Project

General

Profile

« Previous | Next » 

Revision 4912

Added by Aaron Marcuse-Kubitza over 12 years ago

inputs/SALVIAS/plotMetadata/map.csv, inputs/SALVIAS-CSV/Plot/map.csv: Soil component measurements: Removed no longer needed old-style _units filter, now that unit conversion is handled by mappings/VegCore-VegBIEN.csv using _percent_to_fraction

View differences:

inputs/SALVIAS-CSV/Plot/map.csv
16 16 
precip_mm,precipitation,,
17 17 
slope_aspect,slopeAspect,,
18 18 
slope_gradient,slopeGradient,,
19 
clay_percent,clay_percent,"/_units:[default=""%"",to=]/value",
20 
silt_percent,silt_percent,"/_units:[default=""%"",to=]/value",
21 
sand_percent,sand_percent,"/_units:[default=""%"",to=]/value",
22 
organic_percent,organic_percent,"/_units:[default=""%"",to=]/value",
19 
clay_percent,clay_percent,,
20 
silt_percent,silt_percent,,
21 
sand_percent,sand_percent,,
22 
organic_percent,organic_percent,,
23 23 
pH,ph,,"Brad: For all these soil variables, how do we store information on method, units. Seems like an ontological structure would be more appropriate (measurementName, measurementValue, measurementUnits, measurementMethod). Same as BIEN traits table. Something to discuss."
24 
soil_N,nitrogen_percent,"/_units:[default=""%"",to=]/value",
25 
soil_P,phosphorus_percent,"/_units:[default=""%"",to=]/value/_map:[""<1,5""=0,*=*]/value",
26 
soil_C,carbon_percent,"/_units:[default=""%"",to=]/value",
27 
soil_K,potassium_percent,"/_units:[default=""%"",to=]/value",
28 
soil_Mg,magnesium_percent,"/_units:[default=""%"",to=]/value",
29 
soil_Ca,calcium_percent,"/_units:[default=""%"",to=]/value",
30 
soil_Na,sodium_percent,"/_units:[default=""%"",to=]/value",
31 
soil_acidity,acidity_percent,"/_units:[default=""%"",to=]/value/_map:[""<0.05""=0,*=*]/value",
32 
soil_base,baseSaturation_percent,"/_units:[default=""%"",to=]/value",
24 
soil_N,nitrogen_percent,,
25 
soil_P,phosphorus_percent,"/_map:[""<0.05""=0,*=*]/value",
26 
soil_C,carbon_percent,,
27 
soil_K,potassium_percent,,
28 
soil_Mg,magnesium_percent,,
29 
soil_Ca,calcium_percent,,
30 
soil_Na,sodium_percent,,
31 
soil_acidity,acidity_percent,"/_map:[""<0.05""=0,*=*]/value",
32 
soil_base,baseSaturation_percent,,
33 33 
soil_cation_cap,cationExchangeCapacity_cmol_kg,,
34 34 
soil_conductivity,conductivity,,
35 35 
soil_texture,texture,,
inputs/SALVIAS-CSV/Plot/VegBIEN.csv
19 19 
date_finish,/location/locationevent/obsenddate/_*/date/_alt/1,
20 20 
date_start,/location/locationevent/obsstartdate/_*/date/_alt/1,
21 21 
precip_mm,/location/locationevent/precipitation_m,
22 
soil_acidity,"/location/locationevent/soilobs/acidity_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value/_map:[""<0.05""=0,*=*]/value",
23 
soil_base,"/location/locationevent/soilobs/basesaturation_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
24 
soil_Ca,"/location/locationevent/soilobs/calcium_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
25 
soil_C,"/location/locationevent/soilobs/carbon_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
22 
soil_acidity,"/location/locationevent/soilobs/acidity_fraction/_percent_to_fraction/value/_map:[""<0.05""=0,*=*]/value",
23 
soil_base,/location/locationevent/soilobs/basesaturation_fraction/_percent_to_fraction/value,
24 
soil_Ca,/location/locationevent/soilobs/calcium_fraction/_percent_to_fraction/value,
25 
soil_C,/location/locationevent/soilobs/carbon_fraction/_percent_to_fraction/value,
26 26 
soil_cation_cap,/location/locationevent/soilobs/cationexchangecapacity_cmol_kg,
27 
clay_percent,"/location/locationevent/soilobs/clay_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
27 
clay_percent,/location/locationevent/soilobs/clay_fraction/_percent_to_fraction/value,
28 28 
soil_conductivity,/location/locationevent/soilobs/conductivity,
29 
soil_Mg,"/location/locationevent/soilobs/magnesium_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
30 
soil_N,"/location/locationevent/soilobs/nitrogen_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
31 
organic_percent,"/location/locationevent/soilobs/organic_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
29 
soil_Mg,/location/locationevent/soilobs/magnesium_fraction/_percent_to_fraction/value,
30 
soil_N,/location/locationevent/soilobs/nitrogen_fraction/_percent_to_fraction/value,
31 
organic_percent,/location/locationevent/soilobs/organic_fraction/_percent_to_fraction/value,
32 32 
pH,/location/locationevent/soilobs/ph,"Brad: For all these soil variables, how do we store information on method, units. Seems like an ontological structure would be more appropriate (measurementName, measurementValue, measurementUnits, measurementMethod). Same as BIEN traits table. Something to discuss."
33 
