Revision 4844
Added by Aaron Marcuse-Kubitza about 12 years ago
| inputs/XAL/Specimen/map.csv | ||
|---|---|---|
| 4 | 4 |
darwin:CollectionCode,collectionCode,, |
| 5 | 5 |
darwin:CatalogNumber,catalogNumber,, |
| 6 | 6 |
darwin:ScientificName,scientificName,, |
| 7 |
darwin:BasisOfRecord,BasisOfRecord,,
|
|
| 7 |
darwin:BasisOfRecord,basisOfRecord,,
|
|
| 8 | 8 |
darwin:Kingdom,kingdom,, |
| 9 | 9 |
darwin:Phylum,phylum,, |
| 10 | 10 |
darwin:Class,class,, |
| ... | ... | |
| 18 | 18 |
darwin:YearIdentified,yearIdentified,, |
| 19 | 19 |
darwin:MonthIdentified,monthIdentified,, |
| 20 | 20 |
darwin:DayIdentified,dayIdentified,, |
| 21 |
darwin:TypeStatus,TypeStatus,,
|
|
| 21 |
darwin:TypeStatus,typeStatus,,
|
|
| 22 | 22 |
darwin:CollectorNumber,recordNumber,, |
| 23 | 23 |
darwin:FieldNumber,UNUSED,,"`grep -F ""<darwin:FieldNumber>"" inputs/XAL/src/digir.specimens.xml` returns no lines. This historical DwC term (http://rs.tdwg.org/dwc/terms/history/index.htm#fieldNumber-2009-04-24) has close to the same meaning as recordNumber (http://rs.tdwg.org/dwc/terms/#recordNumber)." |
| 24 | 24 |
darwin:Collector,recordedBy,, |
| inputs/XAL/Specimen/VegBIEN.csv | ||
|---|---|---|
| 44 | 44 |
darwin:Country,/location/locationplace/*_id/placepath/country, |
| 45 | 45 |
darwin:County,/location/locationplace/*_id/placepath/county, |
| 46 | 46 |
darwin:StateProvince,/location/locationplace/*_id/placepath/stateprovince, |
| 47 |
darwin:BasisOfRecord,,** No join mapping for BasisOfRecord **
|
|
| 47 |
darwin:BasisOfRecord,,** No join mapping for basisOfRecord **
|
|
| 48 | 48 |
darwin:DateLastModified,,** No join mapping for dcterms:modified ** |
| 49 | 49 |
darwin:FieldNumber,,"** No join mapping for UNUSED ** `grep -F ""<darwin:FieldNumber>"" inputs/XAL/src/digir.specimens.xml` returns no lines. This historical DwC term (http://rs.tdwg.org/dwc/terms/history/index.htm#fieldNumber-2009-04-24) has close to the same meaning as recordNumber (http://rs.tdwg.org/dwc/terms/#recordNumber)." |
| 50 | 50 |
darwin:JulianDay,,** No join mapping for day ** |
| ... | ... | |
| 53 | 53 |
darwin:RelatedCatalogItem,,** No join mapping for relatedResourceID ** |
| 54 | 54 |
darwin:RelationshipType,,** No join mapping for relationshipOfResource ** |
| 55 | 55 |
darwin:TimeOfDay,,** No join mapping for eventTime ** |
| 56 |
darwin:TypeStatus,,** No join mapping for TypeStatus ** |
|
| 56 |
darwin:TypeStatus,,** No join mapping for typeStatus ** |
|
| inputs/XAL/Specimen/unmapped_terms.csv | ||
|---|---|---|
| 1 | 1 |
dcterms:modified |
| 2 |
BasisOfRecord
|
|
| 3 |
TypeStatus
|
|
| 2 |
basisOfRecord
|
|
| 3 |
typeStatus
|
|
| 4 | 4 |
UNUSED |
| 5 | 5 |
