Revision 49
Added by Aaron Marcuse-Kubitza about 13 years ago
| scripts/util/NYBG-VegBank-VegX_mapping.csv | ||
|---|---|---|
| 1 |
"NYBG","VegBank","VegX" |
|
| 2 |
"key",, |
|
| 3 |
"DateLastModified",, |
|
| 4 |
"InstitutionCode","/taxonInterpretation/museum_ID/party/OrganizationName/_name/firstName","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName/_name/firstName" |
|
| 5 |
"CollectionCode","/taxonInterpretation/museum_ID/party/OrganizationName/_name/lastName","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName/_name/lastName" |
|
| 6 |
"CatalogNumber","/taxonInterpretation/museumAccessionNumber","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/voucher" |
|
| 7 |
"ScientificName","/plantName/plantName","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonName)/Simple" |
|
| 8 |
"BasisOfRecord",, |
|
| 9 |
"Kingdom","/plantName[plantStatus/plantLevel=Kingdom]/plantName","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=reg])/Name" |
|
| 10 |
"Phylum","/plantName[plantStatus/plantLevel=Subkingdom]/plantName","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=phyl_div])/Name" |
|
| 11 |
"Class","/plantName[plantStatus/plantLevel=Class]/plantName","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=cl])/Name" |
|
| 12 |
"Order","/plantName[plantStatus/plantLevel=Order]/plantName","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=ord])/Name" |
|
| 13 |
"Family","/plantName[plantStatus/plantLevel=Family]/plantName","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=fam])/Name" |
|
| 14 |
"Genus","/plantName[plantStatus/plantLevel=Genus]/plantName","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=gen])/Name" |
|
| 15 |
"Species","/plantName[plantStatus/plantLevel=Species]/plantName","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/Name" |
|
| 16 |
"Subspecies","/plantName[plantStatus/plantLevel=Subspecies]/plantName","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=ssp])/Name" |
|
| 17 |
"ScientificNameAuthor","/plantConcept/reference_ID/reference/referenceContributor/referenceParty_ID/referenceParty/{givenName,surname}","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/AccordingTo/Simple"
|
|
| 18 |
"IdentifiedBy","/taxonInterpretation/PARTY_ID/party/{givenName,middleName,surName}","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/partyWithRole[role=identifier]/*ID->/parties/party/individualName/{givenName,surName}"
|
|
| 19 |
"YearIdentified","/taxonInterpretation/interpretationDate/_date/year","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/date/_date/year" |
|
| 20 |
"MonthIdentified","/taxonInterpretation/interpretationDate/_date/month","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/date/_date/month" |
|
| 21 |
"DayIdentified","/taxonInterpretation/interpretationDate/_date/day","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/date/_date/day" |
|
| 22 |
"TypeStatus",, |
|
| 23 |
"CollectorNumber",, |
|
| 24 |
"FieldNumber","/taxonInterpretation/collectionNumber","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/authorCode" |
|
| 25 |
"Collector","/taxonInterpretation/collector_ID/party/{givenName,middleName,surName}","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/partyWithRole[role=collector]/*ID->/parties/party/individualName/{givenName,surName}"
|
|
| 26 |
"YearCollected","/taxonInterpretation/collectionDate/_date/year","/*s/individualOrganismObservation/*ID->/*s/plotObservation/obsStartDate/_date/year" |
|
| 27 |
"MonthCollected","/taxonInterpretation/collectionDate/_date/month","/*s/individualOrganismObservation/*ID->/*s/plotObservation/obsStartDate/_date/month" |
|
| 28 |
"DayCollected","/taxonInterpretation/collectionDate/_date/day","/*s/individualOrganismObservation/*ID->/*s/plotObservation/obsStartDate/_date/day" |
|
| 29 |
"JulianDay",, |
|
| 30 |
"TimeOfDay",, |
|
| 31 |
"ContinentOcean",, |
|
| 32 |
"Country","/namedPlace[placeSystem=area|country|territory]/placeName","/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/country" |
|
| 33 |
"StateProvince","/namedPlace[placeSystem=region|state|province]/placeName","/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/state" |
|
| 34 |
"County","/namedPlace[placeSystem=county]/placeName","/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/county" |
|
| 35 |
"Locality","/namedPlace/placeDescription","/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/simpleUserdefined[name=locality]/value" |
|
| 36 |
"Longitude","/plot/realLongitude","/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/DecimalLongitude" |
|
| 37 |
"Latitude","/plot/realLatitude","/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/DecimalLatitude" |