soil_P,"/location/locationevent/soilobs/phosphorus_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value/_map:[""<1,5""=0,*=*]/value",
34 
soil_K,"/location/locationevent/soilobs/potassium_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
35 
sand_percent,"/location/locationevent/soilobs/sand_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
36 
silt_percent,"/location/locationevent/soilobs/silt_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
37 
soil_Na,"/location/locationevent/soilobs/sodium_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
33 
soil_P,"/location/locationevent/soilobs/phosphorus_fraction/_percent_to_fraction/value/_map:[""<0.05""=0,*=*]/value",
34 
soil_K,/location/locationevent/soilobs/potassium_fraction/_percent_to_fraction/value,
35 
sand_percent,/location/locationevent/soilobs/sand_fraction/_percent_to_fraction/value,
36 
silt_percent,/location/locationevent/soilobs/silt_fraction/_percent_to_fraction/value,
37 
soil_Na,/location/locationevent/soilobs/sodium_fraction/_percent_to_fraction/value,
38 38 
soil_texture,/location/locationevent/soilobs/texture,
39 39 
PLOT_ID,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/1/_first/2/_if[@name=""if is organism""]/cond/_exists","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
40 40 
plot_code,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/1/_first/2/_if[@name=""if is organism""]/cond/_exists",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
inputs/SALVIAS-CSV/Plot/test.xml.ref
54 54 
                        <acidity_fraction>
55 55 
                            <_percent_to_fraction>
56 56 
                                <value>
57 
                                    <_units>
58 
                                        <default>%</default>
59 
                                        <to></to>
60 
                                        <value>
61 
                                            <_map>
62 
                                                <<0.05>0</<0.05>
63 
                                                <*>*</*>
64 
                                                <value>$soil_acidity</value>
65 
                                            </_map>
66 
                                        </value>
67 
                                    </_units>
57 
                                    <_map>
58 
                                        <<0.05>0</<0.05>
59 
                                        <*>*</*>
60 
                                        <value>$soil_acidity</value>
61 
                                    </_map>
68 62 
                                </value>
69 63 
                            </_percent_to_fraction>
70 64 
                        </acidity_fraction>
71 
                        <basesaturation_fraction>
72 
                            <_percent_to_fraction>
73 
                                <value>
74 
                                    <_units>
75 
                                        <default>%</default>
76 
                                        <to></to>
77 
                                        <value>$soil_base</value>
78 
                                    </_units>
79 
                                </value>
80 
                            </_percent_to_fraction>
81 
                        </basesaturation_fraction>
82 
                        <calcium_fraction>
83 
                            <_percent_to_fraction>
84 
                                <value>
85 
                                    <_units>
86 
                                        <default>%</default>
87 
                                        <to></to>
88 
                                        <value>$soil_Ca</value>
89 
                                    </_units>
90 
                                </value>
91 
                            </_percent_to_fraction>
92 
                        </calcium_fraction>
93 
                        <carbon_fraction>
94 
                            <_percent_to_fraction>
95 
                                <value>
96 
                                    <_units>
97 
                                        <default>%</default>
98 
                                        <to></to>
99 
                                        <value>$soil_C</value>
100 
                                    </_units>
101 
                                </value>
102 
                            </_percent_to_fraction>
103 
                        </carbon_fraction>
65 
                        <basesaturation_fraction><_percent_to_fraction><value>$soil_base</value></_percent_to_fraction></basesaturation_fraction>
66 
                        <calcium_fraction><_percent_to_fraction><value>$soil_Ca</value></_percent_to_fraction></calcium_fraction>
67 
