Project

General

Profile

1

    
2
"Calcio intercambiable (WSP S-5,10–cmolc/Kg–0.016)",calcium,,
3
"Carbón Orgánico (WSP S-9,10–%–0.06)",carbon,,
4
"Magnesio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",magnesium,,
5
"Materia Orgánica (WSP S-9,10–%–0.1)",organic,,
6
"Potasio intercambiable (WSP S-5,10–cmolc/Kg–0.0053)",potassium,,
7
"Sodio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",sodium,,
8
%cover,coverPercent,,
9
-----
10
-----"
11
1haPlotCode,plotName,,
12
Accession Number,occurrenceID,,
13
Accuracy,coordinateUncertaintyInMeters,,
14
Acidez intercambiable (ISRIC 11–cmolc/Kg–0.05),acidity,,
15
Addcoll,recordedBy,/_join/2,
16
AgeClass,lifeStage,,
17
Altitude,elevationInMeters,,"Assuming units are m based on the range of values [1] and the region the data is from (Madidi National Park) [2].
18
Arcilla (DIN 18 123–%–1),clay,,
19
Area,plotArea_ha,,"""0.1 ha transects"" (""Madidi Transects"" description in <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/BIEN2.datasources.xlsx>)"
20
Arena (DIN 18 123–%–2.5),sand,,
21
AuthorOfScientificName,scientificNameAuthorship,,
22
Autor (revised),scientificNameAuthorship,,
23
Barcode,catalogNumber,,
24
CIC (ISRIC 11–cmolc/Kg–0.05),cationExchangeCapacity,,
25
CatalogNO,catalogNumber,,
26
CatalogNumberNumeric,catalogNumber,/_alt/1,
27
Colldd,dayCollected,,
28
Collect Date,dateCollected,,
29
CollectionCD,collectionCode,,
30
Collectors,recordedBy,,
31
Collmm,monthCollected,,
32
Collyy,yearCollected,,
33
Conductividad electrica (ASPT 6–µS/cm– 1 - 10000),conductivity,,
34
DateInfo,UNUSED,,
35
DetType,voucherType,,"Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
36
Detby,identifiedBy,,
37
Determined by,identifiedBy,,
38
Detyy,yearIdentified,,
39
Diameter,diameterBreastHeight_m,,
40
Direction,slopeAspect,/_alt/1,Part files provide either this field or Orientación
41
Ecology,habitat,,
42
Elev,elevationInMeters,,Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick.
43
Expedition name,projectName,,Consistent (globally unique) between PPM and PT data
44
Expedition number,projectID,,Consistent (globally unique) between PPM and PT data
45
Expedition,projectName,,
46
FROM ""Madidi"".""Plot""
47
FROM ""SALVIAS"".organisms
48
FROM ""SALVIAS-CSV"".organisms
49
Family (revised),family,,
50
Field family,verbatimFamily,,
51
Field name,verbatimGenus,,Often = Genera
52
First evaluation,eventDate,,
53
Format,preparations,,
54
Full Taxon Name,scientificName,,
55
Fósforo disponible (ISRIC 14-2–mg/Kg–1.5),phosphorus,,
56
GBIFFamilyOriginal,verbatimFamily,,
57
GBIFGenusOriginal,verbatimGenus,,
58
GROUP BY ""Altitude""::real , ""Locality""
59
GROUP BY ""Minimum altitude"" , ""Locality""
60
GROUP BY ""PLOT_ID"", subplot
61
GROUP BY ""PlotID"", ""Line""
62
Gazetteer,verbatimLocality,"/_join/1/_label[label=""gazetteer""]/value/_join/1",
63
GenBankNum,associatedSequences,"/_label[label=""GenBank""]/value",
64
Genera,genus,,
65
GeorefMethod,georeferenceProtocol,,
66
HAVING count(DISTINCT census_date) > 1
67
HorizontalDatum,UNUSED,,
68
IdentificationModifier,identificationQualifier,,
69
Ind,recordNumber,,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
70
Index collector,recordedBy,,