|
| 38 |
"CoordinatePrecision","/plot/locationAccuracy","/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/CoordinateUncertaintyInMeters" |
|
| 39 |
"BoundingBox","/plot/dsgpoly","/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/FootprintWKT" |
|
| 40 |
"MinimumElevation","/plot/{elevation/min,elevationRange/from}","/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/minimumElevationInMeters"
|
|
| 41 |
"MaximumElevation","/plot/{elevation/max,elevationRange/to}","/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/maximumElevationInMeters"
|
|
| 42 |
"MinimumDepth","/observation/waterDepth/min","/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/minimumDepthInMeters" |
|
| 43 |
"MaximumDepth","/observation/waterDepth/max","/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/maximumDepthInMeters" |
|
| 44 |
"Sex","/userDefined[tableName=taxonInterpretation,userDefinedName=sex]/definedValue","/*s/individualOrganismObservation/individualOrganismID->/*s/individualOrganismObservation/simpleUserdefined[name=sex]/value" |
|
| 45 |
"PreparationType",, |
|
| 46 |
"IndividualCount",, |
|
| 47 |
"PreviousCatalogNumber",, |
|
| 48 |
"RelationshipType",, |
|
| 49 |
"RelatedCatalogItem",, |
|
| 50 |
"Notes","/taxonInterpretation/notes","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text" |
|
| 51 |
"Habitat","/userDefined[tableName=stemLocation,userDefinedName=habitat]/definedValue","/*s/individualOrganismObservation/simpleUserdefined[name=habitat]/value" |
|
| 52 |
"PlantFungusDescription","/userDefined[tableName=stemLocation,userDefinedName=plantFungusDescription]/definedValue","/*s/individualOrganismObservation/simpleUserdefined[name=plantFungusDescription]/value" |
|
| 53 |
"Substrate","/userDefined[tableName=stemLocation,userDefinedName=substrate]/definedValue","/*s/individualOrganismObservation/simpleUserdefined[name=substrate]/value" |
|
| 54 |
"Vegetation","/userDefined[tableName=stemLocation,userDefinedName=vegetation]/definedValue","/*s/individualOrganismObservation/simpleUserdefined[name=vegetation]/value" |
|
| 55 |
"UniqueNYInternalRecordNumber",, |
|
| scripts/data2xml | ||
|---|---|---|
| 12 | 12 |
import xpath |
| 13 | 13 |
|
| 14 | 14 |
def main(): |
| 15 |
prog_name = sys.argv.pop(0) |
|
| 16 |
try: |
|
| 17 |
dest = sys.argv.pop(0) |
|
| 18 |
mappings_path = sys.argv.pop(0) |
|
| 19 |
except IndexError: raise Exception('Usage: '+prog_name
|
|
| 20 |
+' dest_mappings_column mappings_path <dataset >output') |
|
| 15 |
prog_name = sys.argv[0] |
|
| 16 |
try: mappings_path = sys.argv[1] |
|
| 17 |
except ValueError: |
|
| 18 |
raise Exception('Usage: '+prog_name+' mappings_path <dataset >output')
|
|
| 21 | 19 |
|
| 22 | 20 |
# Get mappings |
| 23 | 21 |
mappings = {}
|
| 24 | 22 |
has_types = False # whether outer elements are type containiners |
| 25 | 23 |
stream = open(mappings_path, 'rb') |
| 26 | 24 |
reader = csv.reader(stream, delimiter=',', quotechar='"') |
| 27 |
fieldnames = reader.next() |
|
| 28 |
src = fieldnames[0] |
|
| 29 |
dest_idx = fieldnames.index(dest) |
|
| 25 |
src, dest = reader.next()[:2] |
|
| 30 | 26 |
for row in reader: |
| 31 |
name = row[0] |
|
| 32 |
path = row[dest_idx] |
|
| 27 |
name, path = row[:2] |
|
| 33 | 28 |
if name != '' and path != '': |
| 34 | 29 |
if path.startswith('/*s/'): has_types = True # *s used for type elem
|
| 35 | 30 |
path = path.replace('<name>', name)
|
| scripts/util/NYBG,VegX.csv | ||
|---|---|---|
| 1 |
link ../../mappings/NYBG,VegX.csv |
|
| 0 | 2 | |
| scripts/util/data2xml_test | ||
|---|---|---|
| 8 | 8 |
test -n "$n" || n=2 |
| 9 | 9 |
let n++ |
| 10 | 10 |
|
| 11 |
head -$n NYSpecimenDataAmericas.csv|../data2xml VegX NYBG-VegBank-VegX_mapping.csv |
|
| 11 |
head -$n NYSpecimenDataAmericas.csv|../data2xml NYBG,VegX.csv |
|
| mappings/NYBG,VegX.csv | ||
|---|---|---|
| 1 |
"NYBG","VegX" |
|
| 2 |
"key", |
|
| 3 |
"DateLastModified", |
|
| 4 |
"InstitutionCode","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName/_name/firstName" |
|
| 5 |
"CollectionCode","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName/_name/lastName" |
|
| 6 |
"CatalogNumber","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/voucher" |
|
| 7 |
"ScientificName","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonName)/Simple" |
|
| 8 |
"BasisOfRecord", |
|
| 9 |
"Kingdom","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=reg])/Name" |
|
| 10 |
"Phylum","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=phyl_div])/Name" |
|
| 11 |
"Class","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=cl])/Name" |
|
| 12 |
