Revision 494
Added by Aaron Marcuse-Kubitza about 13 years ago
inputs/SALVIAS/map.VegBIEN.organisms.csv | ||
---|---|---|
11 | 11 |
ht_first_branch_m,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=heightFirstBranchM]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob |
12 | 12 |
x_position,/aggregateoccurrence/individualplant/stem/xposition,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX." |
13 | 13 |
y_position,/aggregateoccurrence/individualplant/stem/yposition,Brad: See comment above for x_position |
14 |
census_date,/taxondetermination[role_id/aux_role/rolecode=collector]/collectiondate/_date/date,
|
|
14 |
census_date,/specimen/collectiondate/_date/date,
|
|
15 | 15 |
coll_number,/taxondetermination[role_id/aux_role/rolecode=collector]/collectionnumber,Brad: Incorrect. Map instead as for voucher_string |
16 | 16 |
coll_firstname,"/taxondetermination[role_id/aux_role/rolecode=collector]/collector_id/party/{givenname/_namePart/first,middlename/_namePart/last}",Brad: See comment above |
17 | 17 |
coll_lastname,/taxondetermination[role_id/aux_role/rolecode=collector]/collector_id/party/{surname},"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick." |
mappings/SALVIAS_db-VegBIEN.organisms.csv | ||
---|---|---|
11 | 11 |
ht_first_branch_m,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=heightFirstBranchM]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob |
12 | 12 |
x_position,/aggregateoccurrence/individualplant/stem/xposition,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX." |
13 | 13 |
y_position,/aggregateoccurrence/individualplant/stem/yposition,Brad: See comment above for x_position |
14 |
census_date,/taxondetermination[role_id/aux_role/rolecode=collector]/collectiondate/_date/date,
|
|
14 |
census_date,/specimen/collectiondate/_date/date,
|
|
15 | 15 |
coll_number,/taxondetermination[role_id/aux_role/rolecode=collector]/collectionnumber,Brad: Incorrect. Map instead as for voucher_string |
16 | 16 |
coll_firstname,"/taxondetermination[role_id/aux_role/rolecode=collector]/collector_id/party/{givenname/_namePart/first,middlename/_namePart/last}",Brad: See comment above |
17 | 17 |
coll_lastname,/taxondetermination[role_id/aux_role/rolecode=collector]/collector_id/party/{surname},"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick." |
mappings/VegX-VegBIEN.organisms.csv | ||
---|---|---|
71 | 71 |
/simpleUserdefined[name=vegetation]/value,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=vegetation]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue" |
72 | 72 |
/simpleUserdefined[name=xPosition]/value,/aggregateoccurrence/individualplant/stem/xposition |
73 | 73 |
/simpleUserdefined[name=yPosition]/value,/aggregateoccurrence/individualplant/stem/yposition |
74 |
/simpleUserdefined[name=collectionDate]/value,/taxondetermination[role_id/aux_role/rolecode=collector]/collectiondate
|
|
75 |
/simpleUserdefined[name=collectionDate]/value/_date/date,/taxondetermination[role_id/aux_role/rolecode=collector]/collectiondate/_date/date
|
|
74 |
/simpleUserdefined[name=collectionDate]/value,/specimen/collectiondate
|
|
75 |
/simpleUserdefined[name=collectionDate]/value/_date/date,/specimen/collectiondate/_date/date
|
|
76 | 76 |
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/authorCode,/taxondetermination[role_id/aux_role/rolecode=collector]/collectionnumber |
77 | 77 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/givenName","/taxondetermination[role_id/aux_role/rolecode=collector]/collector_id/party/{givenname/_namePart/first,middlename/_namePart/last}" |
78 | 78 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/{givenName/_namePart/{first,middle},surName/_namePart/last}","/taxondetermination[role_id/aux_role/rolecode=collector]/collector_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}" |
mappings/for_review/SALVIAS_db-VegBIEN.organisms.csv | ||
---|---|---|
11 | 11 |
ht_first_branch_m,"//stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=heightFirstBranchM]]/definedvalue",Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob |
12 | 12 |
x_position,//stem/xposition,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX." |
13 | 13 |
y_position,//stem/yposition,Brad: See comment above for x_position |
14 |
census_date,/taxondetermination[rolecode=collector]/collectiondate/_date/date,
|
|
14 |
census_date,//specimen/collectiondate/_date/date,
|
|
15 | 15 |
coll_number,/taxondetermination[rolecode=collector]/collectionnumber,Brad: Incorrect. Map instead as for voucher_string |
16 | 16 |
coll_firstname,"/taxondetermination[rolecode=collector]/collector_id/party/{givenname/_namePart/first,middlename/_namePart/last}",Brad: See comment above |
17 | 17 |
coll_lastname,/taxondetermination[rolecode=collector]/collector_id/party/{surname},"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick." |
mappings/for_review/VegX-VegBIEN.organisms.csv | ||
---|---|---|
71 | 71 |
/simpleUserdefined[name=vegetation]/value,"//stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=vegetation]]/definedvalue" |
72 | 72 |
/simpleUserdefined[name=xPosition]/value,//stem/xposition |
73 | 73 |
/simpleUserdefined[name=yPosition]/value,//stem/yposition |
74 |
/simpleUserdefined[name=collectionDate]/value,/taxondetermination[rolecode=collector]/collectiondate
|
|
75 |
/simpleUserdefined[name=collectionDate]/value/_date/date,/taxondetermination[rolecode=collector]/collectiondate/_date/date
|
|
74 |
/simpleUserdefined[name=collectionDate]/value,//specimen/collectiondate
|
|
75 |
/simpleUserdefined[name=collectionDate]/value/_date/date,//specimen/collectiondate/_date/date
|
|
76 | 76 |
//taxonNameUsageConcept/authorCode,/taxondetermination[rolecode=collector]/collectionnumber |
77 | 77 |
//individualName/givenName,"/taxondetermination[rolecode=collector]/collector_id/party/{givenname/_namePart/first,middlename/_namePart/last}" |
78 | 78 |
"//parties/party/individualName/{givenName/_namePart/{first,middle},surName/_namePart/last}","/taxondetermination[rolecode=collector]/collector_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}" |
Also available in: Unified diff
VegX-VegBIEN mapping: Map collectiondate to specimen table