day |
| 6 | 6 |
eventTime |
| inputs/NY/Specimen/map.csv | ||
|---|---|---|
| 5 | 5 |
CollectionCode,collectionCode,, |
| 6 | 6 |
CatalogNumber,catalogNumber,, |
| 7 | 7 |
ScientificName,scientificName,, |
| 8 |
BasisOfRecord,BasisOfRecord,,
|
|
| 8 |
BasisOfRecord,basisOfRecord,,
|
|
| 9 | 9 |
Kingdom,kingdom,, |
| 10 | 10 |
Phylum,phylum,, |
| 11 | 11 |
Class,class,, |
| ... | ... | |
| 19 | 19 |
YearIdentified,yearIdentified,, |
| 20 | 20 |
MonthIdentified,monthIdentified,, |
| 21 | 21 |
DayIdentified,dayIdentified,, |
| 22 |
TypeStatus,TypeStatus,,
|
|
| 22 |
TypeStatus,typeStatus,,
|
|
| 23 | 23 |
CollectorNumber,UNUSED,, |
| 24 | 24 |
FieldNumber,recordNumber,,Usage inconsistent with DwC definition |
| 25 | 25 |
Collector,recordedBy,, |
| inputs/NY/Specimen/VegBIEN.csv | ||
|---|---|---|
| 52 | 52 |
Country,/location/locationplace/*_id/placepath/country, |
| 53 | 53 |
County,/location/locationplace/*_id/placepath/county, |
| 54 | 54 |
StateProvince,/location/locationplace/*_id/placepath/stateprovince, |
| 55 |
BasisOfRecord,,** No join mapping for BasisOfRecord **
|
|
| 55 |
BasisOfRecord,,** No join mapping for basisOfRecord **
|
|
| 56 | 56 |
CollectorNumber,,** No join mapping for UNUSED ** |
| 57 | 57 |
DateLastModified,,** No join mapping for dcterms:modified ** |
| 58 | 58 |
JulianDay,,** No join mapping for day ** |
| ... | ... | |
| 61 | 61 |
RelatedCatalogItem,,** No join mapping for relatedResourceID ** |
| 62 | 62 |
RelationshipType,,** No join mapping for relationshipOfResource ** |
| 63 | 63 |
TimeOfDay,,** No join mapping for eventTime ** |
| 64 |
TypeStatus,,** No join mapping for TypeStatus **
|
|
| 64 |
TypeStatus,,** No join mapping for typeStatus **
|
|
| 65 | 65 |
key,,** No join mapping for OMIT ** UniqueNYInternalRecordNumber is a better pkey |
| inputs/NY/Specimen/unmapped_terms.csv | ||
|---|---|---|
| 1 | 1 |
OMIT |
| 2 | 2 |
dcterms:modified |
| 3 |
BasisOfRecord
|
|
| 4 |
TypeStatus
|
|
| 3 |
basisOfRecord
|
|
| 4 |
typeStatus
|
|
| 5 | 5 |
UNUSED |
| 6 | 6 |
day |
| 7 | 7 |
eventTime |
| inputs/U/Specimen/map.csv | ||
|---|---|---|
| 28 | 28 |
Alt,Alt,,What is this? |
| 29 | 29 |
Alt2,Alt2,,What is this? |
| 30 | 30 |
Ecology,habitat,, |
| 31 |
Phenology,ReproductiveCondition,,
|
|
| 31 |
Phenology,reproductiveCondition,,
|
|
| 32 | 32 |
Notes,fieldNotes,, |
| inputs/U/Specimen/VegBIEN.csv | ||
|---|---|---|
| 34 | 34 |
EW,,** No join mapping for EW ** |
| 35 | 35 |
Majorarea,,** No join mapping for Majorarea ** |
| 36 | 36 |
NS,,** No join mapping for NS ** |
| 37 |
Phenology,,** No join mapping for ReproductiveCondition **
|
|
| 37 |
Phenology,,** No join mapping for reproductiveCondition **
