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1
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VegCore,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
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2
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subplotID,"/location/_if[@name=""if subplot""]/cond/1",
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3
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subplot,"/location/_if[@name=""if subplot""]/cond/2",
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4
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plotName,"/location/_if[@name=""if subplot""]/else/authorlocationcode",
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5
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locationID,"/location/authorlocationcode/_if[@name=""if locationID""]/cond/_exists",
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6
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fieldNumber,"/location/authorlocationcode/_if[@name=""if locationID""]/else",
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7
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occurrenceID,"/location/_if[@name=""if subplot""]/else/authorlocationcode",
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8
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institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode",
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9
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collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode",
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10
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collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode",
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11
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voucherType,"/location/authorlocationcode/_if[@name=""if indirect voucher""]/cond",
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12
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catalogNumber,"/location/authorlocationcode/_if[@name=""if indirect voucher""]/else",
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13
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locationID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode",
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14
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plotName,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode",
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15
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locationID,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode",
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16
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plotArea_m2,//location/area_m2,
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17
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plotArea_ha,//location/area_m2/_ha_to_m2/value,
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18
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subplot,//location/authorlocationcode,
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19
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elevationInMeters,//location/elevation_m,
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20
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verbatimElevation,//location/elevation_m,
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21
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verbatimElevation_m,//location/elevation_m,
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22
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maximumElevationInMeters,//location/elevation_m,
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23
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verbatimElevation_m,//location/elevation_m,
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24
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minimumElevationInMeters,//location/elevation_m,
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25
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verbatimElevation_m,//location/elevationrange_m,
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26
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minimumElevationInMeters,//location/elevationrange_m,
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27
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verbatimElevation_m,//location/elevationrange_m,
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28
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maximumElevationInMeters,//location/elevationrange_m,
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29
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minimumElevationInMeters,//location/elevationrange_m,
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30
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landform,//location/landform,
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31
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coordinateUncertaintyInMeters,//locationcoords/coordsaccuracy_deg,
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32
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coordinatePrecision,//locationcoords/coordsaccuracy_deg,
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33
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footprintWKT,//locationcoords/footprintgeometry_dwc,
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34
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decimalLatitude,//locationcoords/latitude_deg,
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35
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verbatimLatitude,//locationcoords/latitude_deg,
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36
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decimalLongitude,//locationcoords/longitude_deg,
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37
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verbatimLongitude,//locationcoords/longitude_deg,
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38
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samplingProtocol,//method/name,
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39
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projectName,//project/projectname,
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40
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projectID,//project/sourceaccessioncode,
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41
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subplotID,"//location/locationevent/_if[@name=""if subplot""]/cond/1",
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42
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subplot,"//location/locationevent/_if[@name=""if subplot""]/cond/2",
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43
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fieldNumber,"//location/locationevent/_if[@name=""if subplot""]/else/authoreventcode",
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44
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eventID,"//location/locationevent/_if[@name=""if subplot""]/else/sourceaccessioncode",
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45
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eventID,"//location/locationevent/_if[@name=""if event""]/cond/1",
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46
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fieldNumber,"//location/locationevent/_if[@name=""if event""]/cond/2",
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47
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plotName,"//location/locationevent/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/authorlocationcode",
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48
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locationID,"//location/locationevent/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode",
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49
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fieldNumber,"//location/locationevent/_if[@name=""if event""]/then/parent_id/locationevent/authorlocationcode",
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50
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eventID,"//location/locationevent/_if[@name=""if event""]/then/parent_id/locationevent/sourceaccessioncode",
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51
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communityID,//*/commname,
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52
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communityName,//commconcept/commdescription,
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53
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endDate,//locationevent/obsenddate/_*/date,
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54
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eventDate,//locationevent/obsenddate/_*/date,
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55
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startDate,//locationevent/obsstartdate/_*/date,
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56
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eventDate,//locationevent/obsstartdate/_*/date,
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57
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precipitation,//locationevent/precipitation_m,
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58
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acidity,//soilobs/acidity_fraction,
|
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59
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baseSaturation,//soilobs/basesaturation_fraction,
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60
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calcium,//soilobs/calcium_fraction,
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61
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carbon,//soilobs/carbon_fraction,
|
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62
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cationExchangeCapacity,//soilobs/cationexchangecapacity_cmol_kg,