                        <carbon_fraction><_percent_to_fraction><value>$soil_C</value></_percent_to_fraction></carbon_fraction>
104 68 
                        <cationexchangecapacity_cmol_kg>$soil_cation_cap</cationexchangecapacity_cmol_kg>
105 
                        <clay_fraction>
106 
                            <_percent_to_fraction>
107 
                                <value>
108 
                                    <_units>
109 
                                        <default>%</default>
110 
                                        <to></to>
111 
                                        <value>$clay_percent</value>
112 
                                    </_units>
113 
                                </value>
114 
                            </_percent_to_fraction>
115 
                        </clay_fraction>
69 
                        <clay_fraction><_percent_to_fraction><value>$clay_percent</value></_percent_to_fraction></clay_fraction>
116 70 
                        <conductivity>$soil_conductivity</conductivity>
117 
                        <magnesium_fraction>
118 
                            <_percent_to_fraction>
119 
                                <value>
120 
                                    <_units>
121 
                                        <default>%</default>
122 
                                        <to></to>
123 
                                        <value>$soil_Mg</value>
124 
                                    </_units>
125 
                                </value>
126 
                            </_percent_to_fraction>
127 
                        </magnesium_fraction>
128 
                        <nitrogen_fraction>
129 
                            <_percent_to_fraction>
130 
                                <value>
131 
                                    <_units>
132 
                                        <default>%</default>
133 
                                        <to></to>
134 
                                        <value>$soil_N</value>
135 
                                    </_units>
136 
                                </value>
137 
                            </_percent_to_fraction>
138 
                        </nitrogen_fraction>
139 
                        <organic_fraction>
140 
                            <_percent_to_fraction>
141 
                                <value>
142 
                                    <_units>
143 
                                        <default>%</default>
144 
                                        <to></to>
145 
                                        <value>$organic_percent</value>
146 
                                    </_units>
147 
                                </value>
148 
                            </_percent_to_fraction>
149 
                        </organic_fraction>
71 
                        <magnesium_fraction><_percent_to_fraction><value>$soil_Mg</value></_percent_to_fraction></magnesium_fraction>
72 
                        <nitrogen_fraction><_percent_to_fraction><value>$soil_N</value></_percent_to_fraction></nitrogen_fraction>
73 
                        <organic_fraction><_percent_to_fraction><value>$organic_percent</value></_percent_to_fraction></organic_fraction>
150 74 
                        <ph>$pH</ph>
151 75 
                        <phosphorus_fraction>
152 76 
                            <_percent_to_fraction>
153 77 
                                <value>
154 
                                    <_units>
155 
                                        <default>%</default>
156 
                                        <to></to>
157 
                                        <value>
158 
                                            <_map>
159 
                                                <<1,5>0</<1,5>
160 
                                                <*>*</*>
161 
                                                <value>$soil_P</value>
162 
                                            </_map>
163 
                                        </value>
164 
                                    </_units>
78 
                                    <_map>
79 
                                        <<0.05>0</<0.05>
80 
                                        <*>*</*>
81 
                                        <value>$soil_P</value>
82 
                                    </_map>
165 83 
                                </value>
166 84 
                            </_percent_to_fraction>
167 85 
                        </phosphorus_fraction>
168 
                        <potassium_fraction>
169 
                            <_percent_to_fraction>
170 
                                <value>
171 
                                    <_units>
172 
                                        <default>%</default>
173 