71
InfraSpecificLevel,UNUSED,,
72
InstitutionCD,institutionCode,,
73
Inventory code,locationID,,
74
Inventory name,plotName,,
75
LastDateModified,dcterms:modified,,
76
Lat (-=S),verbatimLatitude,"/_replace:[""\?$""=]/value",
77
Lat,decimalLatitude,,
78
LatDec,decimalLatitude,,
79
LatLongComments,georeferenceRemarks,,
80
LatestDateCollected,dateCollected,,
81
Latitude (DMS),verbatimLatitude,,
82
Liana presence,lianaInfestation,,
83
Limo (DIN 18 123–%–1),silt,,
84
Line,subplot,,
85
Locality description,communityName,,Often begins with the text in Vegetation type
86
Locality_Description,locality,,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"
87
Locnotes,verbatimLocality,/_join/2,
88
Long (-=W),verbatimLongitude,"/_replace:[""\?$""=]/value",
89
Long,decimalLongitude,,
90
LongDec,decimalLongitude,,
91
Longitude (DMS),verbatimLongitude,,
92
MajorGeo,continent,,
93
MaximumElevationInMeter,maximumElevationInMeters,,
94
MeasDay,dayCollected,,
95
MeasMon,monthCollected,,
96
MeasYear,yearCollected,,
97
MeasureID,individualID,,
98
Method,samplingProtocol,,
99
Minimum altitude,verbatimElevation_m,,"This is a range [1], not a minimum. Assuming units are m based on the range of values [1] and the region the data is from (Madidi National Park) [2].
100
MinimumElevationInMeter,minimumElevationInMeters,,
101
Newgazett,verbatimLocality,"/_join/1/_label[label=""gazetteer""]/value/_join/2",Only used in 1 row
102
Nitrógeno total (ISRIC 6–%–0.0014),nitrogen,,
103
NoInd,individualCount,,"Brad: This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
104
NoInd,stemCount,,
105
Number of subplot,subplot,,
106
Number,recordNumber,,
107
OBSERVATION_ID,individualID,,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
108
ORDER BY ""Altitude""::real DESC
109
Observaciones,plotNotes,,
110
ObservationDate,eventDate,,
111
Observations,fieldNotes,,
112
Orientación/exposicion,slopeAspect,/_alt/2,Part files provide either this field or Direction
113
OrigFamily,verbatimFamily,,Brad: OMIT
114
OrigGenus,verbatimGenus,,
115
OrigSpecies,verbatimSpecificEpithet,,Brad: OMIT
116
OriginalCoordinateSystem,verbatimSRS,,
117
Phenology,reproductiveCondition,,
118
PlantFungusDescription,fieldNotes,"/_join/2/_label[label=""plant fungus""]/value",
119
PlotCD,locationID,,
120
PlotCode,plotName,,
121
PlotMethod,samplingProtocol,,
122
PlotObsID,individualID,,
123
PlotObsID,individualID,,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
124
PolDiv1,stateProvince,,Brad: No; pol1=stateProvince
125
Precip,precipitation,,
126
Prefix,UNUSED,,
127
Qualifier,identificationQualifier,,
128
RelatedCatalogedItems,relatedResourceID,/_alt/2,Used only when OtherCatalogNumbers is NULL
129
SELECT ""Altitude""::real, ""Locality""
130
SELECT ""Minimum altitude"", ""Locality""
131
SELECT ""PLOT_ID"", subplot, count(DISTINCT census_date) AS census_date_count
132
SELECT ""PlotID"", ""Line"", count(DISTINCT census_date) AS census_date_count
133
SELECT count(*) FROM ""SpeciesLink"".specimens
134
SciName,scientificName,,
135
ScientificNameOriginal,verbatimScientificName,,
136
SeriesName,collectionCode,,
137
SiteCode,plotName,,Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