|
|
| 38 | 38 |
Prefix,,** No join mapping for UNUSED ** |
| 39 | 39 |
Suffix,,** No join mapping for UNUSED ** |
| inputs/U/Specimen/unmapped_terms.csv | ||
|---|---|---|
| 7 | 7 |
EW |
| 8 | 8 |
Alt |
| 9 | 9 |
Alt2 |
| 10 |
ReproductiveCondition |
|
| 10 |
reproductiveCondition |
|
| inputs/ARIZ/Specimen/map.csv | ||
|---|---|---|
| 1 | 1 |
ARIZ,VegCore,Filter,Comments |
| 2 | 2 |
GlobalUniqueIdentifier,occurrenceID,, |
| 3 | 3 |
DateLastModified,dcterms:modified,, |
| 4 |
BasisOfRecord,BasisOfRecord,,
|
|
| 4 |
BasisOfRecord,basisOfRecord,,
|
|
| 5 | 5 |
InstitutionCode,institutionCode,, |
| 6 | 6 |
CollectionCode,collectionCode,, |
| 7 | 7 |
CatalogNumber,catalogNumber,/_alt/2,Don't overwrite CatalogNumberNumeric |
| ... | ... | |
| 18 | 18 |
VerbatimCollectingDate,dateCollected,/_alt/0, |
| 19 | 19 |
FieldNotes,fieldNotes,, |
| 20 | 20 |
JulianDay,day,, |
| 21 |
HigherGeography,HigherGeography,,
|
|
| 21 |
HigherGeography,higherGeography,,
|
|
| 22 | 22 |
ContinentOcean,continent,, |
| 23 |
IslandGroup,IslandGroup,,
|
|
| 24 |
Island,Island,,
|
|
| 23 |
IslandGroup,islandGroup,,
|
|
| 24 |
Island,island,,
|
|
| 25 | 25 |
Country,country,, |
| 26 | 26 |
StateProvince,stateProvince,, |
| 27 | 27 |
County,county,, |
| ... | ... | |
| 41 | 41 |
VerbatimElevation,UNUSED,, |
| 42 | 42 |
MinimumDepthInMeters,minimumDepthInMeters,, |
| 43 | 43 |
MaximumDepthInMeters,maximumDepthInMeters,, |
| 44 |
VerbatimDepth,VerbatimDepth,,
|
|
| 44 |
VerbatimDepth,verbatimDepth,,
|
|
| 45 | 45 |
ScientificName,scientificName,/_alt/2, |
| 46 | 46 |
Kingdom,kingdom,, |
| 47 | 47 |
Phylum,phylum,, |
| ... | ... | |
| 57 | 57 |
YearIdentified,yearIdentified,, |
| 58 | 58 |
MonthIdentified,monthIdentified,, |
| 59 | 59 |
DayIdentified,dayIdentified,, |
| 60 |
TypeStatus,TypeStatus,,
|
|
| 60 |
TypeStatus,typeStatus,,
|
|
| 61 | 61 |
Sex,sex,, |
| 62 |
Preparations,Preparations,,
|
|
| 62 |
Preparations,preparations,,
|
|
| 63 | 63 |
Tissues,UNUSED,, |
| 64 | 64 |
IndividualCount,individualCount,, |
| 65 | 65 |
AgeClass,lifeStage,, |
| inputs/ARIZ/Specimen/VegBIEN.csv | ||
|---|---|---|
| 58 | 58 |
County,/location/locationplace/*_id/placepath/county, |
| 59 | 59 |
StateProvince,/location/locationplace/*_id/placepath/stateprovince, |
| 60 | 60 |
AgeClass,,** No join mapping for lifeStage ** |
| 61 |
BasisOfRecord,,** No join mapping for BasisOfRecord **
|
|
| 61 |
BasisOfRecord,,** No join mapping for basisOfRecord **
|
|
| 62 | 62 |
DateLastModified,,** No join mapping for dcterms:modified ** |
| 63 | 63 |
FieldNumber,,"** No join mapping for OMIT ** Usage inconsistent with DwC definition: meaning is recordNumber. Identical to CollectorNumber [1], so does not need to be mapped. |