                                        <to></to>
174 
                                        <value>$soil_K</value>
175 
                                    </_units>
176 
                                </value>
177 
                            </_percent_to_fraction>
178 
                        </potassium_fraction>
179 
                        <sand_fraction>
180 
                            <_percent_to_fraction>
181 
                                <value>
182 
                                    <_units>
183 
                                        <default>%</default>
184 
                                        <to></to>
185 
                                        <value>$sand_percent</value>
186 
                                    </_units>
187 
                                </value>
188 
                            </_percent_to_fraction>
189 
                        </sand_fraction>
190 
                        <silt_fraction>
191 
                            <_percent_to_fraction>
192 
                                <value>
193 
                                    <_units>
194 
                                        <default>%</default>
195 
                                        <to></to>
196 
                                        <value>$silt_percent</value>
197 
                                    </_units>
198 
                                </value>
199 
                            </_percent_to_fraction>
200 
                        </silt_fraction>
201 
                        <sodium_fraction>
202 
                            <_percent_to_fraction>
203 
                                <value>
204 
                                    <_units>
205 
                                        <default>%</default>
206 
                                        <to></to>
207 
                                        <value>$soil_Na</value>
208 
                                    </_units>
209 
                                </value>
210 
                            </_percent_to_fraction>
211 
                        </sodium_fraction>
86 
                        <potassium_fraction><_percent_to_fraction><value>$soil_K</value></_percent_to_fraction></potassium_fraction>
87 
                        <sand_fraction><_percent_to_fraction><value>$sand_percent</value></_percent_to_fraction></sand_fraction>
88 
                        <silt_fraction><_percent_to_fraction><value>$silt_percent</value></_percent_to_fraction></silt_fraction>
89 
                        <sodium_fraction><_percent_to_fraction><value>$soil_Na</value></_percent_to_fraction></sodium_fraction>
212 90 
                        <texture>$soil_texture</texture>
213 91 
                    </soilobs>
214 92 
                    <temperature_c>$temp_c</temperature_c>
inputs/SALVIAS-CSV/Plot/new_terms.csv
11 11 
elev_min_m,minimumElevationInMeters,,
12 12 
temp_c,temperature,,
13 13 
precip_mm,precipitation,,
14 
soil_N,nitrogen_percent,"/_units:[default=""%"",to=]/value",
15 
soil_P,phosphorus_percent,"/_units:[default=""%"",to=]/value/_map:[""<1,5""=0,*=*]/value",
16 
soil_C,carbon_percent,"/_units:[default=""%"",to=]/value",
17 
soil_K,potassium_percent,"/_units:[default=""%"",to=]/value",
18 
soil_Mg,magnesium_percent,"/_units:[default=""%"",to=]/value",
19 
soil_Ca,calcium_percent,"/_units:[default=""%"",to=]/value",
20 
soil_Na,sodium_percent,"/_units:[default=""%"",to=]/value",
21 
soil_acidity,acidity_percent,"/_units:[default=""%"",to=]/value/_map:[""<0.05""=0,*=*]/value",
22 
soil_base,baseSaturation_percent,"/_units:[default=""%"",to=]/value",
14 
soil_N,nitrogen_percent,,
15 
soil_P,phosphorus_percent,"/_map:[""<0.05""=0,*=*]/value",
16 
soil_C,carbon_percent,,
17 
soil_K,potassium_percent,,
18 
soil_Mg,magnesium_percent,,
19 
soil_Ca,calcium_percent,,
20 
soil_Na,sodium_percent,,
21 
soil_acidity,acidity_percent,"/_map:[""<0.05""=0,*=*]/value",
22 
soil_base,baseSaturation_percent,,
23 23 
soil_cation_cap,cationExchangeCapacity_cmol_kg,,
24 24 
soil_conductivity,conductivity,,
25 25 
soil_texture,texture,,
inputs/SALVIAS/plotMetadata/map.csv
29 29 
bearing,bearing,,
30 30 
slope_aspect,slopeAspect,,
31 31 
slope_gradient,slopeGradient,,
32 
clay_percent,clay_percent,"/_units:[default=""%"",to=]/value",
33 
silt_percent,silt_percent,"/_units:[default=""%"",to=]/value",
34 
sand_percent,sand_percent,"/_units:[default=""%"",to=]/value",
32 
clay_percent,clay_percent,,
33 
silt_percent,silt_percent,,
34 
sand_percent,sand_percent,,
35 35 
pH,ph,,"Brad: For all these soil variables, how do we store information on method, units. Seems like an ontological structure would be more appropriate (measurementName, measurementValue, measurementUnits, measurementMethod). Same as BIEN traits table. Something to discuss."