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63
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clay,//soilobs/clay_fraction,
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64
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conductivity,//soilobs/conductivity,
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65
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magnesium,//soilobs/magnesium_fraction,
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66
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nitrogen,//soilobs/nitrogen_fraction,
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67
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organic,//soilobs/organic_fraction,
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68
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ph,//soilobs/ph,
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69
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phosphorus,//soilobs/phosphorus_fraction,
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70
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potassium,//soilobs/potassium_fraction,
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71
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sand,//soilobs/sand_fraction,
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72
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silt,//soilobs/silt_fraction,
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73
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sodium,//soilobs/sodium_fraction,
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74
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texture,//soilobs/texture,
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75
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dateCollected,//aggregateoccurrence/collectiondate/_*/date,
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76
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dayCollected,//aggregateoccurrence/collectiondate,
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77
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monthCollected,//aggregateoccurrence/collectiondate,
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78
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yearCollected,//aggregateoccurrence/collectiondate,
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79
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individualCount,//aggregateoccurrence/count,
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80
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coverPercent,//aggregateoccurrence/cover_fraction/_percent_to_fraction/value,
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81
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censusNumber,"//aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]/definedvalue",
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82
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intercept_m,//aggregateoccurrence/linecover_m,
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83
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intercept_cm,//aggregateoccurrence/linecover_m/_cm_to_m/value,
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84
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fieldNotes,//aggregateoccurrence/notes,
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85
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recordNumber,//plantobservation/collectionnumber,
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86
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sex,"//plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections"
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87
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individualID,//plantobservation/sourceaccessioncode,
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88
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voucherType,"//specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond",
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89
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catalogNumber,"//specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
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90
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collectionCode,//specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
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91
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collectionID,//specimenreplicate/collectioncode_dwc,
|
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92
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institutionCode,//party/organizationname,
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93
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occurrenceID,//specimenreplicate/sourceaccessioncode,
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94
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stemCount,//plantobservation/stemcount,
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95
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authorStemCode,//stemobservation/authorstemcode,
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96
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basalDiameter,//stemobservation/basaldiameter_m,
|
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97
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canopyForm,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]/definedvalue",
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98
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canopyPosition,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]/definedvalue",
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99
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diameterBreastHeightGentry,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]/definedvalue",
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100
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lianaInfestation,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]/definedvalue",
|
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101
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stemNotes,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]/definedvalue",
|
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102
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diameterBreastHeight,//stemobservation/diameterbreastheight_m,
|
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103
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height,//stemobservation/height_m,
|
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104
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heightFirstBranch,//stemobservation/heightfirstbranch_m,
|
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105
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stemID,//stemobservation/sourceaccessioncode,
|
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106
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tag,"//stemobservation/stemtag[""""/iscurrent=true]/tag",Quotes sort it before tag2
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107
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previousTag,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag:[../stemtag?[iscurrent=true]/iscurrent=false]/tag,
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108
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organismX,//stemobservation/xposition_m,
|
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109
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organismY,//stemobservation/yposition_m,
|
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110
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recordNumber,//taxonoccurrence/authortaxoncode,
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111
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verbatimScientificName,//taxonoccurrence/authortaxoncode,
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112
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scientificNameWithAuthorship,//taxonoccurrence/authortaxoncode,
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113
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scientificName,//taxonoccurrence/authortaxoncode,
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114
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growthForm,//taxonoccurrence/growthform,
|
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115
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verbatimGrowthForm,//taxonoccurrence/growthform,"According to <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.habit>, <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/SALVIAS#Habit>"
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116
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cultivated,//taxonoccurrence/iscultivated,
|
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117
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establishmentMeans,//taxonoccurrence/iscultivated,
|
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118
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establishmentMeans,//taxonoccurrence/isnative,
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119
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taxonOccurrenceID,//taxonoccurrence/sourceaccessioncode,
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120
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individualID,//taxonoccurrence/sourceaccessioncode,
|
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121
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identifiedBy,//taxonoccurrence/taxondetermination[]/*_id/party/givenname,
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122
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identifiedBy,//taxonoccurrence/taxondetermination[]/*_id/party/middlename,
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123
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identifiedBy,//taxonoccurrence/taxondetermination[]/*_id/party/surname,
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124