"Order","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=ord])/Name" |
|
| 13 |
"Family","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=fam])/Name" |
|
| 14 |
"Genus","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=gen])/Name" |
|
| 15 |
"Species","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/Name" |
|
| 16 |
"Subspecies","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=ssp])/Name" |
|
| 17 |
"ScientificNameAuthor","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/AccordingTo/Simple" |
|
| 18 |
"IdentifiedBy","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/partyWithRole[role=identifier]/*ID->/parties/party/individualName/{givenName,surName}"
|
|
| 19 |
"YearIdentified","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/date/_date/year" |
|
| 20 |
"MonthIdentified","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/date/_date/month" |
|
| 21 |
"DayIdentified","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/date/_date/day" |
|
| 22 |
"TypeStatus", |
|
| 23 |
"CollectorNumber", |
|
| 24 |
"FieldNumber","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/authorCode" |
|
| 25 |
"Collector","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/partyWithRole[role=collector]/*ID->/parties/party/individualName/{givenName,surName}"
|
|
| 26 |
"YearCollected","/*s/individualOrganismObservation/*ID->/*s/plotObservation/obsStartDate/_date/year" |
|
| 27 |
"MonthCollected","/*s/individualOrganismObservation/*ID->/*s/plotObservation/obsStartDate/_date/month" |
|
| 28 |
"DayCollected","/*s/individualOrganismObservation/*ID->/*s/plotObservation/obsStartDate/_date/day" |
|
| 29 |
"JulianDay", |
|
| 30 |
"TimeOfDay", |
|
| 31 |
"ContinentOcean", |
|
| 32 |
"Country","/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/country" |
|
| 33 |
"StateProvince","/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/state" |
|
| 34 |
"County","/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/county" |
|
| 35 |
"Locality","/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/simpleUserdefined[name=locality]/value" |
|
| 36 |
"Longitude","/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/DecimalLongitude" |
|
| 37 |
"Latitude","/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/DecimalLatitude" |
|
| 38 |
"CoordinatePrecision","/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/CoordinateUncertaintyInMeters" |
|
| 39 |
"BoundingBox","/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/FootprintWKT" |
|
| 40 |
"MinimumElevation","/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/minimumElevationInMeters" |
|
| 41 |
"MaximumElevation","/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/maximumElevationInMeters" |
|
| 42 |
"MinimumDepth","/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/minimumDepthInMeters" |
|
| 43 |
"MaximumDepth","/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/maximumDepthInMeters" |
|
| 44 |
"Sex","/*s/individualOrganismObservation/individualOrganismID->/*s/individualOrganismObservation/simpleUserdefined[name=sex]/value" |
|
| 45 |
"PreparationType", |
|
| 46 |
"IndividualCount", |
|
| 47 |
"PreviousCatalogNumber", |
|
| 48 |
"RelationshipType", |
|
| 49 |
"RelatedCatalogItem", |
|
| 50 |
"Notes","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text" |
|
| 51 |
"Habitat","/*s/individualOrganismObservation/simpleUserdefined[name=habitat]/value" |
|
| 52 |
"PlantFungusDescription","/*s/individualOrganismObservation/simpleUserdefined[name=plantFungusDescription]/value" |
|
| 53 |
"Substrate","/*s/individualOrganismObservation/simpleUserdefined[name=substrate]/value" |
|
| 54 |
"Vegetation","/*s/individualOrganismObservation/simpleUserdefined[name=vegetation]/value" |
|
| 55 |
"UniqueNYInternalRecordNumber", |
|
| mappings/SALVIAS.metadata,VegX.csv | ||
|---|---|---|
| 1 |
"SALVIAS","VegX" |
|
| 2 |
"project","/*s/plotObservation/*ID->/*s/project/title" |
|
| 3 |
"PLOT_ID", |
|
| 4 |
"plot_code","/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier" |
|
| 5 |
"major_geo","/*s/plotObservation/*UniqueIdentifierID->/*s/plot/simpleUserdefined[name=majorGeo]/value" |
|
| 6 |
"country","/*s/plotObservation/*UniqueIdentifierID->/*s/plot/country" |
|
| 7 |
"pol1","/*s/plotObservation/*UniqueIdentifierID->/*s/plot/state" |
|
| 8 |
"pol2","/*s/plotObservation/*UniqueIdentifierID->/*s/plot/county" |
|
| 9 |
"locality_description","/*s/plotObservation/*UniqueIdentifierID->/*s/plot/simpleUserdefined[name=localityDescription]/value" |
|
| 10 |
"lat_decimal","/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/DecimalLatitude" |
|
| 11 |