36 
soil_N,nitrogen_percent,"/_units:[default=""%"",to=]/value",
37 
soil_P,phosphorus_percent,"/_units:[default=""%"",to=]/value/_map:[""<1,5""=0,*=*]/value",
38 
soil_C,carbon_percent,"/_units:[default=""%"",to=]/value",
39 
soil_K,potassium_percent,"/_units:[default=""%"",to=]/value",
40 
soil_Mg,magnesium_percent,"/_units:[default=""%"",to=]/value",
41 
soil_Ca,calcium_percent,"/_units:[default=""%"",to=]/value",
42 
soil_Na,sodium_percent,"/_units:[default=""%"",to=]/value",
43 
soil_acidity,acidity_percent,"/_units:[default=""%"",to=]/value/_map:[""<0.05""=0,*=*]/value",
44 
soil_base,baseSaturation_percent,"/_units:[default=""%"",to=]/value",
36 
soil_N,nitrogen_percent,,
37 
soil_P,phosphorus_percent,"/_map:[""<1,5""=0,*=*]/value",
38 
soil_C,carbon_percent,,
39 
soil_K,potassium_percent,,
40 
soil_Mg,magnesium_percent,,
41 
soil_Ca,calcium_percent,,
42 
soil_Na,sodium_percent,,
43 
soil_acidity,acidity_percent,"/_map:[""<0.05""=0,*=*]/value",
44 
soil_base,baseSaturation_percent,,
45 45 
soil_cation_cap,cationExchangeCapacity_cmol_kg,,
46 46 
soil_conductivity,conductivity,,
47 
organic_percent,organic_percent,"/_units:[default=""%"",to=]/value",
48 
soil_texture,texture,"/_units:[default=""%"",to=]/value",
47 
organic_percent,organic_percent,,
48 
soil_texture,texture,,
49 49 
RevisionComments,RevisionComments,,
50 50 
Locality_Description,locality,,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"
51 51 
topography_desc,topography_desc,,
inputs/SALVIAS/plotMetadata/VegBIEN.csv
19 19 
date_finish,/location/locationevent/obsenddate/_*/date/_alt/1,
20 20 
date_start,/location/locationevent/obsstartdate/_*/date/_alt/1,
21 21 
Precip,/location/locationevent/precipitation_m,
22 
soil_acidity,"/location/locationevent/soilobs/acidity_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value/_map:[""<0.05""=0,*=*]/value",
23 
soil_base,"/location/locationevent/soilobs/basesaturation_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
24 
soil_Ca,"/location/locationevent/soilobs/calcium_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
25 
soil_C,"/location/locationevent/soilobs/carbon_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
22 
soil_acidity,"/location/locationevent/soilobs/acidity_fraction/_percent_to_fraction/value/_map:[""<0.05""=0,*=*]/value",
23 
soil_base,/location/locationevent/soilobs/basesaturation_fraction/_percent_to_fraction/value,
24 
soil_Ca,/location/locationevent/soilobs/calcium_fraction/_percent_to_fraction/value,
25 
soil_C,/location/locationevent/soilobs/carbon_fraction/_percent_to_fraction/value,
26 26 
soil_cation_cap,/location/locationevent/soilobs/cationexchangecapacity_cmol_kg,
27 
clay_percent,"/location/locationevent/soilobs/clay_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
27 
clay_percent,/location/locationevent/soilobs/clay_fraction/_percent_to_fraction/value,
28 28 
soil_conductivity,/location/locationevent/soilobs/conductivity,
29 
soil_Mg,"/location/locationevent/soilobs/magnesium_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
30 
soil_N,"/location/locationevent/soilobs/nitrogen_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
31 
organic_percent,"/location/locationevent/soilobs/organic_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
29 
soil_Mg,/location/locationevent/soilobs/magnesium_fraction/_percent_to_fraction/value,
30 
soil_N,/location/locationevent/soilobs/nitrogen_fraction/_percent_to_fraction/value,
31 
organic_percent,/location/locationevent/soilobs/organic_fraction/_percent_to_fraction/value,
32 32 
pH,/location/locationevent/soilobs/ph,"Brad: For all these soil variables, how do we store information on method, units. Seems like an ontological structure would be more appropriate (measurementName, measurementValue, measurementUnits, measurementMethod). Same as BIEN traits table. Something to discuss."