| 64 | 64 |
|
| 65 | 65 |
[1] The following query returns no rows: SELECT * FROM ""ARIZ"".""Specimen"" WHERE ""CollectorNumber"" IS DISTINCT FROM ""FieldNumber""" |
| 66 | 66 |
GenBankNum,,"** No join mapping for associatedSequences/_label[label=""GenBank""]/value ** " |
| 67 | 67 |
GeorefMethod,,** No join mapping for georeferenceProtocol ** |
| 68 |
HigherGeography,,** No join mapping for HigherGeography **
|
|
| 68 |
HigherGeography,,** No join mapping for higherGeography **
|
|
| 69 | 69 |
HorizontalDatum,,** No join mapping for UNUSED ** |
| 70 |
Island,,** No join mapping for Island **
|
|
| 71 |
IslandGroup,,** No join mapping for IslandGroup **
|
|
| 70 |
Island,,** No join mapping for island **
|
|
| 71 |
IslandGroup,,** No join mapping for islandGroup **
|
|
| 72 | 72 |
JulianDay,,** No join mapping for day ** |
| 73 | 73 |
LatLongComments,,** No join mapping for georeferenceRemarks ** |
| 74 | 74 |
OriginalCoordinateSystem,,** No join mapping for verbatimSRS ** |
| 75 | 75 |
OtherCatalogNumbers,,** No join mapping for relatedResourceID/_alt/1 ** |
| 76 |
Preparations,,** No join mapping for Preparations **
|
|
| 76 |
Preparations,,** No join mapping for preparations **
|
|
| 77 | 77 |
RelatedCatalogedItems,,** No join mapping for relatedResourceID/_alt/2 ** Used only when OtherCatalogNumbers is NULL |
| 78 | 78 |
TimeCollected,,** No join mapping for eventTime ** |
| 79 | 79 |
Tissues,,** No join mapping for UNUSED ** |
| 80 |
TypeStatus,,** No join mapping for TypeStatus **
|
|
| 81 |
VerbatimDepth,,** No join mapping for VerbatimDepth **
|
|
| 80 |
TypeStatus,,** No join mapping for typeStatus **
|
|
| 81 |
VerbatimDepth,,** No join mapping for verbatimDepth **
|
|
| 82 | 82 |
VerbatimElevation,,** No join mapping for UNUSED ** |
| inputs/ARIZ/Specimen/new_terms.csv | ||
|---|---|---|
| 9 | 9 |
Tissues |
| 10 | 10 |
AgeClass |
| 11 | 11 |
GenBankNum |
| 12 |
OtherCatalogNumbers |
|
| 13 | 12 |
RelatedCatalogedItems |
| inputs/ARIZ/Specimen/unmapped_terms.csv | ||
|---|---|---|
| 1 | 1 |
dcterms:modified |
| 2 |
BasisOfRecord
|
|
| 2 |
basisOfRecord
|
|
| 3 | 3 |
OMIT |
| 4 | 4 |
eventTime |
| 5 | 5 |
day |
| 6 |
HigherGeography
|
|
| 7 |
IslandGroup
|
|
| 8 |
Island
|
|
| 6 |
higherGeography
|
|
| 7 |
islandGroup
|
|
| 8 |
island
|
|
| 9 | 9 |
UNUSED |
| 10 | 10 |
verbatimSRS |
| 11 | 11 |
georeferenceProtocol |
| 12 | 12 |
georeferenceRemarks |
| 13 | 13 |
UNUSED |
| 14 |
VerbatimDepth
|
|
| 15 |
TypeStatus
|
|
| 16 |
Preparations
|
|
| 14 |
verbatimDepth
|
|
| 15 |
typeStatus
|
|
| 16 |
preparations
|
|
| 17 | 17 |
UNUSED |
| 18 | 18 |
lifeStage |
| 19 | 19 |