138
SiteName,projectName,,
139
SizeOfSite,plotArea_ha,,"""Size in hectares"" (SizeOfSite comments in <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/CTFS/_src/ctfs-comments_worksheet.xls>)"
140
Slope,slopeGradient,,
141
SourceVoucher,catalogNumber,/_alt/2,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
142
Specie+autor,scientificNameWithAuthorship,,
143
Species and morphotypes,scientificName,,"Contains less than ""Specie+autor"""
144
SpeciesAuthority,scientificNameAuthorship,,
145
Specimen,catalogNumber,,
146
StemID,authorStemCode,,
147
Substrate,locality,"/_join/2/_label[label=""substrate""]/value",
148
Suffix,UNUSED,,
149
Tag number,tag,,
150
Temp,temperature,,
151
Textural class,texture,,
152
TimeCollected,eventTime,,
153
Tissues,UNUSED,,
154
Topographical situation,landform,,
155
Total height,height,,
156
Tree number,recordNumber,,
157
TreeNumber,tag,,
158
TreeTag,tag,,
159
Trunk,authorStemCode,,
160
Typology,typeStatus,,
161
UniqueNYInternalRecordNumber,occurrenceID,,
162
Vegetation type,communityID,,
163
Vegetation,locality,"/_join/3/_label[label=""vegetation""]/value",
164
VerbatimCollectingDate,dateCollected,/_alt/0,
165
WHERE ""Altitude"" IS NOT NULL AND ""Altitude"" != ' 1430'
166
WHERE ""Line"" IS NOT NULL AND census_date IS NOT NULL
167
WHERE ""Minimum altitude"" IS NOT NULL
168
WHERE COALESCE(""dwc_curatorial_FieldNumber"", ""dwc_terms_fieldNumber"", ""conceptual_darwin_2003_1_0_FieldNumber"") != ""dwc_terms_recordNumber""
169
WHERE subplot IS NOT NULL AND census_date IS NOT NULL
170
X_1haPlot,organismX,,
171
Y_1haPlot,organismY,,
172
[1] Using the following query:
173
[2] This map shows both flat and mountainous regions: <https://maps.google.com/maps/ms?ie=UTF8&hl=en&t=h&msa=0&msid=103363035880599665829.00047e9cf84b87448387d&ll=-13.96448,-68.380065&spn=3.730927,4.669189&z=7>"
174
accession,occurrenceID,,
175
accession_number,occurrenceID,,
176
acronym,collectionCode,,
177
area,plotArea_m2,,"""Total area of the plot in m2"" (area definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=plot&entity=dba_tabledescription&where=where_tablename>)"
178
area|country|territory,country,,
179
auth,scientificNameAuthorship,,Brad: This is the author of the scientificName.
180
authorplantname,verbatimScientificName,,
181
authorplotcode,plotName,,
182
authors,scientificNameAuthorship,,
183
basal_diam,basalDiameter,,
184
campus,fieldNotes,"/_join/5/_label[label=""campus""]/value",
185
census_date,eventDate,,"This is for the subplot, not the organism, as all organisms in a subplot have the same value for it. The following query returns no rows:
186
census_no,censusNumber,,"Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not."
187
cf,identificationQualifier,,
188
cf_aff,identificationQualifier,,"Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
189
cfaff,identificationQualifier,,"Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
190
clay_percent,clay,"/_units:[default=""%"",to=]/value",
191
coll_day,dayCollected,,
192
coll_firstname,recordedBy.givenName,,Brad: See comment above
193
coll_lastname,recordedBy.surName,,"Brad: This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick."