33 
soil_P,"/location/locationevent/soilobs/phosphorus_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value/_map:[""<1,5""=0,*=*]/value",
34 
soil_K,"/location/locationevent/soilobs/potassium_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
35 
sand_percent,"/location/locationevent/soilobs/sand_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
36 
silt_percent,"/location/locationevent/soilobs/silt_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
37 
soil_Na,"/location/locationevent/soilobs/sodium_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
38 
soil_texture,"/location/locationevent/soilobs/texture/_units:[default=""%"",to=]/value",
33 
soil_P,"/location/locationevent/soilobs/phosphorus_fraction/_percent_to_fraction/value/_map:[""<1,5""=0,*=*]/value",
34 
soil_K,/location/locationevent/soilobs/potassium_fraction/_percent_to_fraction/value,
35 
sand_percent,/location/locationevent/soilobs/sand_fraction/_percent_to_fraction/value,
36 
silt_percent,/location/locationevent/soilobs/silt_fraction/_percent_to_fraction/value,
37 
soil_Na,/location/locationevent/soilobs/sodium_fraction/_percent_to_fraction/value,
38 
soil_texture,/location/locationevent/soilobs/texture,
39 39 
PlotID,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/1/_first/2/_if[@name=""if is organism""]/cond/_exists","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
40 40 
SiteCode,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/1/_first/2/_if[@name=""if is organism""]/cond/_exists",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
41 41 
Temp,/location/locationevent/temperature_c,
inputs/SALVIAS/plotMetadata/test.xml.ref
54 54 
                        <acidity_fraction>
55 55 
                            <_percent_to_fraction>
56 56 
                                <value>
57 
                                    <_units>
58 
                                        <default>%</default>
59 
                                        <to></to>
60 
                                        <value>
61 
                                            <_map>
62 
                                                <<0.05>0</<0.05>
63 
                                                <*>*</*>
64 
                                                <value>$soil_acidity</value>
65 
                                            </_map>
66 
                                        </value>
67 
                                    </_units>
57 
                                    <_map>
58 
                                        <<0.05>0</<0.05>
59 
                                        <*>*</*>
60 
                                        <value>$soil_acidity</value>
61 
                                    </_map>
68 62 
                                </value>
69 63 
                            </_percent_to_fraction>
70 64 
                        </acidity_fraction>
71 
                        <basesaturation_fraction>
72 
                            <_percent_to_fraction>
73 
                                <value>
74 
                                    <_units>
75 
                                        <default>%</default>
76 
                                        <to></to>
77 
                                        <value>$soil_base</value>
78 
                                    </_units>
79 
                                </value>
80 
                            </_percent_to_fraction>
81 
                        </basesaturation_fraction>
82 
                        <calcium_fraction>
83 
                            <_percent_to_fraction>
84 
                                <value>
85 
                                    <_units>
86 
                                        <default>%</default>
87 
                                        <to></to>
88 
                                        <value>$soil_Ca</value>
89 
                                    </_units>
90 
                                </value>
91 
                            </_percent_to_fraction>
92 
                        </calcium_fraction>
93 
                        <carbon_fraction>
94 
                            <_percent_to_fraction>
95 
                                <value>
96 
                                    <_units>
97 
                                        <default>%</default>
98 
                                        <to></to>
99 
                                        <value>$soil_C</value>
100 
                                    </_units>
101 
                                </value>
102 
                            </_percent_to_fraction>
103 
                        </carbon_fraction>
65 
                        <basesaturation_fraction><_percent_to_fraction><value>$soil_base</value></_percent_to_fraction></basesaturation_fraction>
66 
