Project

General

Profile

1 4651 aaronmk
SALVIAS-CSV,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
2 4336 aaronmk
plot_code,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
3
PLOT_ID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
4 4324 aaronmk
PLOT_ID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
5
plot_code,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
6
PLOT_ID,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
7 4767 aaronmk
plot_area_ha,/location/area_m2/_ha_to_m2/value,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
8 4809 aaronmk
elev_m,/location/elevation_m/_alt/1,Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick.
9 4820 aaronmk
elev_max_m,/location/elevation_m/_alt/2/_avg/max,
10 4822 aaronmk
elev_min_m,/location/elevation_m/_alt/2/_avg/min,
11 4753 aaronmk
lat_decimal,"/location/locationcoords/latitude_deg/_alt/1/_nullIf:[null=0,type=float]/value",
12
long_decimal,"/location/locationcoords/longitude_deg/_alt/1/_nullIf:[null=0,type=float]/value",
13 3968 aaronmk
plot_methodology,/location/locationevent/*_id/method/name,
14
project,/location/locationevent/*_id/project/projectname,
15 4458 aaronmk
plot_code,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/authorlocationcode",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
16
PLOT_ID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
17 3968 aaronmk
holdridge_life_zone,/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname,
18
life_zone_code,/location/locationevent/commclass/commdetermination/*_id/commconcept/commdescription,
19 4563 aaronmk
date_finish,/location/locationevent/obsenddate/_*/date/_alt/1,
20
date_start,/location/locationevent/obsstartdate/_*/date/_alt/1,
21 4753 aaronmk
precip_mm,/location/locationevent/precipitation_m,
22 4786 aaronmk
soil_acidity,"/location/locationevent/soilobs/acidity_fraction/_units:[default=""%"",to=]/value/_map:[""<0.05""=0,*=*]/value",
23
soil_base,"/location/locationevent/soilobs/basesaturation_fraction/_units:[default=""%"",to=]/value",
24
soil_Ca,"/location/locationevent/soilobs/calcium_fraction/_units:[default=""%"",to=]/value",
25
soil_C,"/location/locationevent/soilobs/carbon_fraction/_units:[default=""%"",to=]/value",
26 4754 aaronmk
soil_cation_cap,/location/locationevent/soilobs/cationexchangecapacity_cmol_kg,
27 4786 aaronmk
clay_percent,"/location/locationevent/soilobs/clay_fraction/_units:[default=""%"",to=]/value",
28 3968 aaronmk
soil_conductivity,/location/locationevent/soilobs/conductivity,
29 4786 aaronmk
soil_Mg,"/location/locationevent/soilobs/magnesium_fraction/_units:[default=""%"",to=]/value",
30
soil_N,"/location/locationevent/soilobs/nitrogen_fraction/_units:[default=""%"",to=]/value",
31
organic_percent,"/location/locationevent/soilobs/organic_fraction/_units:[default=""%"",to=]/value",
32 3968 aaronmk
pH,/location/locationevent/soilobs/ph,"Brad: For all these soil variables, how do we store information on method, units. Seems like an ontological structure would be more appropriate (measurementName, measurementValue, measurementUnits, measurementMethod). Same as BIEN traits table. Something to discuss."
33 4786 aaronmk
soil_P,"/location/locationevent/soilobs/phosphorus_fraction/_units:[default=""%"",to=]/value/_map:[""<1,5""=0,*=*]/value",
34
soil_K,"/location/locationevent/soilobs/potassium_fraction/_units:[default=""%"",to=]/value",
35
sand_percent,"/location/locationevent/soilobs/sand_fraction/_units:[default=""%"",to=]/value",
36
silt_percent,"/location/locationevent/soilobs/silt_fraction/_units:[default=""%"",to=]/value",
37
soil_Na,"/location/locationevent/soilobs/sodium_fraction/_units:[default=""%"",to=]/value",
38 3968 aaronmk
soil_texture,/location/locationevent/soilobs/texture,
39 4753 aaronmk
temp_c,/location/locationevent/temperature_c,
40 3983 aaronmk
locality_description,/location/locationnarrative/_merge/1,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"
41 4727 aaronmk
major_geo,/location/locationplace/*_id/placepath/continent,
42
country,/location/locationplace/*_id/placepath/country,
43
pol2,/location/locationplace/*_id/placepath/county,Brad: No pol2=countyParish
44
pol1,/location/locationplace/*_id/placepath/stateprovince,Brad: No; pol1=stateProvince
45 4753 aaronmk
slope_aspect,/location/slopeaspect_deg/_alt/1/_compass/value,
46 4786 aaronmk
slope_gradient,/location/slopegradient_fraction/_alt/1,
47 4638 aaronmk
observation_type,,"** No join mapping for observation_type ** Brad: SALVIAS internal metadata indicating whether the record represents an individual or aggregate observation. Rather than storing, use to decide where to store in VegX.; Aaron: VegX aggregateOrganismObservation table is missing many fields available in individualOrganismObservation, so we're mapping to individualOrganismObservation regardless of observation type"
48
recensused,,"** No join mapping for recensused ** Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a  plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values"