194
coll_month,monthCollected,,
195
coll_number,catalogNumber,/_alt/1,Brad: Map instead as for voucher_string
196
coll_year,yearCollected,,
197
collday,dayCollected,,
198
collectiondate,dateCollected,,
199
collectno,recordNumber,,
200
collector1,recordedBy,/_join/2,
201
collector2,recordedBy,/_join/3,
202
collector3,recordedBy,/_join/4,
203
collmonth,monthCollected,,
204
collyear,yearCollected,,
205
comment1,fieldNotes,/_join/1,
206
comment2,fieldNotes,/_join/2,
207
comment3,fieldNotes,/_join/3,
208
comment4,fieldNotes,/_join/4,
209
conceptual_darwin_2003_1_0_BasisOfRecord,basisOfRecord,,
210
conceptual_darwin_2003_1_0_BoundingBox,footprintWKT,,
211
conceptual_darwin_2003_1_0_CatalogNumber,catalogNumber,,
212
conceptual_darwin_2003_1_0_Class,class,,
213
conceptual_darwin_2003_1_0_CollectionCode,collectionCode,,
214
conceptual_darwin_2003_1_0_Collector,recordedBy,,
215
conceptual_darwin_2003_1_0_CollectorNumber,recordNumber,/_alt/3,
216
conceptual_darwin_2003_1_0_ContinentOcean,continent,,
217
conceptual_darwin_2003_1_0_CoordinatePrecision,coordinatePrecision,,
218
conceptual_darwin_2003_1_0_Country,country,,
219
conceptual_darwin_2003_1_0_County,county,,
220
conceptual_darwin_2003_1_0_DateLastModified,dcterms:modified,,
221
conceptual_darwin_2003_1_0_DayCollected,dayCollected,,
222
conceptual_darwin_2003_1_0_DayIdentified,dayIdentified,,
223
conceptual_darwin_2003_1_0_Family,family,,
224
conceptual_darwin_2003_1_0_FieldNumber,recordNumber,/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)
225
conceptual_darwin_2003_1_0_Genus,genus,,
226
conceptual_darwin_2003_1_0_IdentifiedBy,identifiedBy,,
227
conceptual_darwin_2003_1_0_IndividualCount,individualCount,,
228
conceptual_darwin_2003_1_0_InstitutionCode,institutionCode,,
229
conceptual_darwin_2003_1_0_JulianDay,day,/_alt/1,
230
conceptual_darwin_2003_1_0_Kingdom,kingdom,,
231
conceptual_darwin_2003_1_0_Latitude,verbatimLatitude,,
232
conceptual_darwin_2003_1_0_Locality,locality,,
233
conceptual_darwin_2003_1_0_Longitude,verbatimLongitude,,
234
conceptual_darwin_2003_1_0_MaximumDepth,maximumDepthInMeters,,
235
conceptual_darwin_2003_1_0_MaximumElevation,maximumElevationInMeters,,
236
conceptual_darwin_2003_1_0_MinimumDepth,minimumDepthInMeters,,
237
conceptual_darwin_2003_1_0_MinimumElevation,minimumElevationInMeters,,
238
conceptual_darwin_2003_1_0_MonthCollected,monthCollected,,
239
conceptual_darwin_2003_1_0_MonthIdentified,monthIdentified,,
240
conceptual_darwin_2003_1_0_Notes,fieldNotes,,
241
conceptual_darwin_2003_1_0_Order,order,,
242
conceptual_darwin_2003_1_0_Phylum,phylum,,
243
conceptual_darwin_2003_1_0_PreparationType,preparations,,
244
conceptual_darwin_2003_1_0_PreviousCatalogNumber,otherCatalogNumbers,,
245
conceptual_darwin_2003_1_0_RelatedCatalogItem,relatedResourceID,,
246
conceptual_darwin_2003_1_0_RelationshipType,relationshipOfResource,,
247
conceptual_darwin_2003_1_0_ScientificName,scientificName,,
248
conceptual_darwin_2003_1_0_ScientificNameAuthor,scientificNameAuthorship,/_alt/2,
249
conceptual_darwin_2003_1_0_Sex,sex,,
250
conceptual_darwin_2003_1_0_Species,specificEpithet,,
251