associatedSequences |
| inputs/SpeciesLink/Specimen/map.csv | ||
|---|---|---|
| 1 | 1 |
SpeciesLink,VegCore,Filter,Comments |
| 2 | 2 |
dwc_dwcore_GlobalUniqueIdentifier,occurrenceID,, |
| 3 | 3 |
dwc_dwcore_DateLastModified,dcterms:modified,, |
| 4 |
dwc_dwcore_BasisOfRecord,BasisOfRecord,,
|
|
| 4 |
dwc_dwcore_BasisOfRecord,basisOfRecord,,
|
|
| 5 | 5 |
dwc_dwcore_InstitutionCode,institutionCode,, |
| 6 | 6 |
dwc_dwcore_CollectionCode,collectionCode,, |
| 7 | 7 |
dwc_dwcore_CatalogNumber,catalogNumber,, |
| ... | ... | |
| 35 | 35 |
SELECT count(*) FROM ""SpeciesLink"".specimens |
| 36 | 36 |
WHERE COALESCE(""dwc_curatorial_FieldNumber"", ""dwc_terms_fieldNumber"", ""conceptual_darwin_2003_1_0_FieldNumber"") != ""dwc_terms_recordNumber""
|
| 37 | 37 |
-----" |
| 38 |
dwc_curatorial_TypeStatus,TypeStatus,,
|
|
| 38 |
dwc_curatorial_TypeStatus,typeStatus,,
|
|
| 39 | 39 |
dwc_curatorial_IndividualCount,individualCount,, |
| 40 | 40 |
dwc_geospatial_DecimalLatitude,decimalLatitude,, |
| 41 | 41 |
dwc_geospatial_DecimalLongitude,decimalLongitude,, |
| ... | ... | |
| 97 | 97 |
conceptual_darwin_2003_1_0_CollectionCode,collectionCode,, |
| 98 | 98 |
conceptual_darwin_2003_1_0_CatalogNumber,catalogNumber,, |
| 99 | 99 |
conceptual_darwin_2003_1_0_ScientificName,scientificName,, |
| 100 |
conceptual_darwin_2003_1_0_BasisOfRecord,BasisOfRecord,,
|
|
| 100 |
conceptual_darwin_2003_1_0_BasisOfRecord,basisOfRecord,,
|
|
| 101 | 101 |
conceptual_darwin_2003_1_0_Kingdom,kingdom,, |
| 102 | 102 |
conceptual_darwin_2003_1_0_Phylum,phylum,, |
| 103 | 103 |
conceptual_darwin_2003_1_0_Class,class,, |
| ... | ... | |
| 111 | 111 |
conceptual_darwin_2003_1_0_YearIdentified,yearIdentified,, |
| 112 | 112 |
conceptual_darwin_2003_1_0_MonthIdentified,monthIdentified,, |
| 113 | 113 |
conceptual_darwin_2003_1_0_DayIdentified,dayIdentified,, |
| 114 |
conceptual_darwin_2003_1_0_TypeStatus,TypeStatus,,
|
|
| 114 |
conceptual_darwin_2003_1_0_TypeStatus,typeStatus,,
|
|
| 115 | 115 |
conceptual_darwin_2003_1_0_CollectorNumber,recordNumber,/_alt/3, |
| 116 | 116 |
conceptual_darwin_2003_1_0_FieldNumber,recordNumber,/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec) |
| 117 | 117 |
----- |
| inputs/SpeciesLink/Specimen/VegBIEN.csv | ||
|---|---|---|
| 161 | 161 |
conceptual_darwin_2003_1_0_StateProvince,/location/locationplace/*_id/placepath/stateprovince, |
| 162 | 162 |
dwc_dwcore_StateProvince,/location/locationplace/*_id/placepath/stateprovince, |
| 163 | 163 |
dwc_terms_stateProvince,/location/locationplace/*_id/placepath/stateprovince, |
| 164 |
conceptual_darwin_2003_1_0_BasisOfRecord,,** No join mapping for BasisOfRecord **
|
|
| 164 |