"long_decimal","/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/DecimalLongitude" |
|
| 12 |
"elev_m","/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/verbatimElevation" |
|
| 13 |
"elev_max_m","/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/maximumElevationInMeters" |
|
| 14 |
"elev_min_m","/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/minimumElevationInMeters" |
|
| 15 |
"temp_c","/*s/plotObservation/temperature" |
|
| 16 |
"precip_mm","/*s/plotObservation/simpleUserdefined[name=precipMm]/value" |
|
| 17 |
"slope_aspect","/*s/plotObservation/*UniqueIdentifierID->/*s/plot/slopeAspect" |
|
| 18 |
"slope_gradient","/*s/plotObservation/*UniqueIdentifierID->/*s/plot/slopeGradient" |
|
| 19 |
"clay_percent","/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=clayPercent]/value" |
|
| 20 |
"silt_percent","/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=siltPercent]/value" |
|
| 21 |
"sand_percent","/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=sandPercent]/value" |
|
| 22 |
"organic_percent","/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=organicPercent]/value" |
|
| 23 |
"pH","/*s/plotObservation->/*s/abioticObservation[*ID]/ph" |
|
| 24 |
"soil_N","/*s/plotObservation->/*s/abioticObservation[*ID]/nitrogen" |
|
| 25 |
"soil_P","/*s/plotObservation->/*s/abioticObservation[*ID]/phosphorus" |
|
| 26 |
"soil_C","/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=carbon]/value" |
|
| 27 |
"soil_K","/*s/plotObservation->/*s/abioticObservation[*ID]/pottasium" |
|
| 28 |
"soil_Mg","/*s/plotObservation->/*s/abioticObservation[*ID]/magnesium" |
|
| 29 |
"soil_Ca","/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=calcium]/value" |
|
| 30 |
"soil_Na","/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=sodium]/value" |
|
| 31 |
"soil_acidity","/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=acidity]/value" |
|
| 32 |
"soil_base","/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=base]/value" |
|
| 33 |
"soil_cation_cap","/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=cationCap]/value" |
|
| 34 |
"soil_conductivity","/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=conductivity]/value" |
|
| 35 |
"soil_texture","/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=texture]/value" |
|
| 36 |
"holdridge_life_zone","/*s/plotObservation->/*s/communityDetermination[*ID]/communityConcepts/communityConcept/name" |
|
| 37 |
"life_zone_code","/*s/plotObservation->/*s/communityDetermination[*ID]/communityConcepts/communityConcept/commonName" |
|
| 38 |
"observation_type", |
|
| 39 |
"plot_methodology","/*s/plotObservation/simpleUserdefined[name=plotMethodology]/value" |
|
| 40 |
"plot_area_ha","/*s/plotObservation/*UniqueIdentifierID->/*s/plot/area" |
|
| 41 |
"recensused", |
|
| 42 |
"date_start","/*s/plotObservation/obsStartDate" |
|
| 43 |
"date_finish","/*s/plotObservation/obsEndDate" |
|
| mappings/SALVIAS.data,VegX.csv | ||
|---|---|---|
| 1 |
"SALVIAS","VegX" |
|
| 2 |
"OBSERVATION_ID","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/voucher" |
|
| 3 |
"PLOT_ID", |
|
| 4 |
"plot_code","/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/relatedSpatialItem/relatedItem[relationshipType=parentPlot]/relatedItemID->/*s/plot/plotUniqueIdentifier" |
|
| 5 |
"census_no","/*s/individualOrganismObservation/simpleUserdefined[name=censusNo]/value" |
|
| 6 |
"census_date","/*s/individualOrganismObservation/*ID->/*s/plotObservation/obsStartDate" |
|
| 7 |
"subplot","/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier" |
|
| 8 |
"individual_code","/*s/individualOrganismObservation/simpleUserdefined[name=individualCode]/value" |
|
| 9 |
"ind_id", |
|
| 10 |
"tag1","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/identificationLabel" |
|
| 11 |
"tag2","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/identificationLabel" |
|
| 12 |
"x_position","/*s/individualOrganismObservation/simpleUserdefined[name=xPosition]/value" |
|
| 13 |
"y_position","/*s/individualOrganismObservation/simpleUserdefined[name=yPosition]/value" |
|
| 14 |
"voucher_string","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/authorCode" |
|
| 15 |
"coll_number","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/authorCode" |
|
| 16 |
"collector_code", |
|
| 17 |
"coll_lastname","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/surName" |
|
| 18 |
"coll_firstname","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/givenName" |
|
| 19 |
"det_type","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/groupType" |
|
| 20 |
"fam_status", |
|
| 21 |
"gen_status", |
|
| 22 |
"species_status", |
|
| 23 |