conceptual_darwin_2003_1_0_StateProvince,stateProvince,,
252
conceptual_darwin_2003_1_0_Subspecies,subspecies,,
253
conceptual_darwin_2003_1_0_TimeOfDay,eventTime,,
254
conceptual_darwin_2003_1_0_TypeStatus,typeStatus,,
255
conceptual_darwin_2003_1_0_YearCollected,yearCollected,,
256
conceptual_darwin_2003_1_0_YearIdentified,yearIdentified,,
257
convertednotes,fieldNotes,,
258
currentTaxonName sec Weakley 2006,scientificName,,
259
darwin:BasisOfRecord,basisOfRecord,,
260
darwin:CatalogNumber,catalogNumber,,
261
darwin:Class,class,,
262
darwin:CollectionCode,collectionCode,,
263
darwin:Collector,recordedBy,,
264
darwin:CollectorNumber,recordNumber,,
265
darwin:ContinentOcean,continent,,
266
darwin:CoordinatePrecision,coordinatePrecision,,
267
darwin:Country,country,,
268
darwin:County,county,,
269
darwin:DateLastModified,dcterms:modified,,
270
darwin:DayCollected,dayCollected,,
271
darwin:DayIdentified,dayIdentified,,
272
darwin:Family,family,,
273
darwin:FieldNumber,UNUSED,,"`grep -F ""<darwin:FieldNumber>"" inputs/XAL/src/digir.specimens.xml` returns no lines. This historical DwC term (http://rs.tdwg.org/dwc/terms/history/index.htm#fieldNumber-2009-04-24) has close to the same meaning as recordNumber (http://rs.tdwg.org/dwc/terms/#recordNumber)."
274
darwin:Genus,genus,,
275
darwin:IdentifiedBy,identifiedBy,,
276
darwin:IndividualCount,individualCount,,
277
darwin:InstitutionCode,institutionCode,,
278
darwin:JulianDay,day,,
279
darwin:Kingdom,kingdom,,
280
darwin:Latitude,verbatimLatitude,,
281
darwin:Locality,locality,,
282
darwin:Longitude,verbatimLongitude,,
283
darwin:MaximumDepth,maximumDepthInMeters,,
284
darwin:MaximumElevation,maximumElevationInMeters,,
285
darwin:MinimumDepth,minimumDepthInMeters,,
286
darwin:MinimumElevation,minimumElevationInMeters,,
287
darwin:MonthCollected,monthCollected,,
288
darwin:MonthIdentified,monthIdentified,,
289
darwin:Notes,fieldNotes,,
290
darwin:Order,order,,
291
darwin:Phylum,phylum,,
292
darwin:PreparationType,preparations,,
293
darwin:PreviousCatalogNumber,otherCatalogNumbers,,
294
darwin:RelatedCatalogItem,relatedResourceID,,
295
darwin:RelationshipType,relationshipOfResource,,
296
darwin:ScientificName,scientificName,,
297
darwin:ScientificNameAuthor,scientificNameAuthorship,,
298
darwin:Sex,sex,,
299
darwin:Species,specificEpithet,,
300
darwin:StateProvince,stateProvince,,
301
darwin:Subspecies,subspecies,,
302
darwin:TimeOfDay,eventTime,,
303
darwin:TypeStatus,typeStatus,,
304
darwin:YearCollected,yearCollected,,
305
darwin:YearIdentified,yearIdentified,,
306
date_finish,endDate,,
307
date_start,startDate,,
308
det_type,voucherType,,"Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
309
dwc_curatorial_CollectorNumber,recordNumber,/_alt/3,
310
dwc_curatorial_FieldNumber,recordNumber,/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)
311
dwc_curatorial_IdentifiedBy,identifiedBy,,
312
dwc_curatorial_IndividualCount,individualCount,,
313
dwc_curatorial_TypeStatus,typeStatus,,
314
dwc_dwcore_AuthorYearOfScientificName,scientificNameAuthorship,/_alt/3,
315
dwc_dwcore_BasisOfRecord,basisOfRecord,,
316
dwc_dwcore_CatalogNumber,catalogNumber,,
