| 1 |
4651
|
aaronmk
|
SALVIAS,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
|
| 2 |
4336
|
aaronmk
|
SiteCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
|
| 3 |
|
|
PlotID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
|
| 4 |
4324
|
aaronmk
|
PlotID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
|
| 5 |
|
|
SiteCode,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
|
| 6 |
|
|
PlotID,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
|
| 7 |
4767
|
aaronmk
|
plot_area_ha,/location/area_m2/_ha_to_m2/value,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
|
| 8 |
4809
|
aaronmk
|
Elev,/location/elevation_m/_alt/1,Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick.
|
| 9 |
4820
|
aaronmk
|
elev_max_m,/location/elevation_m/_alt/2/_avg/max,
|
| 10 |
4822
|
aaronmk
|
elev_min_m,/location/elevation_m/_alt/2/_avg/min,
|
| 11 |
4907
|
aaronmk
|
LatDec,"/location/locationcoords/latitude_deg/_nullIf:[null=0,type=float]/value",
|
| 12 |
|
|
LongDec,"/location/locationcoords/longitude_deg/_nullIf:[null=0,type=float]/value",
|
| 13 |
3968
|
aaronmk
|
PlotMethod,/location/locationevent/*_id/method/name,
|
| 14 |
4467
|
aaronmk
|
project_id,/location/locationevent/*_id/project/sourceaccessioncode,
|
| 15 |
4458
|
aaronmk
|
SiteCode,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/authorlocationcode",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
|
| 16 |
|
|
PlotID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
|
| 17 |
3968
|
aaronmk
|
life_zone_code,/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname,
|
| 18 |
|
|
life_zone,/location/locationevent/commclass/commdetermination/*_id/commconcept/commdescription,
|
| 19 |
4563
|
aaronmk
|
date_finish,/location/locationevent/obsenddate/_*/date/_alt/1,
|
| 20 |
|
|
date_start,/location/locationevent/obsstartdate/_*/date/_alt/1,
|
| 21 |
4753
|
aaronmk
|
Precip,/location/locationevent/precipitation_m,
|
| 22 |
4908
|
aaronmk
|
soil_acidity,"/location/locationevent/soilobs/acidity_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value/_map:[""<0.05""=0,*=*]/value",
|
| 23 |
|
|
soil_base,"/location/locationevent/soilobs/basesaturation_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
|
| 24 |
|
|
soil_Ca,"/location/locationevent/soilobs/calcium_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
|
| 25 |
|
|
soil_C,"/location/locationevent/soilobs/carbon_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
|
| 26 |
4754
|
aaronmk
|
soil_cation_cap,/location/locationevent/soilobs/cationexchangecapacity_cmol_kg,
|
| 27 |
4908
|
aaronmk
|
clay_percent,"/location/locationevent/soilobs/clay_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
|
| 28 |
3968
|
aaronmk
|
soil_conductivity,/location/locationevent/soilobs/conductivity,
|
| 29 |
4908
|
aaronmk
|
soil_Mg,"/location/locationevent/soilobs/magnesium_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
|
| 30 |
|
|
soil_N,"/location/locationevent/soilobs/nitrogen_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
|
| 31 |
|
|
organic_percent,"/location/locationevent/soilobs/organic_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
|
| 32 |
3968
|
aaronmk
|
pH,/location/locationevent/soilobs/ph,"Brad: For all these soil variables, how do we store information on method, units. Seems like an ontological structure would be more appropriate (measurementName, measurementValue, measurementUnits, measurementMethod). Same as BIEN traits table. Something to discuss."