"family","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=TaxonScrubber]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=fam])/Name" |
|
| 24 |
"genus","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=TaxonScrubber]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=gen])/Name" |
|
| 25 |
"specific_epithet","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=TaxonScrubber]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/Name" |
|
| 26 |
"specific_authority","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=TaxonScrubber]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/AccordingTo/Simple" |
|
| 27 |
"infra_rank_1","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=TaxonScrubber]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=TaxonomicRankBelowSubspeciesEnum])/Rank" |
|
| 28 |
"infra_ep_1","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=TaxonScrubber]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=TaxonomicRankBelowSubspeciesEnum])/Name" |
|
| 29 |
"cf_aff","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=TaxonScrubber]/note" |
|
| 30 |
"comments", |
|
| 31 |
"habit","/*s/individualOrganismObservation/simpleUserdefined[name=habit]/value" |
|
| 32 |
"no_of_individuals","/*s/individualOrganismObservation/*ID->/*s/plotObservation->/*s/aggregateOrganismObservation[*ID]/simpleUserdefined[name=noOfIndividuals]/value" |
|
| 33 |
"cover_percent","/*s/individualOrganismObservation/simpleUserdefined[name=coverPercent]/value" |
|
| 34 |
"intercept_cm","/*s/individualOrganismObservation/simpleUserdefined[name=interceptCm]/value" |
|
| 35 |
"height_m","/*s/individualOrganismObservation/height" |
|
| 36 |
"ht_first_branch_m","/*s/individualOrganismObservation/simpleUserdefined[name=htFirstBranchM]/value" |
|
| 37 |
"stem_tag1","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/identificationLabel" |
|
| 38 |
"stem_tag2","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/identificationLabel" |
|
| 39 |
"stem_dbh","/*s/individualOrganismObservation/diameterBaseDistance[baseDistance=1.37]/diameter" |
|
| 40 |
"basal_diam","/*s/individualOrganismObservation/diameterBaseDistance[baseDistance=0]/diameter" |
|
| 41 |
"stem_height_m","/*s/individualOrganismObservation/simpleUserdefined[name=stemHeightM]/value" |
|
| 42 |
"stem_height_first_branch_m","/*s/individualOrganismObservation/simpleUserdefined[name=stemHeightFirstBranchM]/value" |
|
| 43 |
"stem_canopy_form","/*s/individualOrganismObservation/simpleUserdefined[name=stemCanopyForm]/value" |
|
| 44 |
"stem_canopy_position","/*s/individualOrganismObservation/simpleUserdefined[name=stemCanopyPosition]/value" |
|
| 45 |
"stem_liana_infestation","/*s/individualOrganismObservation/simpleUserdefined[name=stemLianaInfestation]/value" |
|
| 46 |
"notes","/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text" |
|
| 47 |
"orig_family", |
|
| 48 |
"orig_species", |
|
| mappings/VegX,VegBank.csv | ||
|---|---|---|
| 1 |
"VegX","VegBank" |
|
| 2 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=TaxonScrubber]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=TaxonomicRankBelowSubspeciesEnum])/Name","/plantName[plantStatus/plantLevel=Subspecies]/plantName/epithet" |
|
| 3 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=TaxonScrubber]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=TaxonomicRankBelowSubspeciesEnum])/Rank","/plantName[plantStatus/plantLevel=Subspecies]/plantName/rank" |
|
| 4 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=TaxonScrubber]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=fam])/Name","/plantName[plantStatus/plantLevel=Family]/plantName" |
|
| 5 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=TaxonScrubber]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=gen])/Name","/plantName[plantStatus/plantLevel=Genus]/plantName" |
|
| 6 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=TaxonScrubber]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/AccordingTo/Simple","/plantName[plantStatus/plantLevel=Species]/reference_ID->/referenceParty/{givenName,surname}"
|
|
| 7 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=TaxonScrubber]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/Name","/plantName[plantStatus/plantLevel=Species]/plantName" |
|
| 8 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=TaxonScrubber]/note","/userDefined[tableName=taxonInterpretation,userDefinedName=cfAff]/definedValue " |
|
| 9 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/groupType","/userDefined[tableName=taxonInterpretation,userDefinedName=detType]/definedValue " |
|
| 10 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/givenName","/taxonInterpretation/collector_ID->/party/givenName" |