317
dwc_dwcore_Class,class,,
318
dwc_dwcore_CollectionCode,collectionCode,,
319
dwc_dwcore_Collector,recordedBy,,
320
dwc_dwcore_Continent,continent,,
321
dwc_dwcore_Country,country,,
322
dwc_dwcore_County,county,,
323
dwc_dwcore_DateLastModified,dcterms:modified,,
324
dwc_dwcore_DayOfYear,day,/_alt/2,
325
dwc_dwcore_Family,family,,
326
dwc_dwcore_Genus,genus,,
327
dwc_dwcore_GlobalUniqueIdentifier,occurrenceID,,
328
dwc_dwcore_InfraspecificEpithet,infraspecificEpithet,,
329
dwc_dwcore_InstitutionCode,institutionCode,,
330
dwc_dwcore_Kingdom,kingdom,,
331
dwc_dwcore_Locality,locality,,
332
dwc_dwcore_MaximumDepthInMeters,maximumDepthInMeters,,
333
dwc_dwcore_MaximumElevationInMeters,maximumElevationInMeters,,
334
dwc_dwcore_MinimumDepthInMeters,minimumDepthInMeters,,
335
dwc_dwcore_MinimumElevationInMeters,minimumElevationInMeters,,
336
dwc_dwcore_Order,order,,
337
dwc_dwcore_Phylum,phylum,,
338
dwc_dwcore_Remarks,taxonRemarks,,
339
dwc_dwcore_ScientificName,scientificName,,
340
dwc_dwcore_Sex,sex,,
341
dwc_dwcore_SpecificEpithet,specificEpithet,,
342
dwc_dwcore_StateProvince,stateProvince,,
343
dwc_geospatial_DecimalLatitude,decimalLatitude,,
344
dwc_geospatial_DecimalLongitude,decimalLongitude,,
345
dwc_geospatial_VerbatimLatitude,verbatimLatitude,,
346
dwc_geospatial_VerbatimLongitude,verbatimLongitude,,
347
dwc_terms_basisOfRecord,basisOfRecord,,
348
dwc_terms_catalogNumber,catalogNumber,,
349
dwc_terms_class,class,,
350
dwc_terms_collectionCode,collectionCode,,
351
dwc_terms_collectionID,collectionID,,
352
dwc_terms_continent,continent,,
353
dwc_terms_coordinateUncertaintyInMeters,coordinateUncertaintyInMeters,,
354
dwc_terms_country,country,,
355
dwc_terms_county,county,,
356
dwc_terms_dateIdentified,dateIdentified,,
357
dwc_terms_day,day,,
358
dwc_terms_decimalLatitude,decimalLatitude,,
359
dwc_terms_decimalLongitude,decimalLongitude,,
360
dwc_terms_endDayOfYear,endDayOfYear,,
361
dwc_terms_eventTime,eventTime,,
362
dwc_terms_family,family,,
363
dwc_terms_fieldNumber,recordNumber,/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)
364
dwc_terms_genus,genus,,
365
dwc_terms_identifiedBy,identifiedBy,,
366
dwc_terms_individualCount,individualCount,,
367
dwc_terms_infraspecificEpithet,infraspecificEpithet,,
368
dwc_terms_institutionCode,institutionCode,,
369
dwc_terms_kingdom,kingdom,,
370
dwc_terms_locality,locality,,
371
dwc_terms_maximumDepthInMeters,maximumDepthInMeters,,
372
dwc_terms_maximumElevationInMeters,maximumElevationInMeters,,
373
dwc_terms_minimumDepthInMeters,minimumDepthInMeters,,
374
dwc_terms_minimumElevationInMeters,minimumElevationInMeters,,
375
dwc_terms_month,month,,
376
dwc_terms_occurrenceRemarks,occurrenceRemarks,,
377
dwc_terms_order,order,,
378
dwc_terms_otherCatalogNumbers,otherCatalogNumbers,,
379
dwc_terms_phylum,phylum,,
380
dwc_terms_preparations,preparations,,
381
dwc_terms_recordNumber,recordNumber,/_alt/1,
382
dwc_terms_recordedBy,recordedBy,,
383
dwc_terms_scientificName,scientificName,,
384
dwc_terms_scientificNameAuthorship,scientificNameAuthorship,/_alt/1,
385
dwc_terms_sex,sex,,
386
