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Revision 4887

Regenerated root unmapped_terms.csv, new_terms.csv

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new_terms.csv
8 8
%cover,coverPercent,,
9 9
-----
10 10
-----"
11
1haPlotCode,plotName,,
11
1ha Plot Number,plotName,,
12
1ha Plot X Coordinate,organismX,,
13
1ha Plot Y Coordinate,organismY,,
12 14
Accession Number,occurrenceID,,
13 15
Accuracy,coordinateUncertaintyInMeters,,
14 16
Acidez intercambiable (ISRIC 11–cmolc/Kg–0.05),acidity,,
......
27 29
Colldd,dayCollected,,
28 30
Collect Date,dateCollected,,
29 31
CollectionCD,collectionCode,,
30
Collectors,recordedBy,,
32
CollectionDate,eventDate,,
31 33
Collmm,monthCollected,,
32 34
Collyy,yearCollected,,
33 35
Conductividad electrica (ASPT 6–µS/cm– 1 - 10000),conductivity,,
......
36 38
Detby,identifiedBy,,
37 39
Determined by,identifiedBy,,
38 40
Detyy,yearIdentified,,
39
Diameter,diameterBreastHeight_m,,
41
Diameter at 1.3m,diameterBreastHeight_cm,,"""Tree diameter measurement. {cm}"" (Diameter definition on p. 7 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)"
42
Diameter,diameterBreastHeight_cm,,"""Tree diameter measurement. {cm}"" (Diameter definition on p. 7 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)"
43
Diameter,diameterBreastHeight_cm,,Assuming units based on the range and precision of values
40 44
Direction,slopeAspect,/_alt/1,Part files provide either this field or Orientación
41 45
Ecology,habitat,,
42 46
Elev,elevationInMeters,,Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick.
......
98 102
Method,samplingProtocol,,
99 103
Minimum altitude,verbatimElevation_m,,"This is a range [1], not a minimum. Assuming units are m based on the range of values [1] and the region the data is from (Madidi National Park) [2].
100 104
MinimumElevationInMeter,minimumElevationInMeters,,
105
Name,plotName,,
106
Names of Collectors,recordedBy,,
101 107
Newgazett,verbatimLocality,"/_join/1/_label[label=""gazetteer""]/value/_join/2",Only used in 1 row
102 108
Nitrógeno total (ISRIC 6–%–0.0014),nitrogen,,
103 109
NoInd,individualCount,,"Brad: This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
......
107 113
OBSERVATION_ID,individualID,,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
108 114
ORDER BY ""Altitude""::real DESC
109 115
Observaciones,plotNotes,,
110
ObservationDate,eventDate,,
116
Observation Date,eventDate,,
111 117
Observations,fieldNotes,,
112 118
Orientación/exposicion,slopeAspect,/_alt/2,Part files provide either this field or Direction
113 119
OrigFamily,verbatimFamily,,Brad: OMIT
......
134 140
SciName,scientificName,,
135 141
ScientificNameOriginal,verbatimScientificName,,
136 142
SeriesName,collectionCode,,
143
Site Name,projectName,,
137 144
SiteCode,plotName,,Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
138
SiteName,projectName,,
139 145
SizeOfSite,plotArea_ha,,"""Size in hectares"" (SizeOfSite comments in <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/CTFS/_src/ctfs-comments_worksheet.xls>)"
140 146
Slope,slopeGradient,,
141 147
SourceVoucher,catalogNumber,/_alt/2,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
148
Spatial Method,samplingProtocol,,
142 149
Specie+autor,scientificNameWithAuthorship,,
143 150
Species and morphotypes,scientificName,,"Contains less than ""Specie+autor"""
144 151
SpeciesAuthority,scientificNameAuthorship,,
145 152
Specimen,catalogNumber,,
146
StemID,authorStemCode,,
153
Subplot Number,subplot,,
147 154
Substrate,locality,"/_join/2/_label[label=""substrate""]/value",
148 155
Suffix,UNUSED,,
149 156
Tag number,tag,,
......
153 160
Tissues,UNUSED,,
154 161
Topographical situation,landform,,
155 162
Total height,height,,
163
Tree Number,tag,,
156 164
Tree number,recordNumber,,
157
TreeNumber,tag,,
158 165
TreeTag,tag,,
159 166
Trunk,authorStemCode,,
160 167
Typology,typeStatus,,
......
167 174
WHERE ""Minimum altitude"" IS NOT NULL
168 175
WHERE COALESCE(""dwc_curatorial_FieldNumber"", ""dwc_terms_fieldNumber"", ""conceptual_darwin_2003_1_0_FieldNumber"") != ""dwc_terms_recordNumber""