|
| 11 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/surName","/taxonInterpretation/collector_ID->/party/surName" |
|
| 12 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=cl])/Name","/plantName[plantStatus/plantLevel=Class]/plantName" |
|
| 13 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=fam])/Name","/plantName[plantStatus/plantLevel=Family]/plantName" |
|
| 14 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=gen])/Name","/plantName[plantStatus/plantLevel=Genus]/plantName" |
|
| 15 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=ord])/Name","/plantName[plantStatus/plantLevel=Order]/plantName" |
|
| 16 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=phyl_div])/Name","/plantName[plantStatus/plantLevel=Subkingdom]/plantName" |
|
| 17 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=reg])/Name","/plantName[plantStatus/plantLevel=Kingdom]/plantName" |
|
| 18 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/AccordingTo/Simple","/plantConcept/reference_ID/reference/referenceContributor/referenceParty_ID/referenceParty/{givenName,surname}"
|
|
| 19 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/Name","/plantName[plantStatus/plantLevel=Species]/plantName" |
|
| 20 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=ssp])/Name","/plantName[plantStatus/plantLevel=Subspecies]/plantName" |
|
| 21 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonName)/Simple","/plantName/plantName" |
|
| 22 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/date/_date/day","/taxonInterpretation/interpretationDate/_date/day" |
|
| 23 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/date/_date/month","/taxonInterpretation/interpretationDate/_date/month" |
|
| 24 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/date/_date/year","/taxonInterpretation/interpretationDate/_date/year" |
|
| 25 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/partyWithRole[role=collector]/*ID->/parties/party/individualName/{givenName,surName}","/taxonInterpretation/collector_ID/party/{givenName,middleName,surName}"
|
|
| 26 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/partyWithRole[role=identifier]/*ID->/parties/party/individualName/{givenName,surName}","/taxonInterpretation/PARTY_ID/party/{givenName,middleName,surName}"
|
|
| 27 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/authorCode","/taxonInterpretation/collectionNumber" |
|
| 28 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text","/taxonInterpretation/notes" |
|
| 29 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName/_name/firstName","/taxonInterpretation/museum_ID/party/OrganizationName/_name/firstName" |
|
| 30 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName/_name/lastName","/taxonInterpretation/museum_ID/party/OrganizationName/_name/lastName" |
|
| 31 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/voucher","/taxonInterpretation/museumAccessionNumber" |
|
| 32 |
"/*s/individualOrganismObservation/*ID->/*s/individualOrganism/identificationLabel","/stemLocation/stemCode" |
|
| 33 |
"/*s/individualOrganismObservation/*ID->/*s/plotObservation->/*s/aggregateOrganismObservation[*ID]/simpleUserdefined[name=noOfIndividuals]/value","/stemCount/stemCount" |
|
| 34 |
"/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/country","/namedPlace[placeSystem=area|country|territory]/placeName" |
|
| 35 |
"/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/county","/namedPlace[placeSystem=county]/placeName" |
|
| 36 |
"/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/CoordinateUncertaintyInMeters","/plot/locationAccuracy" |
|
| 37 |
"/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/DecimalLatitude","/plot/realLatitude" |
|
| 38 |
"/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/DecimalLongitude","/plot/realLongitude" |
|
| 39 |
"/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/FootprintWKT","/plot/dsgpoly" |
|
| 40 |
"/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/maximumDepthInMeters","/observation/waterDepth/max" |
|
| 41 |
"/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/maximumElevationInMeters","/plot/{elevation/max,elevationRange/to}"
|
|
| 42 |
"/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/minimumDepthInMeters","/observation/waterDepth/min" |
|
| 43 |
"/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/minimumElevationInMeters","/plot/{elevation/min,elevationRange/from}"
|
|
| 44 |
"/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier","/plot/authorPlotCode" |
|
| 45 |