                        <calcium_fraction><_percent_to_fraction><value>$soil_Ca</value></_percent_to_fraction></calcium_fraction>
67 
                        <carbon_fraction><_percent_to_fraction><value>$soil_C</value></_percent_to_fraction></carbon_fraction>
104 68 
                        <cationexchangecapacity_cmol_kg>$soil_cation_cap</cationexchangecapacity_cmol_kg>
105 
                        <clay_fraction>
106 
                            <_percent_to_fraction>
107 
                                <value>
108 
                                    <_units>
109 
                                        <default>%</default>
110 
                                        <to></to>
111 
                                        <value>$clay_percent</value>
112 
                                    </_units>
113 
                                </value>
114 
                            </_percent_to_fraction>
115 
                        </clay_fraction>
69 
                        <clay_fraction><_percent_to_fraction><value>$clay_percent</value></_percent_to_fraction></clay_fraction>
116 70 
                        <conductivity>$soil_conductivity</conductivity>
117 
                        <magnesium_fraction>
118 
                            <_percent_to_fraction>
119 
                                <value>
120 
                                    <_units>
121 
                                        <default>%</default>
122 
                                        <to></to>
123 
                                        <value>$soil_Mg</value>
124 
                                    </_units>
125 
                                </value>
126 
                            </_percent_to_fraction>
127 
                        </magnesium_fraction>
128 
                        <nitrogen_fraction>
129 
                            <_percent_to_fraction>
130 
                                <value>
131 
                                    <_units>
132 
                                        <default>%</default>
133 
                                        <to></to>
134 
                                        <value>$soil_N</value>
135 
                                    </_units>
136 
                                </value>
137 
                            </_percent_to_fraction>
138 
                        </nitrogen_fraction>
139 
                        <organic_fraction>
140 
                            <_percent_to_fraction>
141 
                                <value>
142 
                                    <_units>
143 
                                        <default>%</default>
144 
                                        <to></to>
145 
                                        <value>$organic_percent</value>
146 
                                    </_units>
147 
                                </value>
148 
                            </_percent_to_fraction>
149 
                        </organic_fraction>
71 
                        <magnesium_fraction><_percent_to_fraction><value>$soil_Mg</value></_percent_to_fraction></magnesium_fraction>
72 
                        <nitrogen_fraction><_percent_to_fraction><value>$soil_N</value></_percent_to_fraction></nitrogen_fraction>
73 
                        <organic_fraction><_percent_to_fraction><value>$organic_percent</value></_percent_to_fraction></organic_fraction>
150 74 
                        <ph>$pH</ph>
151 75 
                        <phosphorus_fraction>
152 76 
                            <_percent_to_fraction>
153 77 
                                <value>
154 
                                    <_units>
155 
                                        <default>%</default>
156 
                                        <to></to>
157 
                                        <value>
158 
                                            <_map>
159 
                                                <<1,5>0</<1,5>
160 
                                                <*>*</*>
161 
                                                <value>$soil_P</value>
162 
                                            </_map>
163 
                                        </value>
164 
                                    </_units>
78 
                                    <_map>
79 
                                        <<1,5>0</<1,5>
80 
                                        <*>*</*>
81 
                                        <value>$soil_P</value>
82 
                                    </_map>
165 83 
                                </value>
166 84 
                            </_percent_to_fraction>
167 85 
                        </phosphorus_fraction>
168 
                        <potassium_fraction>
169 
                            <_percent_to_fraction>
170 
                                <value>