169 176
WHERE subplot IS NOT NULL AND census_date IS NOT NULL
170
X_1haPlot,organismX,,
171
Y_1haPlot,organismY,,
172 177
[1] Using the following query:
173 178
[2] This map shows both flat and mountainous regions: <https://maps.google.com/maps/ms?ie=UTF8&hl=en&t=h&msa=0&msid=103363035880599665829.00047e9cf84b87448387d&ll=-13.96448,-68.380065&spn=3.730927,4.669189&z=7>"
174 179
accession,occurrenceID,,
......
474 479
specific_authority,scientificNameAuthorship,,Brad: This is the author of the scientificName.
475 480
stem_canopy_form,canopyForm,,
476 481
stem_canopy_position,canopyPosition,,
477
stem_dbh,diameterBreastHeight_m,,
482
stem_dbh,diameterBreastHeight_cm,,"Assuming units based on the units for intercept_cm, which measures the same dimension"
483
stem_dbh,diameterBreastHeight_cm,,"Assuming units based on the units for plotObservations.intercept_cm, which measures the same dimension"
478 484
stem_height_first_branch_m,heightFirstBranch,,"Brad: Same as for ht_first_branch_m, but applies to individuals stems, not trees. Rare."
479 485
stem_height_m,height,,"Brad: Same as for height, but applies to individuals stems, not trees. Rare."
480 486
stem_height_m,height,/_alt/1,"Brad: Same as for height, but applies to individuals stems, not trees. Rare."
481
stem_id,stemID,,
482 487
stem_liana_infestation,lianaInfestation,,
483 488
stem_tag1,tag,/_alt/1/_alt/2,"The second tag supercedes the first. The stem tag supercedes the tree tag. Brad: Same as tag1 & tag2, but applied to individual stems. I'm still not clear how to distinguish between methods which tag only individuals trees, and those which tag individual stems."
484 489
stem_tag1,tag,/_alt/2,"The second tag supercedes the first. Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
......
490 495
tag2,tag,/_alt/2/_alt/1,"The second tag supercedes the first. The stem tag supercedes the tree tag. Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
491 496
taxonobservation_id,taxonOccurrenceID,,
492 497
temp_c,temperature,,
493
temp_dbh,diameterBreastHeight_m,,
498
temp_dbh,diameterBreastHeight_cm,,"Assuming units based on the units for intercept_cm, which measures the same dimension"
494 499
usdaRank,taxonRank,/_alt/1,
495 500
voucher_string,catalogNumber,/_alt/2,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
496 501
x,organismX,,
unmapped_terms.csv
1 1
"Type Inventory (C, PP, TP)"
2 2
0
3 3
1
4
1ha Plot Coordinate
4 5
25
5 6
3
6 7
AccessCode
......
14 15
Collaborators
15 16
Comments
16 17
Common name
17
ConditionCodes
18
Condition Codes
18 19
Coordinates
19 20
Coorsyst
20 21
CountryID
21 22
Country_index
22 23
Crown position
23 24
Crown shape
25
Data Level
26
Data Set Contact
27
Data Set Creator Institution
28
Data Set Creator Scientist
24 29
Description
25 30
DimX
26 31
DimY
......
43 48
Installed and evaluated by
44 49
Inventory number
45 50
IsMorpho
46
LocationCodes
51
Location Codes
47 52
Majorarea
53
Max Diameter
54
Max Diameter POM
48 55
MethodCode
49 56
NS
57
New Diameter
58
New POM Height
50 59
Number of inventory (expedition)
51 60
Number of inventory (general)
52 61
Number of stems
......
54 63
OMIT
55 64
OrigAuth
56 65
OrigRecordID
66
POM Height
57 67
PRIVATE
58 68
Phenology
59 69
Plot X
......
65 75
PrimOwnerID_index
66 76
PrimaryStem
67 77
Project specimen
68
ProtocolLeadScientist
69
ProtocolLeadScientistInstitution
70
ProtocolVersion
78
Protocol Version
71 79
ReferenceID
72 80
ReferenceX
73 81
ReferenceY
74 82
Related Epilocs
75
ResponsibleInstitution
76 83
RevisionComments
77
SamplingPeriod
78
SamplingUnitName
84
Sampling Period
85
Sampling Unit Name
79 86
Similar specimen
80 87
SiteName
81 88
Soil sample
......
136 143
dateaccuracy
137 144
dateentered
138 145
day
139
dbh_new
140
dbh_new_pom
141
dbh_pom
142 146
dcterms:bibliographicCitation
143 147
dcterms:language
144 148
dcterms:modified
......
235 239
long_min
236 240
long_sec
237 241
long_string
238
max_diam
239
max_diam_pom
240 242
month
241 243
morphocf
242 244
morphoname

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