"/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/relatedSpatialItem/relatedItem[relationshipType=parentPlot]/relatedItemID->/*s/plot/plotUniqueIdentifier","/plot/PARENT_ID->/plot/authorPlotCode" |
|
| 46 |
"/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/simpleUserdefined[name=locality]/value","/namedPlace/placeDescription" |
|
| 47 |
"/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/state","/namedPlace[placeSystem=region|state|province]/placeName" |
|
| 48 |
"/*s/individualOrganismObservation/*ID->/*s/plotObservation/obsStartDate","/taxonInterpretation/collectionDate,observation/authorObsCode" |
|
| 49 |
"/*s/individualOrganismObservation/*ID->/*s/plotObservation/obsStartDate/_date/day","/taxonInterpretation/collectionDate/_date/day" |
|
| 50 |
"/*s/individualOrganismObservation/*ID->/*s/plotObservation/obsStartDate/_date/month","/taxonInterpretation/collectionDate/_date/month" |
|
| 51 |
"/*s/individualOrganismObservation/*ID->/*s/plotObservation/obsStartDate/_date/year","/taxonInterpretation/collectionDate/_date/year" |
|
| 52 |
"/*s/individualOrganismObservation/diameterBaseDistance[baseDistance=0]/diameter","/userDefined[tableName=stemLocation,userDefinedName=basalDiam]/definedValue " |
|
| 53 |
"/*s/individualOrganismObservation/diameterBaseDistance[baseDistance=1.37]/diameter","/stemCount/stemDiameter" |
|
| 54 |
"/*s/individualOrganismObservation/height","/stemCount/stemHeight" |
|
| 55 |
"/*s/individualOrganismObservation/individualOrganismID->/*s/individualOrganismObservation/simpleUserdefined[name=sex]/value","/userDefined[tableName=taxonInterpretation,userDefinedName=sex]/definedValue" |
|
| 56 |
"/*s/individualOrganismObservation/simpleUserdefined[name=censusNo]/value","/userDefined[tableName=taxonInterpretation,userDefinedName=censusNo]/definedValue " |
|
| 57 |
"/*s/individualOrganismObservation/simpleUserdefined[name=coverPercent]/value","/taxonImportance/cover" |
|
| 58 |
"/*s/individualOrganismObservation/simpleUserdefined[name=habit]/value","/userDefined[tableName=taxonInterpretation,userDefinedName=habit]/definedValue " |
|
| 59 |
"/*s/individualOrganismObservation/simpleUserdefined[name=habitat]/value","/userDefined[tableName=stemLocation,userDefinedName=habitat]/definedValue" |
|
| 60 |
"/*s/individualOrganismObservation/simpleUserdefined[name=htFirstBranchM]/value","/userDefined[tableName=stemLocation,userDefinedName=htFirstBranchM]/definedValue " |
|
| 61 |
"/*s/individualOrganismObservation/simpleUserdefined[name=individualCode]/value","/userDefined[tableName=taxonInterpretation,userDefinedName=individualCode]/definedValue " |
|
| 62 |
"/*s/individualOrganismObservation/simpleUserdefined[name=interceptCm]/value","/userDefined[tableName=taxonImportance,userDefinedName=interceptCm]/definedValue " |
|
| 63 |
"/*s/individualOrganismObservation/simpleUserdefined[name=plantFungusDescription]/value","/userDefined[tableName=stemLocation,userDefinedName=plantFungusDescription]/definedValue" |
|
| 64 |
"/*s/individualOrganismObservation/simpleUserdefined[name=stemCanopyForm]/value","/userDefined[tableName=stemLocation,userDefinedName=stemCanopyForm]/definedValue " |
|
| 65 |
"/*s/individualOrganismObservation/simpleUserdefined[name=stemCanopyPosition]/value","/userDefined[tableName=stemLocation,userDefinedName=stemCanopyPosition]/definedValue " |
|
| 66 |
"/*s/individualOrganismObservation/simpleUserdefined[name=stemHeightFirstBranchM]/value","/userDefined[tableName=stemLocation,userDefinedName=stemHeightFirstBranchM]/definedValue " |
|
| 67 |
"/*s/individualOrganismObservation/simpleUserdefined[name=stemHeightM]/value","/stemCount/stemHeight" |
|
| 68 |
"/*s/individualOrganismObservation/simpleUserdefined[name=stemLianaInfestation]/value","/userDefined[tableName=stemLocation,userDefinedName=stemLianaInfestation]/definedValue " |
|
| 69 |
"/*s/individualOrganismObservation/simpleUserdefined[name=substrate]/value","/userDefined[tableName=stemLocation,userDefinedName=substrate]/definedValue" |
|
| 70 |
"/*s/individualOrganismObservation/simpleUserdefined[name=vegetation]/value","/userDefined[tableName=stemLocation,userDefinedName=vegetation]/definedValue" |
|
| 71 |
"/*s/individualOrganismObservation/simpleUserdefined[name=xPosition]/value","/stemLocation/stemXPosition" |
|
| 72 |
"/*s/individualOrganismObservation/simpleUserdefined[name=yPosition]/value","/stemLocation/stemYPosition" |
|
| 73 |
"/*s/plotObservation->/*s/abioticObservation[*ID]/magnesium","/userDefined[tableName=soilObs,userDefinedName=soilMagnesium]/definedValue " |
|
| 74 |
"/*s/plotObservation->/*s/abioticObservation[*ID]/nitrogen","/userDefined[tableName=soilObs,userDefinedName=soilNitrogen]/definedValue " |
|
| 75 |