dwc_terms_specificEpithet,specificEpithet,,
387
dwc_terms_startDayOfYear,startDayOfYear,,
388
dwc_terms_stateProvince,stateProvince,,
389
dwc_terms_typeStatus,typeStatus,,
390
dwc_terms_verbatimLatitude,verbatimLatitude,,
391
dwc_terms_verbatimLongitude,verbatimLongitude,,
392
dwc_terms_year,year,,
393
elev_m,elevationInMeters,,Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick.
394
elev_max_m,maximumElevationInMeters,,
395
elev_min_m,minimumElevationInMeters,,
396
elevationrange,UNUSED,,
397
exchangecapacity,cationExchangeCapacity,,
398
flower,reproductiveCondition,"/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"
399
fruit,reproductiveCondition,"/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"
400
gentry_dbh,diameterBreastHeightGentry,,
401
height_m,height,,
402
height_m,height,/_alt/2,
403
herbarium,institutionCode,,
404
holdridge_life_zone,communityID,,
405
ht_first_branch_m,heightFirstBranch,,
406
http__purl_org_dc_terms_modified,dcterms:modified,,
407
individual_code,recordNumber,,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
408
infra_ep_1,infraspecificEpithet,,
409
infra_rank_1,taxonRank,,
410
infraname,infraspecificEpithet,,
411
infrarank,taxonRank,/_alt/2,
412
inorout,fieldNotes,"/_join/7/_label[label=""in or out""]/value",
413
interpretationdate,dateIdentified,,
414
key,OMIT,,UniqueNYInternalRecordNumber is a better pkey
415
lat_decimal,decimalLatitude,,
416
lat_deg,verbatimLatitude,,
417
leaves,reproductiveCondition,"/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"
418
life_zone,communityName,,
419
life_zone_code,communityID,,
420
life_zone_code,communityName,,
421
loanto,fieldNotes,"/_join/6/_label[label=""loaned to""]/value",
422
locality_description,locality,,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"
423
locationAccuracy-m,coordinateUncertaintyInMeters,,
424
locationaccuracy,coordinateUncertaintyInMeters,,
425
long_decimal,decimalLongitude,,
426
long_deg,verbatimLongitude,,
427
major_geo,continent,,
428
methodnarrative,samplingProtocol,,
429
museumaccessionnumber,catalogNumber,,
430
no_of_individuals,individualCount,,"Brad: This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
431
obsStartDate,startDate,,
432
obsenddate,endDate,,
433
observation_id,eventID,,
434
obsstartdate,startDate,,
435
organic_percent,organic,"/_units:[default=""%"",to=]/value",
436
orig_family,verbatimFamily,,Brad: OMIT
437
orig_species,verbatimSpecificEpithet,,Brad: OMIT
438
pH acuoso (ISRIC 4–– 1 - 14),ph,,
439
parent_id,parentLocationID,,
440
plot_code,plotName,,
441
plot_code,plotName,,Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
442
plot_methodology,samplingProtocol,,
443
pol1,stateProvince,,Brad: No; pol1=stateProvince
444
pol2,county,,Brad: No pol2=countyParish
445
precip_mm,precipitation,,
446
project,projectName,,
447
publicLatitude,decimalLatitude,,
448
publicLongitude,decimalLongitude,,
449
region|state|province,stateProvince,,
450
root,reproductiveCondition,"/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"
451
sand_percent,sand,"/_units:[default=""%"",to=]/value",
452
shape,footprintWKT,,
453
sheetno,associatedMedia,,?