|
| 33 |
4908
|
aaronmk
|
soil_P,"/location/locationevent/soilobs/phosphorus_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value/_map:[""<1,5""=0,*=*]/value",
|
| 34 |
|
|
soil_K,"/location/locationevent/soilobs/potassium_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
|
| 35 |
|
|
sand_percent,"/location/locationevent/soilobs/sand_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
|
| 36 |
|
|
silt_percent,"/location/locationevent/soilobs/silt_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
|
| 37 |
|
|
soil_Na,"/location/locationevent/soilobs/sodium_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
|
| 38 |
3968
|
aaronmk
|
soil_texture,"/location/locationevent/soilobs/texture/_units:[default=""%"",to=]/value",
|
| 39 |
4833
|
aaronmk
|
PlotID,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/1/_first/2/_if[@name=""if is organism""]/cond/_exists","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
|
| 40 |
|
|
SiteCode,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/1/_first/2/_if[@name=""if is organism""]/cond/_exists",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
|
| 41 |
4753
|
aaronmk
|
Temp,/location/locationevent/temperature_c,
|
| 42 |
3983
|
aaronmk
|
Locality_Description,/location/locationnarrative/_merge/1,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"
|
| 43 |
4638
|
aaronmk
|
Habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
|
| 44 |
4727
|
aaronmk
|
MajorGeo,/location/locationplace/*_id/placepath/continent,
|
| 45 |
|
|
Country,/location/locationplace/*_id/placepath/country,
|
| 46 |
|
|
pol2,/location/locationplace/*_id/placepath/county,Brad: No pol2=countyParish
|
| 47 |
|
|
PolDiv1,/location/locationplace/*_id/placepath/stateprovince,Brad: No; pol1=stateProvince
|
| 48 |
4638
|
aaronmk
|
plot_notes,/location/notespublic,
|
| 49 |
4753
|
aaronmk
|
slope_aspect,/location/slopeaspect_deg/_alt/1/_compass/value,
|
| 50 |
4786
|
aaronmk
|
slope_gradient,/location/slopegradient_fraction/_alt/1,
|
| 51 |
4638
|
aaronmk
|
AccessCode,,** No join mapping for AccessCode **
|
| 52 |
|
|
Country_index,,** No join mapping for Country_index **
|
| 53 |
|
|
ElevSource,,** No join mapping for ElevSource **
|
| 54 |
|
|
MethodCode,,** No join mapping for MethodCode **
|
| 55 |
|
|
PrecipSource,,** No join mapping for PrecipSource **
|
| 56 |
|
|
PrimOwnerID,,** No join mapping for PrimOwnerID **
|
| 57 |
|
|
PrimOwnerID_index,,** No join mapping for PrimOwnerID_index **
|
| 58 |
|
|
RevisionComments,,** No join mapping for RevisionComments **
|
| 59 |
|
|
SiteName,,** No join mapping for SiteName **
|
| 60 |
|
|
TempSource,,** No join mapping for TempSource **
|
| 61 |
|
|
bearing,,** No join mapping for bearing **
|
| 62 |
|
|
lat_long_accuracy,,** No join mapping for lat_long_accuracy **
|
| 63 |
|
|
lat_string,,** No join mapping for lat_string **
|
| 64 |
|
|
long_string,,** No join mapping for long_string **
|
| 65 |
|
|
new_world,,** No join mapping for new_world **
|
| 66 |
|
|
orig_filename,,** No join mapping for orig_filename **
|
| 67 |
|
|
plot_administrator,,** No join mapping for plot_administrator **
|
| 68 |
|
|
plot_administrator_index,,** No join mapping for plot_administrator_index **
|
| 69 |
|
|
pol1_type,,** No join mapping for pol1_type **
|
| 70 |
|
|
pol2_type,,** No join mapping for pol2_type **
|
| 71 |
|
|
project_id_index,,** No join mapping for project_id_index **
|
| 72 |
|
|
recensused,,"** No join mapping for recensused ** Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values"
|
| 73 |
|
|
tmp_del,,** No join mapping for tmp_del **
|
| 74 |
|
|
topography_desc,,** No join mapping for topography_desc **
|
| 75 |
|
|
vegetation_1,,** No join mapping for vegetation_1 **
|
| 76 |
|
|
vegetation_2,,** No join mapping for vegetation_2 **
|