"/*s/plotObservation->/*s/abioticObservation[*ID]/ph","/soilObs/soilPH" |
|
| 76 |
"/*s/plotObservation->/*s/abioticObservation[*ID]/phosphorus","/userDefined[tableName=soilObs,userDefinedName=soilPhosphorus]/definedValue " |
|
| 77 |
"/*s/plotObservation->/*s/abioticObservation[*ID]/pottasium","/userDefined[tableName=soilObs,userDefinedName=soilPotassium]/definedValue " |
|
| 78 |
"/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=acidity]/value","/userDefined[tableName=soilObs,userDefinedName=soilAcidity]/definedValue " |
|
| 79 |
"/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=base]/value","/userDefined[tableName=soilObs,userDefinedName=soilBase]/definedValue " |
|
| 80 |
"/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=calcium]/value","/userDefined[tableName=soilObs,userDefinedName=soilCalcium]/definedValue " |
|
| 81 |
"/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=carbon]/value","/userDefined[tableName=soilObs,userDefinedName=soilCarbon]/definedValue " |
|
| 82 |
"/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=cationCap]/value","/userDefined[tableName=soilObs,userDefinedName=soilCationCap]/definedValue " |
|
| 83 |
"/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=clayPercent]/value","/soilObs/soilClay" |
|
| 84 |
"/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=conductivity]/value","/userDefined[tableName=soilObs,userDefinedName=soilConductivity]/definedValue " |
|
| 85 |
"/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=organicPercent]/value","/soilObs/soilOrganic" |
|
| 86 |
"/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=sandPercent]/value","/soilObs/soilSand" |
|
| 87 |
"/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=siltPercent]/value","/soilObs/soilSilt" |
|
| 88 |
"/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=sodium]/value","/userDefined[tableName=soilObs,userDefinedName=soilSodium]/definedValue " |
|
| 89 |
"/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=texture]/value","/soilObs/soilTexture" |
|
| 90 |
"/*s/plotObservation->/*s/communityDetermination[*ID]/communityConcepts/communityConcept/commonName","/commName/commName" |
|
| 91 |
"/*s/plotObservation->/*s/communityDetermination[*ID]/communityConcepts/communityConcept/name","/commConcept/commDescription" |
|
| 92 |
"/*s/plotObservation/*ID->/*s/project/title","/project/projectName" |
|
| 93 |
"/*s/plotObservation/*UniqueIdentifierID->/*s/plot/area","/plot/area" |
|
| 94 |
"/*s/plotObservation/*UniqueIdentifierID->/*s/plot/country","/namedPlace[placeSystem=area|country|territory]/placeName" |
|
| 95 |
"/*s/plotObservation/*UniqueIdentifierID->/*s/plot/county","/namedPlace[placeSystem=Geographic Name]/placeName" |
|
| 96 |
"/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/DecimalLatitude","/plot/realLatitude" |
|
| 97 |
"/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/DecimalLongitude","/plot/realLongitude" |
|
| 98 |
"/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/maximumElevationInMeters","/plot/elevationRange/max" |
|
| 99 |
"/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/minimumElevationInMeters","/plot/elevationRange/min" |
|
| 100 |
"/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/verbatimElevation","/plot/elevation" |
|
| 101 |
"/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier","/plot/authorPlotCode,observation/authorObsCode" |
|
| 102 |
"/*s/plotObservation/*UniqueIdentifierID->/*s/plot/simpleUserdefined[name=localityDescription]/value","/namedPlace/placeDescription" |
|
| 103 |
"/*s/plotObservation/*UniqueIdentifierID->/*s/plot/simpleUserdefined[name=majorGeo]/value","/namedPlace[placeSystem=continent]/placeName" |
|
| 104 |
"/*s/plotObservation/*UniqueIdentifierID->/*s/plot/slopeAspect","/plot/slopeAspect" |
|
| 105 |
"/*s/plotObservation/*UniqueIdentifierID->/*s/plot/slopeGradient","/plot/slopeGradient" |
|
| 106 |
"/*s/plotObservation/*UniqueIdentifierID->/*s/plot/state","/namedPlace[placeSystem=Geographic Name]/placeName" |
|
| 107 |
"/*s/plotObservation/obsEndDate","/observation/obsEndDate" |
|
| 108 |
"/*s/plotObservation/obsStartDate","/observation/obsStartDate" |
|
| 109 |
"/*s/plotObservation/simpleUserdefined[name=plotMethodology]/value","/observation/methodNarrative" |
|
| 110 |
"/*s/plotObservation/simpleUserdefined[name=precipMm]/value","/userDefined[tableName=observation,userDefinedName=precipMm]/definedValue " |
|
| 111 |
"/*s/plotObservation/temperature","/userDefined[tableName=observation,userDefinedName=tempC]/definedValue " |
|
Also available in: Unified diff
Added refactored mappings and changed data2xml to use the new 2-column format