454
silt_percent,silt,"/_units:[default=""%"",to=]/value",
455
soil_C,carbon,"/_units:[default=""%"",to=]/value",
456
soil_Ca,calcium,"/_units:[default=""%"",to=]/value",
457
soil_K,potassium,"/_units:[default=""%"",to=]/value",
458
soil_Mg,magnesium,"/_units:[default=""%"",to=]/value",
459
soil_N,nitrogen,"/_units:[default=""%"",to=]/value",
460
soil_Na,sodium,"/_units:[default=""%"",to=]/value",
461
soil_P,phosphorus,"/_units:[default=""%"",to=]/value/_map:[""<1,5""=0,*=*]/value",
462
soil_acidity,acidity,"/_units:[default=""%"",to=]/value/_map:[""<0.05""=0,*=*]/value",
463
soil_base,baseSaturation,"/_units:[default=""%"",to=]/value",
464
soil_cation_cap,cationExchangeCapacity,,
465
soil_conductivity,conductivity,,
466
soil_texture,texture,"/_units:[default=""%"",to=]/value",
467
soil_texture,texture,,
468
soilclay,clay,,
469
soilorganic,organic,,
470
soilph,ph,,
471
soilsand,sand,,
472
soilsilt,silt,,
473
soiltexture,texture,,
474
specific_authority,scientificNameAuthorship,,Brad: This is the author of the scientificName.
475
stem_canopy_form,canopyForm,,
476
stem_canopy_position,canopyPosition,,
477
stem_dbh,diameterBreastHeight_m,,
478
stem_height_first_branch_m,heightFirstBranch,,"Brad: Same as for ht_first_branch_m, but applies to individuals stems, not trees. Rare."
479
stem_height_m,height,,"Brad: Same as for height, but applies to individuals stems, not trees. Rare."
480
stem_height_m,height,/_alt/1,"Brad: Same as for height, but applies to individuals stems, not trees. Rare."
481
stem_id,stemID,,
482
stem_liana_infestation,lianaInfestation,,
483
stem_tag1,tag,/_alt/1/_alt/2,"The second tag supercedes the first. The stem tag supercedes the tree tag. Brad: Same as tag1 & tag2, but applied to individual stems. I'm still not clear how to distinguish between methods which tag only individuals trees, and those which tag individual stems."
484
stem_tag1,tag,/_alt/2,"The second tag supercedes the first. Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
485
stem_tag2,tag,/_alt/1,"The second tag supercedes the first. Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
486
stem_tag2,tag,/_alt/1/_alt/1,The second tag supercedes the first. The stem tag supercedes the tree tag. Brad: see above
487
tag1,tag,/_alt/2,"The second tag supercedes the first. Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
488
tag1,tag,/_alt/2/_alt/2,"The second tag supercedes the first. The stem tag supercedes the tree tag. Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
489
tag2,tag,/_alt/1,"The second tag supercedes the first. Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
490
tag2,tag,/_alt/2/_alt/1,"The second tag supercedes the first. The stem tag supercedes the tree tag. Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
491
taxonobservation_id,taxonOccurrenceID,,
492
temp_c,temperature,,
493
temp_dbh,diameterBreastHeight_m,,
494
usdaRank,taxonRank,/_alt/1,
495
voucher_string,catalogNumber,/_alt/2,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
496
x,organismX,,
497
x_position,organismX,,"Brad: These are important, fundamental values of many tree plots"
498
y,organismY,,
499
y_position,organismY,,Brad: See comment above for x_position
(4-4/5)