171 
                                    <_units>
172 
                                        <default>%</default>
173 
                                        <to></to>
174 
                                        <value>$soil_K</value>
175 
                                    </_units>
176 
                                </value>
177 
                            </_percent_to_fraction>
178 
                        </potassium_fraction>
179 
                        <sand_fraction>
180 
                            <_percent_to_fraction>
181 
                                <value>
182 
                                    <_units>
183 
                                        <default>%</default>
184 
                                        <to></to>
185 
                                        <value>$sand_percent</value>
186 
                                    </_units>
187 
                                </value>
188 
                            </_percent_to_fraction>
189 
                        </sand_fraction>
190 
                        <silt_fraction>
191 
                            <_percent_to_fraction>
192 
                                <value>
193 
                                    <_units>
194 
                                        <default>%</default>
195 
                                        <to></to>
196 
                                        <value>$silt_percent</value>
197 
                                    </_units>
198 
                                </value>
199 
                            </_percent_to_fraction>
200 
                        </silt_fraction>
201 
                        <sodium_fraction>
202 
                            <_percent_to_fraction>
203 
                                <value>
204 
                                    <_units>
205 
                                        <default>%</default>
206 
                                        <to></to>
207 
                                        <value>$soil_Na</value>
208 
                                    </_units>
209 
                                </value>
210 
                            </_percent_to_fraction>
211 
                        </sodium_fraction>
212 
                        <texture>
213 
                            <_units>
214 
                                <default>%</default>
215 
                                <to></to>
216 
                                <value>$soil_texture</value>
217 
                            </_units>
218 
                        </texture>
86 
                        <potassium_fraction><_percent_to_fraction><value>$soil_K</value></_percent_to_fraction></potassium_fraction>
87 
                        <sand_fraction><_percent_to_fraction><value>$sand_percent</value></_percent_to_fraction></sand_fraction>
88 
                        <silt_fraction><_percent_to_fraction><value>$silt_percent</value></_percent_to_fraction></silt_fraction>
89 
                        <sodium_fraction><_percent_to_fraction><value>$soil_Na</value></_percent_to_fraction></sodium_fraction>
90 
                        <texture>$soil_texture</texture>
219 91 
                    </soilobs>
220 92 
                    <temperature_c>$Temp</temperature_c>
221 93 
                </locationevent>
inputs/SALVIAS/plotMetadata/new_terms.csv
9 9 
elev_min_m,minimumElevationInMeters,,
10 10 
Precip,precipitation,,
11 11 
Temp,temperature,,
12 
soil_N,nitrogen_percent,"/_units:[default=""%"",to=]/value",
13 
soil_P,phosphorus_percent,"/_units:[default=""%"",to=]/value/_map:[""<1,5""=0,*=*]/value",
14 
soil_C,carbon_percent,"/_units:[default=""%"",to=]/value",
15 
soil_K,potassium_percent,"/_units:[default=""%"",to=]/value",
16 
soil_Mg,magnesium_percent,"/_units:[default=""%"",to=]/value",
17 
soil_Ca,calcium_percent,"/_units:[default=""%"",to=]/value",
18 
soil_Na,sodium_percent,"/_units:[default=""%"",to=]/value",
19 
soil_acidity,acidity_percent,"/_units:[default=""%"",to=]/value/_map:[""<0.05""=0,*=*]/value",
20 
soil_base,baseSaturation_percent,"/_units:[default=""%"",to=]/value",
12 
soil_N,nitrogen_percent,,
13 
soil_P,phosphorus_percent,"/_map:[""<1,5""=0,*=*]/value",
14 
soil_C,carbon_percent,,
15 
soil_K,potassium_percent,,
16 
soil_Mg,magnesium_percent,,
17 
soil_Ca,calcium_percent,,
18 
soil_Na,sodium_percent,,
19 
soil_acidity,acidity_percent,"/_map:[""<0.05""=0,*=*]/value",
20 
soil_base,baseSaturation_percent,,
21 21 
soil_cation_cap,cationExchangeCapacity_cmol_kg,,
22 22 
soil_conductivity,conductivity,,
23 
soil_texture,texture,"/_units:[default=""%"",to=]/value",
23 
soil_texture,texture,,
24 24 
Locality_Description,locality,,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"
25 25 
life_zone_code,communityID,,
26 26 
life_zone,communityName,,

Also available in: Unified diff