conceptual_darwin_2003_1_0_BasisOfRecord,,** No join mapping for basisOfRecord **
|
|
| 165 | 165 |
conceptual_darwin_2003_1_0_DateLastModified,,** No join mapping for dcterms:modified ** |
| 166 | 166 |
conceptual_darwin_2003_1_0_JulianDay,,** No join mapping for day/_alt/1 ** |
| 167 | 167 |
conceptual_darwin_2003_1_0_PreparationType,,** No join mapping for preparations ** |
| ... | ... | |
| 169 | 169 |
conceptual_darwin_2003_1_0_RelatedCatalogItem,,** No join mapping for relatedResourceID ** |
| 170 | 170 |
conceptual_darwin_2003_1_0_RelationshipType,,** No join mapping for relationshipOfResource ** |
| 171 | 171 |
conceptual_darwin_2003_1_0_TimeOfDay,,** No join mapping for eventTime ** |
| 172 |
conceptual_darwin_2003_1_0_TypeStatus,,** No join mapping for TypeStatus **
|
|
| 173 |
dwc_curatorial_TypeStatus,,** No join mapping for TypeStatus **
|
|
| 174 |
dwc_dwcore_BasisOfRecord,,** No join mapping for BasisOfRecord **
|
|
| 172 |
conceptual_darwin_2003_1_0_TypeStatus,,** No join mapping for typeStatus **
|
|
| 173 |
dwc_curatorial_TypeStatus,,** No join mapping for typeStatus **
|
|
| 174 |
dwc_dwcore_BasisOfRecord,,** No join mapping for basisOfRecord **
|
|
| 175 | 175 |
dwc_dwcore_DateLastModified,,** No join mapping for dcterms:modified ** |
| 176 | 176 |
dwc_dwcore_DayOfYear,,** No join mapping for day/_alt/2 ** |
| 177 | 177 |
dwc_terms_basisOfRecord,,** No join mapping for basisOfRecord ** |
| inputs/SpeciesLink/Specimen/unmapped_terms.csv | ||
|---|---|---|
| 1 | 1 |
dcterms:modified |
| 2 |
BasisOfRecord
|
|
| 2 |
basisOfRecord
|
|
| 3 | 3 |
day |
| 4 |
TypeStatus
|
|
| 4 |
typeStatus
|
|
| 5 | 5 |
dcterms:modified |
| 6 | 6 |
basisOfRecord |
| 7 | 7 |
typeStatus |
| ... | ... | |
| 15 | 15 |
month |
| 16 | 16 |
day |
| 17 | 17 |
dcterms:modified |
| 18 |
BasisOfRecord
|
|
| 19 |
TypeStatus
|
|
| 18 |
basisOfRecord
|
|
| 19 |
typeStatus
|
|
| 20 | 20 |
day |
| 21 | 21 |
eventTime |
| 22 | 22 |
preparations |
| inputs/MO/Specimen/map.csv | ||
|---|---|---|
| 4 | 4 |
InstitutionCode,institutionCode,, |
| 5 | 5 |
CollectionCode,collectionCode,, |
| 6 | 6 |
ScientificName,scientificName,, |
| 7 |
BasisOfRecord,BasisOfRecord,,
|
|
| 7 |
BasisOfRecord,basisOfRecord,,
|
|
| 8 | 8 |
Kingdom,kingdom,, |
| 9 | 9 |
family,family,, |
| 10 | 10 |
genus,genus,, |
| ... | ... | |
| 12 | 12 |
Subspecies,subspecies,, |
| 13 | 13 |
ScientificNameAuthor,scientificNameAuthorship,, |
| 14 | 14 |
IdentifiedBy,identifiedBy,, |
| 15 |
TypeStatus,TypeStatus,,
|
|
| 15 |
TypeStatus,typeStatus,,
|
|
| 16 | 16 |
CollectorNumber,recordNumber,, |
| 17 | 17 |
Collector,recordedBy,, |
| 18 | 18 |
DayCollected,dayCollected,, |
