximumElevationInMeters,"/location/elevationrange_m/_range/to/_units:[default=m,to=m,to=]/value/_alt/1/_replace:[""\bca\.?""=]/value",
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minimumElevationInMeters,"/location/elevationrange_m/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value",
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landform,/location/landform,
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coordinateUncertaintyInMeters,/location/locationcoords/coordsaccuracy_deg/_noCV/value/_alt/1,
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coordinatePrecision,/location/locationcoords/coordsaccuracy_deg/_noCV/value/_alt/2,
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footprintWKT,/location/locationcoords/footprintgeometry_dwc,
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decimalLatitude,"/location/locationcoords/latitude_deg/_alt/1/_nullIf:[null=0,type=float]/value",
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verbatimLatitude,"/location/locationcoords/latitude_deg/_alt/2/_nullIf:[null=0,type=float]/value",
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decimalLongitude,"/location/locationcoords/longitude_deg/_alt/1/_nullIf:[null=0,type=float]/value",
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verbatimLongitude,"/location/locationcoords/longitude_deg/_alt/2/_nullIf:[null=0,type=float]/value",
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samplingProtocol,/location/locationevent/*_id/method/name,
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projectName,/location/locationevent/*_id/project/projectname,
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projectID,/location/locationevent/*_id/project/sourceaccessioncode,
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subplotID,"/location/locationevent/_if[@name=""if subplot""]/cond/_exists/_first/1",
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subplot,"/location/locationevent/_if[@name=""if subplot""]/cond/_exists/_first/2",
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fieldNumber,"/location/locationevent/_if[@name=""if subplot""]/else/authoreventcode",
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eventID,"/location/locationevent/_if[@name=""if subplot""]/else/sourceaccessioncode",
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eventID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/cond/_exists/_first/1",
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fieldNumber,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/cond/_exists/_first/2",
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plotName,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/authorlocationcode",
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locationID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode",
44
fieldNumber,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/authorlocationcode",
45
eventID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/sourceaccessioncode",
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communityID,/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname,
47
communityName,/location/locationevent/commclass/commdetermination/*_id/commconcept/commdescription,
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endDate,/location/locationevent/obsenddate/_*/date/_alt/1,
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eventDate,/location/locationevent/obsenddate/_*/date/_alt/2/_dateRangeEnd/value,
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startDate,/location/locationevent/obsstartdate/_*/date/_alt/1,
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eventDate,/location/locationevent/obsstartdate/_*/date/_alt/2/_dateRangeStart/value,
52
precipitation,/location/locationevent/precipitation_m,
53
acidity,/location/locationevent/soilobs/acidity_frac,
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baseSaturation,/location/locationevent/soilobs/basesaturation_frac,
55
calcium,/location/locationevent/soilobs/calcium_frac,
56
carbon,/location/locationevent/soilobs/carbon_frac,
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cationExchangeCapacity,/location/locationevent/soilobs/cationexchangecapacity_cmol_kg,
58
clay,/location/locationevent/soilobs/clay_frac,
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conductivity,/location/locationevent/soilobs/conductivity,
60
magnesium,/location/locationevent/soilobs/magnesium_frac,
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nitrogen,/location/locationevent/soilobs/nitrogen_frac,
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organic,/location/locationevent/soilobs/organic_frac,
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ph,/location/locationevent/soilobs/ph,
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phosphorus,/location/locationevent/soilobs/phosphorus_frac,
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potassium,/location/locationevent/soilobs/potassium_frac,
66
sand,/location/locationevent/soilobs/sand_frac,
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silt,/location/locationevent/soilobs/silt_frac,
68
sodium,/location/locationevent/soilobs/sodium_frac,
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texture,/location/locationevent/soilobs/texture,
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dateCollected,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1/_*/date,
71
dayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
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monthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
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yearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
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individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,
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coverPercent,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover_frac/_pct_to_frac/value,
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censusNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue",
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volumeCanopy,/location/locationevent/taxonoccurrence/aggregateoccurrence/linecover_m,
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fieldNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes,
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recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber,
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sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections"
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individualID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode,
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voucherType,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
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catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
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collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
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collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/2,
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institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname,
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occurrenceID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,
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stemCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemcount,
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authorStemCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/authorstemcode,
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basalDiameter,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/basaldiameter_m,
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canopyForm,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tablerecord_id]/definedvalue",
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canopyPosition,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tablerecord_id]/definedvalue",
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diameterBreastHeightGentry,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]:[@fkey=tablerecord_id]/definedvalue",