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class,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/class,
|
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125
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cultivar,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/cultivar,
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126
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family,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/family,
|
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127
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forma,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/forma,
|
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128
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genus,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/genus,
|
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129
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kingdom,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/kingdom,
|
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130
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order,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/order,
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131
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phylum,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/phylum,
|
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132
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scientificName,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/scientificname,
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133
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scientificNameAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/scientificnameauthor,
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134
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scientificNameWithAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/scientificnamewithauthor,
|
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135
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specificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/species,
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136
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subspecies,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/subspecies,
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137
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taxonRank,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/subspecies,
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138
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infraspecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/subspecies,
|
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139
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variety,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/variety,
|
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140
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dateIdentified,//taxonoccurrence/taxondetermination[]/determinationdate/_*/date,
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141
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dayIdentified,//taxonoccurrence/taxondetermination[]/determinationdate,
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142
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monthIdentified,//taxonoccurrence/taxondetermination[]/determinationdate,
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143
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yearIdentified,//taxonoccurrence/taxondetermination[]/determinationdate,
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144
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taxonRemarks,//taxonoccurrence/taxondetermination[]/notes,
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145
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identificationQualifier,//taxonoccurrence/taxondetermination[]/taxonfit,
|
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146
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verbatimClass,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/class,
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147
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verbatimFamily,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/family,
|
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148
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verbatimGenus,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/genus,
|
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149
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verbatimKingdom,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/kingdom,
|
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150
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verbatimOrder,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/order,
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151
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verbatimPhylum,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/phylum,
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152
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verbatimScientificName,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/scientificname,
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153
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verbatimScientificNameAuthorship,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/scientificnameauthor,
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154
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verbatimSpecificEpithet,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/species,
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155
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verbatimInfraspecificEpithet,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/subspecies,
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156
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verbatimIdentificationQualifier,//taxonoccurrence/taxondetermination[isoriginal=true]/taxonfit,
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157
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recordedBy,//taxonoccurrence/verbatimcollectorname,
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158
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recordedBy.givenName,//taxonoccurrence/verbatimcollectorname,
|
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159
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recordedBy.surName,//taxonoccurrence/verbatimcollectorname,
|
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160
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voucherType,"//specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond",
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161
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catalogNumber,"//specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
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162
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temperature,//locationevent/temperature_c,
|
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163
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maximumDepthInMeters,//locationevent/waterdepth_m,
|
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164
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minimumDepthInMeters,//locationevent/waterdepth_m,
|
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165
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locality,//location/locationnarrative,
|
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166
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verbatimLocality,//location/locationnarrative,
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167
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habitat,"//location/locationnarrative/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
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168
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continent,//placepath/continent,
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169
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country,//placepath/country,
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170
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county,//placepath/county,
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171
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stateProvince,//placepath/stateprovince,
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172
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plotNotes,//location/notespublic,
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173
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slopeAspect,//location/slopeaspect_deg,
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174
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maxSlopeAspect,//location/slopeaspect_deg,
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175
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minSlopeAspect,//location/slopeaspect_deg,
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176
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slopeGradient,//location/slopegradient_fraction,
|
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177
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maxSlopeGradient,//location/slopegradient_fraction,
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178
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minSlopeGradient,//location/slopegradient_fraction,
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179
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subplotID,//location/sourceaccessioncode,
|
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180
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subplotX,//location/sublocationxposition_m,
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181
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subplotY,//location/sublocationyposition_m,
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182
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verbatimElevation_m,//location/verbatimelevation,
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