| inputs/MO/Specimen/VegBIEN.csv | ||
|---|---|---|
| 35 | 35 |
Country,/location/locationplace/*_id/placepath/country, |
| 36 | 36 |
County,/location/locationplace/*_id/placepath/county, |
| 37 | 37 |
StateProvince,/location/locationplace/*_id/placepath/stateprovince, |
| 38 |
BasisOfRecord,,** No join mapping for BasisOfRecord **
|
|
| 38 |
BasisOfRecord,,** No join mapping for basisOfRecord **
|
|
| 39 | 39 |
DateLastModified,,** No join mapping for dcterms:modified ** |
| 40 |
TypeStatus,,** No join mapping for TypeStatus ** |
|
| 40 |
TypeStatus,,** No join mapping for typeStatus ** |
|
| inputs/input.Makefile | ||
|---|---|---|
| 137 | 137 |
anyTest = $*/test.% |
| 138 | 138 |
srcsOnly = $(filter-out $(anyMap) $(anyTest) %/logs,$(call dataOnly,$(1))) |
| 139 | 139 |
|
| 140 |
vocab := $(mappings)/VegCore.csv |
|
| 140 | 141 |
coreMap := $(mappings)/VegCore-VegBIEN.csv |
| 141 | 142 |
dict := $(mappings)/Veg+-VegCore.csv |
| 142 | 143 |
|
| ... | ... | |
| 251 | 252 |
|
| 252 | 253 |
# Via maps cleanup |
| 253 | 254 |
ifneq ($(filter %/.map.csv.last_cleanup,$(MAKECMDGOALS)),) |
| 254 |
%/.map.csv.last_cleanup: %/map.csv $(coreMap) $(dict)
|
|
| 255 |
$(bin)/in_place $< $(bin)/canon 1 $(coreMap)
|
|
| 255 |
%/.map.csv.last_cleanup: %/map.csv $(vocab) $(dict)
|
|
| 256 |
$(bin)/in_place $< $(bin)/canon 1 $(vocab)
|
|
| 256 | 257 |
$(bin)/in_place $< $(bin)/canon 1 $(dict) |
| 257 | 258 |
$(bin)/in_place $< $(bin)/translate 1 $(dict) |
| 258 | 259 |
touch $@ |
| ... | ... | |
| 285 | 286 |
%/unmapped_terms.csv: %/map.csv $(coreMap) |
| 286 | 287 |
$(call newTerms,1,|$(bin)/filter_out_ci 0 $(coreMap)) |
| 287 | 288 |
|
| 288 |
%/new_terms.csv: %/map.csv $(coreMap) $(dict) %/unmapped_terms.csv
|
|
| 289 |
%/new_terms.csv: %/map.csv $(vocab) $(dict) %/unmapped_terms.csv
|
|
| 289 | 290 |
$(call newTerms,0,$(rmNewTerms)) |
| 290 |
rmNewTerms = |$(bin)/filter_out_ci 0 $(coreMap)|$(bin)/filter_out_ci 0 $(dict)\
|
|
| 291 |
rmNewTerms = |$(bin)/filter_out_ci 0 $(vocab)|$(bin)/filter_out_ci 0 $(dict)\
|
|
| 291 | 292 |
$(if $(wildcard $(word 4,$+)),|$(bin)/filter_out_ci 0 $(word 4,$+)) |
| 292 | 293 |
|
| 293 | 294 |
termsSubdirs := $(tables) |
Also available in: Unified diff
input.Makefile: Maps building: Use new mappings/VegCore.csv as the VegCore vocabulary to canonicalize on, in order to also canonicalize VegCore terms which are not yet mapped to VegBIEN. This results in several DwC terms getting their case standardized according to http://rs.tdwg.org/dwc/terms/. Continue to determine unmapped terms using mappings/VegCore-VegBIEN.csv, because a term should not be considered mapped until it has been mapped all the way through to VegBIEN.