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lianaInfestation,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tablerecord_id]/definedvalue",
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stemNotes,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]:[@fkey=tablerecord_id]/definedvalue",
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diameterBreastHeight,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight_m,
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height,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/height_m,
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heightFirstBranch,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/heightfirstbranch_m,
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stemID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/sourceaccessioncode,
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tag,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[""""/iscurrent/_alt/2=true]/tag",Quotes sort it before tag2
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previousTag,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[iscurrent=true]:[../stemtag?[iscurrent/_alt/2=true]/iscurrent/_alt/1=false]/tag,
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organismX,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/xposition_m,
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organismY,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition_m,
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recordNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1,
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verbatimScientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/1,
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scientificNameWithAuthorship,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2,
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scientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/3,
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growthForm,/location/locationevent/taxonoccurrence/growthform,
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verbatimGrowthForm,"/location/locationevent/taxonoccurrence/growthform/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=*]/value","According to <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.habit>, <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/SALVIAS#Habit>"
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cultivated,/location/locationevent/taxonoccurrence/iscultivated/_alt/1,
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establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_alt/2/_map:[cultivated=t,wild=f,*=]/value",
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establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value",
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taxonOccurrenceID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/1,
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individualID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2,
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identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first,
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identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/middlename/_namePart/middle,
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identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/surname/_namePart/last,
118
class,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/class,
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cultivar,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/cultivar,
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family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/family,
121
forma,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/forma,
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genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/genus,
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kingdom,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/kingdom,
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order,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/order,
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phylum,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/phylum,
126
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/scientificname,
127
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/scientificnameauthor,
128
scientificNameWithAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/scientificnamewithauthor,
129
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/species,
130
subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/1,
131
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/2/_name/first,
132
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/2/_name/last,
133
variety,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/variety,
134
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_*/date/_dateRangeStart/value,
135
dayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
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monthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
137
yearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
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taxonRemarks,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/notes,
139
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit,
140
verbatimClass,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/class,
141
verbatimFamily,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/family,
142
verbatimGenus,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/genus,
143
verbatimKingdom,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/kingdom,
144
verbatimOrder,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/order,
145
verbatimPhylum,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/phylum,
146
verbatimScientificName,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/scientificname,
147
verbatimScientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/scientificnameauthor,
148
verbatimSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/species,
149
verbatimInfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/subspecies,
150
verbatimIdentificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/taxonfit,
151
recordedBy,/location/locationevent/taxonoccurrence/verbatimcollectorname,
152
recordedBy.givenName,/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/first,
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recordedBy.surName,/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/last,
154
voucherType,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
155
catalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
156
temperature,/location/locationevent/temperature_c,
157
maximumDepthInMeters,"/location/locationevent/waterdepth_m/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
158
minimumDepthInMeters,"/location/locationevent/waterdepth_m/_avg/min/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
159
locality,/location/locationnarrative/_merge/1,
160
verbatimLocality,/location/locationnarrative/_merge/2,
161
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
162
continent,/location/locationplace/*_id/placepath/continent,
163
country,/location/locationplace/*_id/placepath/country,
164
county,/location/locationplace/*_id/placepath/county,
165
stateProvince,/location/locationplace/*_id/placepath/stateprovince,
166
plotNotes,/location/notespublic,
167
slopeAspect,/location/slopeaspect_deg/_alt/1/_compass/value,
168
maxSlopeAspect,/location/slopeaspect_deg/_alt/2/_avg/max,
169
minSlopeAspect,/location/slopeaspect_deg/_alt/2/_avg/min,
170
slopeGradient,/location/slopegradient_frac/_alt/1,
171
maxSlopeGradient,/location/slopegradient_frac/_alt/2/_avg/max,
172
minSlopeGradient,/location/slopegradient_frac/_alt/2/_avg/min,
173
subplotID,/location/sourceaccessioncode,
174
subplotX,/location/sublocationxposition_m,
175
subplotY,/location/sublocationyposition_m,
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